Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os06t0112000-01
CDS Infomation	cds chromosome:IRGSP-1.0:6:676126:678878:1 gene:Os06g0112000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os06t0112000-01)
Sequence	ATGGTGTGCTCCGTGGCTGCCACCGCCTCGCTCCTCCCCTCTCCTCCTCCCAAACCCACC GCCCTCGCCGCCGACGACCACCACGCCCGCCTCAGGGCGGCGGCCGCGCGCTCCGACCTG CCGGCCGCGCTGGCCGCCTTCGTCGCCATGTCCTCCGCCGGGGCGCCACCCGTCCTCCGC ACCTTCACCTCCCTCCTCAAGCTCTGCGCCGCCCGCGGCGACCTCGCCACCGGCCGCGCC GTCCACGCGCAGCTCGCCGCCCGGGGGATAGACTCCGAGGCCCTCGCCGCCACCGCGCTG GCCAACATGTACGCCAAGTGCCGCCGCCCCGCCGACGCACGCAGGGTGTTCGACCGAATG CCTGTCCGGGACCGCGTCGCGTGGAACGCGCTCGTGGCCGGCTACGCGCGGAACGGCCTC GCCCGGATGGCCATGGAGATGGTCGTCAGGATGCAGGAGGAGGAAGGGGAGCGGCCTGAC TCGATCACGCTCGTGTCCGTGCTTCCGGCCTGCGCGAACGCCAGGGCGCTTGCTGCCTGC CGAGAGGCGCACGCGTTCGCGATCCGTTCTGGGCTGGAAGAGCTTGTTAATGTCGCTACG GCCATCCTTGACGCCTACTGCAAGTGTGGGGACATCCGGGCAGCAAGGGTGGTCTTCGAC TGGATGCCAACCAAGAACTCCGTGTCCTGGAATGCCATGATCGATGGATATGCACAGAAT GGGGATTCAAGGGAGGCTCTGGCTCTTTTCAATAGGATGGTCGAGGAGGGTGTCGATGTG ACGGATGTCTCTGTCCTGGCAGCACTGCAAGCGTGTGGGGAGCTTGGCTGTCTTGATGAA GGGATGCGTGTCCATGAACTGCTTGTGCGGATTGGCTTAGACTCCAACGTGTCAGTGATG AATGCACTCATCACCATGTATTCCAAATGCAAGAGAGTTGACCTGGCATCTCATGTGTTT GATGAGTTGGACAGAAGGACGCAGGTATCGTGGAATGCCATGATCCTTGGATGCGCGCAG AATGGATGCTCCGAGGATGCGGTGAGGCTTTTTACTAGGATGCAGTTGGAGAATGTGAAA CCTGATTCATTCACTCTTGTCAGTGTTATTCCAGCTCTTGCGGATATTTCAGATCCTCTG CAGGCAAGATGGATCCATGGATATTCTATCAGGTTACACCTAGATCAGGATGTATATGTT CTGACCGCCCTTATTGATATGTATGCAAAATGTGGCCGTGTTAACATAGCTAGAATTCTG TTCAATTCTGCAAGGGAGAGGCATGTTATCACATGGAACGCTATGATCCATGGTTATGGA TCACATGGTTTTGGCAAAGCTGCAGTTGAGCTATTTGAAGAGATGAAGAGCATTGGCATA GTGCCTAATGAGACAACATTCCTTTCAGTCCTCTCTGCATGCAGTCATGCTGGTTTGGTT GATGAAGGACGGGAATATTTTACCAGCATGAAGGAGGACTATGGGCTTGAACCTGGGATG GAGCACTATGGTACCATGGTGGATCTTCTTGGCCGAGCCGGGAAGCTAGATGAAGCATGG GCTTTCATTCAAAAGATGCCTATGGACCCTGGCCTTAGTGTTTACGGTGCGATGTTAGGT GCTTGCAAGTTGCACAAGAATGTGGAGTTGGCAGAAGAATCGGCTCAGAAGATTTTTGAG CTAGGGCCACAGGAGGGAGTGTATCATGTCCTCTTGGCAAACATTTATGCAAACGCTTCC ATGTGGAAGGATGTTGCAAGGGTGAGAACTGCTATGGAGAAGAATGGCCTCCAAAAAACT CCTGGATGGAGTATCATTCAACTCAAGAATGAGATCCATACCTTCTACTCTGGAAGCACA AATCACCAGCAAGCAAAGGAGATATATTCAAGGTTGGCTAAGTTGATAGAAGAGATCAAA GCAGTGGGCTATGTGCCAGACACTGATTCAATACATGATGTGGAAGATGATGTCAAAGCA CAGCTGCTCAACACCCACAGCGAGAAGCTTGCCATTGCTTTTGGGCTCATTCGCACAGCC CCTGGCACAACAATCCAGATAAAGAAGAACCTCCGAGTTTGTAATGACTGCCATAATGCA ACCAAGCTAATATCTTTAGTGACAGGACGGGAAATAATCATGAGAGATATTCAGCGATTC CACCATTTTAAGGATGGCAAATGCTCATGTGGAGACTACTGGTAG

Peptide Sequence

PEP ID	Os06t0112000-01
PEP Infomation	pep chromosome:IRGSP-1.0:6:676126:678878:1 gene:Os06g0112000 transcript:Os06t0112000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os06t0112000-01)
Sequence	MVCSVAATASLLPSPPPKPTALAADDHHARLRAAAARSDLPAALAAFVAMSSAGAPPVLR TFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDRM PVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAAC REAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQN GDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVM NALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVK PDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARIL FNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLV DEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLG ACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKT PGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTDSIHDVEDDVKA QLLNTHSEKLAIAFGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLVTGREIIMRDIQRF HHFKDGKCSCGDYW

Transcript Sequence

Transcript ID	Os06t0112000-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:6:676126:678878:1 gene:Os06g0112000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os06t0112000-01)
Sequence	GGGCGCGCGTAGCGAGTGCCAGTGGCGGTTGCATGTAGAGCCGCAGACCGCAGTCGAGAT GGTGTGCTCCGTGGCTGCCACCGCCTCGCTCCTCCCCTCTCCTCCTCCCAAACCCACCGC CCTCGCCGCCGACGACCACCACGCCCGCCTCAGGGCGGCGGCCGCGCGCTCCGACCTGCC GGCCGCGCTGGCCGCCTTCGTCGCCATGTCCTCCGCCGGGGCGCCACCCGTCCTCCGCAC CTTCACCTCCCTCCTCAAGCTCTGCGCCGCCCGCGGCGACCTCGCCACCGGCCGCGCCGT CCACGCGCAGCTCGCCGCCCGGGGGATAGACTCCGAGGCCCTCGCCGCCACCGCGCTGGC CAACATGTACGCCAAGTGCCGCCGCCCCGCCGACGCACGCAGGGTGTTCGACCGAATGCC TGTCCGGGACCGCGTCGCGTGGAACGCGCTCGTGGCCGGCTACGCGCGGAACGGCCTCGC CCGGATGGCCATGGAGATGGTCGTCAGGATGCAGGAGGAGGAAGGGGAGCGGCCTGACTC GATCACGCTCGTGTCCGTGCTTCCGGCCTGCGCGAACGCCAGGGCGCTTGCTGCCTGCCG AGAGGCGCACGCGTTCGCGATCCGTTCTGGGCTGGAAGAGCTTGTTAATGTCGCTACGGC CATCCTTGACGCCTACTGCAAGTGTGGGGACATCCGGGCAGCAAGGGTGGTCTTCGACTG GATGCCAACCAAGAACTCCGTGTCCTGGAATGCCATGATCGATGGATATGCACAGAATGG GGATTCAAGGGAGGCTCTGGCTCTTTTCAATAGGATGGTCGAGGAGGGTGTCGATGTGAC GGATGTCTCTGTCCTGGCAGCACTGCAAGCGTGTGGGGAGCTTGGCTGTCTTGATGAAGG GATGCGTGTCCATGAACTGCTTGTGCGGATTGGCTTAGACTCCAACGTGTCAGTGATGAA TGCACTCATCACCATGTATTCCAAATGCAAGAGAGTTGACCTGGCATCTCATGTGTTTGA TGAGTTGGACAGAAGGACGCAGGTATCGTGGAATGCCATGATCCTTGGATGCGCGCAGAA TGGATGCTCCGAGGATGCGGTGAGGCTTTTTACTAGGATGCAGTTGGAGAATGTGAAACC TGATTCATTCACTCTTGTCAGTGTTATTCCAGCTCTTGCGGATATTTCAGATCCTCTGCA GGCAAGATGGATCCATGGATATTCTATCAGGTTACACCTAGATCAGGATGTATATGTTCT GACCGCCCTTATTGATATGTATGCAAAATGTGGCCGTGTTAACATAGCTAGAATTCTGTT CAATTCTGCAAGGGAGAGGCATGTTATCACATGGAACGCTATGATCCATGGTTATGGATC ACATGGTTTTGGCAAAGCTGCAGTTGAGCTATTTGAAGAGATGAAGAGCATTGGCATAGT GCCTAATGAGACAACATTCCTTTCAGTCCTCTCTGCATGCAGTCATGCTGGTTTGGTTGA TGAAGGACGGGAATATTTTACCAGCATGAAGGAGGACTATGGGCTTGAACCTGGGATGGA GCACTATGGTACCATGGTGGATCTTCTTGGCCGAGCCGGGAAGCTAGATGAAGCATGGGC TTTCATTCAAAAGATGCCTATGGACCCTGGCCTTAGTGTTTACGGTGCGATGTTAGGTGC TTGCAAGTTGCACAAGAATGTGGAGTTGGCAGAAGAATCGGCTCAGAAGATTTTTGAGCT AGGGCCACAGGAGGGAGTGTATCATGTCCTCTTGGCAAACATTTATGCAAACGCTTCCAT GTGGAAGGATGTTGCAAGGGTGAGAACTGCTATGGAGAAGAATGGCCTCCAAAAAACTCC TGGATGGAGTATCATTCAACTCAAGAATGAGATCCATACCTTCTACTCTGGAAGCACAAA TCACCAGCAAGCAAAGGAGATATATTCAAGGTTGGCTAAGTTGATAGAAGAGATCAAAGC AGTGGGCTATGTGCCAGACACTGATTCAATACATGATGTGGAAGATGATGTCAAAGCACA GCTGCTCAACACCCACAGCGAGAAGCTTGCCATTGCTTTTGGGCTCATTCGCACAGCCCC TGGCACAACAATCCAGATAAAGAAGAACCTCCGAGTTTGTAATGACTGCCATAATGCAAC CAAGCTAATATCTTTAGTGACAGGACGGGAAATAATCATGAGAGATATTCAGCGATTCCA CCATTTTAAGGATGGCAAATGCTCATGTGGAGACTACTGGTAGTGAAGTGTTGAGACAGT TTGAATCTGCACCCGGAGATGAGGGAGCTTCAGAAAGATCAGAGTATCAGATCTGACAAT TAGGTGAAACTAATTGGCAAAGTTCTTAAGGGCTGTGCAGCTGCCTCTTATATCAACACT AAATGGCTAAACTTGTGAAGTATCTGAAAATTGTTATAGCCACTTCACCTTTTCAGGAAA CATACTGCAAATTCCAGTCAGTCATTGTAAAATTGAAATGCTTCTATTTACATTAAGATA CTAGTGCATAGGGAACCTGTTCTTCATAGCAACCATGACTTTCTCATGTCTTATCTTTGG CCTGAGATTAGATTCACATGTTCGGTCGAACTGTCAATAACTGAAAGTTATCATTTTCTT CT