Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os06t0111800-02
CDS Infomation	cds chromosome:IRGSP-1.0:6:660148:665281:-1 gene:Os06g0111800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CELLULOSE SYNTHASE LIKE D2, CELLULOSE SYNTHASE LIKE D2 description:Similar to CSLD2 (Fragment). (Os06t0111800-01);Similar to CSLD2 (Fragment). (Os06t0111800-02);Similar to cDNA clone:001-123-B04, full insert sequence. (Os06t0111800-03)
Sequence	ATGGCTTCCAGCGGCGGCGGCGGCCTGCGTCACAGCAACAGCAGCCGCCTCTCGCGCATG TCCTACTCCGGCGAGGACGGCCGCGCTCAGGCCCCCGGCGGCGGCGGCGACCGGCCGATG GTGACGTTCGCCCGCCGCACCCACTCGGGGCGCTACGTGAGCTACTCCCGCGACGACCTC GACAGCGAGCTCGGCAACAGCGGCGACATGTCGCCGGAGTCTGGGCAGGAGTTCCTCAAC TACCACGTGACGATCCCGGCGACGCCGGACAACCAGCCGATGGACCCGGCCATCTCGGCG CGCGTGGAGGAGCAGTACGTCTCCAACTCGCTCTTCACCGGCGGCTTCAACAGCGTCACG CGGGCGCACCTCATGGACAAGGTGATCGAGTCGGAGGCCAGCCACCCGCAGATGGCCGGC GCCAAGGGCTCCTCCTGCGCCATCAACGGCTGCGACGCCAAGGTCATGAGCGACGAGCGC GGCGACGACATCCTCCCCTGCGAGTGCGACTTCAAGATCTGCGCCGACTGCTTCGCCGAC GCCGTCAAGAACGGCGGCGCCTGCCCCGGCTGCAAGGACCCCTACAAGGCCACCGAGCTC GACGACGTGGTCGGTGCGAGGCCGACGCTGTCGCTGCCTCCGCCGCCCGGTGGCTTGCCG GCGTCGAGGATGGAGAGGCGGCTGTCGATAATGCGGTCGCAGAAGGCCATGACCAGGAGC CAGACCGGCGATTGGGATCACAATCGGTGGCTGTTCGAGACCAAGGGGACATACGGGTAT GGCAATGCCATTTGGCCCAAGGAGAACGAGGTCGACAATGGCGGTGGCGGTGGCGGAGGC GGCGGGCTGGGTGGAGGCGACGGCCAGCCGGCAGAGTTCACGAGCAAGCCATGGAGGCCG CTCACTCGCAAGCTCAAGATTCCTGCGGGTGTCCTTAGCCCATACAGGCTTCTTATTCTT ATTCGTATGGCTGTTCTTGGTCTATTCCTTGCATGGAGAATTAAGCACAAGAATGAGGAT GCAATGTGGCTATGGGGCATGTCTGTTGTTTGCGAACTCTGGTTTGGCCTCTCTTGGCTC TTGGATCAGCTGCCAAAGTTGTGCCCTGTTAACCGAGCAACTGACCTTGCTGTCCTGAAA GATAAGTTTGAGACCCCGACGCCATCAAATCCTAACGGAAGATCTGACCTGCCGGGGCTC GATATATTTGTGTCTACTGCTGATCCAGAAAAAGAACCCCCATTGGTCACAGCAAATACT ATTCTGTCCATCCTTGCTGCTGATTATCCTGTTGAGAAGCTTTCTTGCTATGTTTCTGAT GATGGAGGCGCTCTCCTGACATTTGAAGCAATGGCTGAAGCCGCTAGCTTTGCAAACATG TGGGTTCCTTTCTGTCGCAAACATGACATTGAGCCTCGCAACCCAGAGAGCTACTTTAAT CTGAAGAGGGACCCATACAAGAACAAGGTCCGTTCTGATTTTGTCAAGGACAGAAGAAGG GTGAAGAGGGAGTACGACGAGTTCAAGGTCAGGATCAATAGCTTGCCTGATTCAATCCGT CGCCGCTCCGATGCATATCATGCCAGGGAGGAAATCAAGGCCATGAAGCGGCAACGAGAG GCTGCTCTCGATGACGTGGTGGAGGCTGTTAAAATCCCTAAAGCTACCTGGATGGCTGAT GGCACGCATTGGCCTGGTACCTGGATTCAGCCCTCTGCTGAGCATGCTCGGGGTGACCAT GCTGGAATAATTCAGGTAATGCTGAAACCTCCTAGTGATGATCCCTTGTATGGAACCAGC GGTGAAGAAGGCAGACCTCTTGATTTCACTGAGGTTGACATCCGTTTGCCAATGTTGGTC TATGTGTCCCGAGAGAAGCGTCCTGGTTATGATCACAACAAGAAGGCTGGTGCGATGAAT GCGTTGGTCCGCTCATCTGCTGTCATGTCAAATGGACCTTTCATCCTCAACCTTGATTGT GATCACTATGTTTACAACTCACAAGCTTTCCGTGAAGGCATGTGCTTCATGATGGATCGT GGTGGTGACCGTATTGGCTATGTCCAGTTCCCTCAACGGTTTGAGGGCATTGATCCATCA GATCGATATGCTAACCACAACACTGTCTTCTTCGATGTCAACATGCGTGCACTTGATGGT ATCATGGGACCAGTCTACGTCGGCACTGGATGTCTTTTCCGTCGCATCGCTTTGTATGGA TTTGACCCACCGCGCTCCAAGGAACATAGTGGTTGCTGCAGCTGTTGCTTCCCCCAGAGG CGCAAGGTTAAAACTTCCACAGTTGCATCTGAAGAGAGGCAGGCTTTGAGAATGGCAGAT TTTGATGATGAGGAAATGAACATGTCACAATTTCCCAAGAAGTTCGGTAATTCAAACTTC CTCATCAACTCTATCCCAATTGCTGAATTCCAAGGGCGACCTCTTGCTGACCATCCTGGA GTCAAAAATGGACGTCCTCCTGGTGCTCTCACCGTCCCTCGCGACCTTCTCGATGCTTCC ACAGTTGCTGAGGCTATCAGTGTCATCTCATGCTGGTATGAAGATAAGACTGAGTGGGGT CAGCGTGTTGGATGGATCTATGGTTCAGTCACAGAGGATGTGGTCACTGGTTACAGGATG CACAACCGTGGATGGAAATCAGTTTACTGTGTCACCAAACGTGATGCTTTCCGTGGCACT GCACCAATCAACCTTACTGACCGTCTTCATCAGGTGCTCCGGTGGGCTACTGGTTCAGTG GAAATCTTCTTCTCCCGCAACAATGCACTACTTGCAAGCCGAAAGATGAAGTTTCTTCAG AGGATTGCATACCTGAACGTTGGCATTTACCCCTTCACATCAATCTTCCTCATTGTCTAC TGCTTCCTGCCAGCCCTGTCCCTCTTCTCGGGACAGTTCATTGTGCGGACGCTAAATGTG ACCTTCCTGACCTATCTGCTCGTTATCACTCTGACAATGTGCATGCTTGCGGTGCTCGAG ATCAAGTGGTCAGGCATCAGCTTGGAGGAATGGTGGAGGAATGAGCAGTTCTGGCTAATC GGAGGAACTAGCGCCCACCTTGCTGCTGTTCTTCAGGGTCTTCTCAAGGTGATTGCTGGT ATCGAGATCTCCTTCACGCTGACATCCAAATCTGGAGGAGATGAAGCAGACGACGAGTTT GCTGATCTCTACATCGTCAAGTGGACATCACTCATGATCCCACCGATCGTCATCATGATG GTTAACCTGATCGCCATCGCTGTCGGGTTCAGCAGGACAATATACAGTGAAATCCCTCAG TGGAGCAAGCTCCTCGGCGGCGTGTTCTTCAGCTTCTGGGTGCTGGCTCACCTTTACCCC TTCGCCAAGGGGCTAATGGGAAGGAGAGGACGAACACCGACCATCGTCTTCGTCTGGTCT GGCCTCCTTGCCATCACCATCTCATTGCTGTGGGTTGCCATCAATCCGCCGTCACAGAAC TCGCAGATAGGCGGCTCCTTCACATTCCCCTGA

Peptide Sequence

PEP ID	Os06t0111800-02
PEP Infomation	pep chromosome:IRGSP-1.0:6:660148:665281:-1 gene:Os06g0111800 transcript:Os06t0111800-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CELLULOSE SYNTHASE LIKE D2, CELLULOSE SYNTHASE LIKE D2 description:Similar to CSLD2 (Fragment). (Os06t0111800-01);Similar to CSLD2 (Fragment). (Os06t0111800-02);Similar to cDNA clone:001-123-B04, full insert sequence. (Os06t0111800-03)
Sequence	MASSGGGGLRHSNSSRLSRMSYSGEDGRAQAPGGGGDRPMVTFARRTHSGRYVSYSRDDL DSELGNSGDMSPESGQEFLNYHVTIPATPDNQPMDPAISARVEEQYVSNSLFTGGFNSVT RAHLMDKVIESEASHPQMAGAKGSSCAINGCDAKVMSDERGDDILPCECDFKICADCFAD AVKNGGACPGCKDPYKATELDDVVGARPTLSLPPPPGGLPASRMERRLSIMRSQKAMTRS QTGDWDHNRWLFETKGTYGYGNAIWPKENEVDNGGGGGGGGGLGGGDGQPAEFTSKPWRP LTRKLKIPAGVLSPYRLLILIRMAVLGLFLAWRIKHKNEDAMWLWGMSVVCELWFGLSWL LDQLPKLCPVNRATDLAVLKDKFETPTPSNPNGRSDLPGLDIFVSTADPEKEPPLVTANT ILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANMWVPFCRKHDIEPRNPESYFN LKRDPYKNKVRSDFVKDRRRVKREYDEFKVRINSLPDSIRRRSDAYHAREEIKAMKRQRE AALDDVVEAVKIPKATWMADGTHWPGTWIQPSAEHARGDHAGIIQVMLKPPSDDPLYGTS GEEGRPLDFTEVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRSSAVMSNGPFILNLDC DHYVYNSQAFREGMCFMMDRGGDRIGYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDG IMGPVYVGTGCLFRRIALYGFDPPRSKEHSGCCSCCFPQRRKVKTSTVASEERQALRMAD FDDEEMNMSQFPKKFGNSNFLINSIPIAEFQGRPLADHPGVKNGRPPGALTVPRDLLDAS TVAEAISVISCWYEDKTEWGQRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGT APINLTDRLHQVLRWATGSVEIFFSRNNALLASRKMKFLQRIAYLNVGIYPFTSIFLIVY CFLPALSLFSGQFIVRTLNVTFLTYLLVITLTMCMLAVLEIKWSGISLEEWWRNEQFWLI GGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDEADDEFADLYIVKWTSLMIPPIVIMM VNLIAIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWS GLLAITISLLWVAINPPSQNSQIGGSFTFP

Transcript Sequence

Transcript ID	Os06t0111800-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:6:660148:665281:-1 gene:Os06g0111800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CELLULOSE SYNTHASE LIKE D2, CELLULOSE SYNTHASE LIKE D2 description:Similar to CSLD2 (Fragment). (Os06t0111800-01);Similar to CSLD2 (Fragment). (Os06t0111800-02);Similar to cDNA clone:001-123-B04, full insert sequence. (Os06t0111800-03)
Sequence	ATCAATTGCTAACACGAGTAGTCTATCATCATTAACTCGCATCCCTTCCCCTTCCATTGC TCATTGTCTTTCCATTCATACGGTGTTGTGTTGTTGTGGCCCAAGAAGAAGAACAAGTAC ACCACACGCCATTACTCCCATCTCTCTTACTCCTCCTCGAGTTTGATTGATTCGAGTGGT CGCATCGCATGATCAGAAAGTGAGGCGATCGATCCATGGCTTCCAGCGGCGGCGGCGGCC TGCGTCACAGCAACAGCAGCCGCCTCTCGCGCATGTCCTACTCCGGCGAGGACGGCCGCG CTCAGGCCCCCGGCGGCGGCGGCGACCGGCCGATGGTGACGTTCGCCCGCCGCACCCACT CGGGGCGCTACGTGAGCTACTCCCGCGACGACCTCGACAGCGAGCTCGGCAACAGCGGCG ACATGTCGCCGGAGTCTGGGCAGGAGTTCCTCAACTACCACGTGACGATCCCGGCGACGC CGGACAACCAGCCGATGGACCCGGCCATCTCGGCGCGCGTGGAGGAGCAGTACGTCTCCA ACTCGCTCTTCACCGGCGGCTTCAACAGCGTCACGCGGGCGCACCTCATGGACAAGGTGA TCGAGTCGGAGGCCAGCCACCCGCAGATGGCCGGCGCCAAGGGCTCCTCCTGCGCCATCA ACGGCTGCGACGCCAAGGTCATGAGCGACGAGCGCGGCGACGACATCCTCCCCTGCGAGT GCGACTTCAAGATCTGCGCCGACTGCTTCGCCGACGCCGTCAAGAACGGCGGCGCCTGCC CCGGCTGCAAGGACCCCTACAAGGCCACCGAGCTCGACGACGTGGTCGGTGCGAGGCCGA CGCTGTCGCTGCCTCCGCCGCCCGGTGGCTTGCCGGCGTCGAGGATGGAGAGGCGGCTGT CGATAATGCGGTCGCAGAAGGCCATGACCAGGAGCCAGACCGGCGATTGGGATCACAATC GGTGGCTGTTCGAGACCAAGGGGACATACGGGTATGGCAATGCCATTTGGCCCAAGGAGA ACGAGGTCGACAATGGCGGTGGCGGTGGCGGAGGCGGCGGGCTGGGTGGAGGCGACGGCC AGCCGGCAGAGTTCACGAGCAAGCCATGGAGGCCGCTCACTCGCAAGCTCAAGATTCCTG CGGGTGTCCTTAGCCCATACAGGCTTCTTATTCTTATTCGTATGGCTGTTCTTGGTCTAT TCCTTGCATGGAGAATTAAGCACAAGAATGAGGATGCAATGTGGCTATGGGGCATGTCTG TTGTTTGCGAACTCTGGTTTGGCCTCTCTTGGCTCTTGGATCAGCTGCCAAAGTTGTGCC CTGTTAACCGAGCAACTGACCTTGCTGTCCTGAAAGATAAGTTTGAGACCCCGACGCCAT CAAATCCTAACGGAAGATCTGACCTGCCGGGGCTCGATATATTTGTGTCTACTGCTGATC CAGAAAAAGAACCCCCATTGGTCACAGCAAATACTATTCTGTCCATCCTTGCTGCTGATT ATCCTGTTGAGAAGCTTTCTTGCTATGTTTCTGATGATGGAGGCGCTCTCCTGACATTTG AAGCAATGGCTGAAGCCGCTAGCTTTGCAAACATGTGGGTTCCTTTCTGTCGCAAACATG ACATTGAGCCTCGCAACCCAGAGAGCTACTTTAATCTGAAGAGGGACCCATACAAGAACA AGGTCCGTTCTGATTTTGTCAAGGACAGAAGAAGGGTGAAGAGGGAGTACGACGAGTTCA AGGTCAGGATCAATAGCTTGCCTGATTCAATCCGTCGCCGCTCCGATGCATATCATGCCA GGGAGGAAATCAAGGCCATGAAGCGGCAACGAGAGGCTGCTCTCGATGACGTGGTGGAGG CTGTTAAAATCCCTAAAGCTACCTGGATGGCTGATGGCACGCATTGGCCTGGTACCTGGA TTCAGCCCTCTGCTGAGCATGCTCGGGGTGACCATGCTGGAATAATTCAGGTAATGCTGA AACCTCCTAGTGATGATCCCTTGTATGGAACCAGCGGTGAAGAAGGCAGACCTCTTGATT TCACTGAGGTTGACATCCGTTTGCCAATGTTGGTCTATGTGTCCCGAGAGAAGCGTCCTG GTTATGATCACAACAAGAAGGCTGGTGCGATGAATGCGTTGGTCCGCTCATCTGCTGTCA TGTCAAATGGACCTTTCATCCTCAACCTTGATTGTGATCACTATGTTTACAACTCACAAG CTTTCCGTGAAGGCATGTGCTTCATGATGGATCGTGGTGGTGACCGTATTGGCTATGTCC AGTTCCCTCAACGGTTTGAGGGCATTGATCCATCAGATCGATATGCTAACCACAACACTG TCTTCTTCGATGTCAACATGCGTGCACTTGATGGTATCATGGGACCAGTCTACGTCGGCA CTGGATGTCTTTTCCGTCGCATCGCTTTGTATGGATTTGACCCACCGCGCTCCAAGGAAC ATAGTGGTTGCTGCAGCTGTTGCTTCCCCCAGAGGCGCAAGGTTAAAACTTCCACAGTTG CATCTGAAGAGAGGCAGGCTTTGAGAATGGCAGATTTTGATGATGAGGAAATGAACATGT CACAATTTCCCAAGAAGTTCGGTAATTCAAACTTCCTCATCAACTCTATCCCAATTGCTG AATTCCAAGGGCGACCTCTTGCTGACCATCCTGGAGTCAAAAATGGACGTCCTCCTGGTG CTCTCACCGTCCCTCGCGACCTTCTCGATGCTTCCACAGTTGCTGAGGCTATCAGTGTCA TCTCATGCTGGTATGAAGATAAGACTGAGTGGGGTCAGCGTGTTGGATGGATCTATGGTT CAGTCACAGAGGATGTGGTCACTGGTTACAGGATGCACAACCGTGGATGGAAATCAGTTT ACTGTGTCACCAAACGTGATGCTTTCCGTGGCACTGCACCAATCAACCTTACTGACCGTC TTCATCAGGTGCTCCGGTGGGCTACTGGTTCAGTGGAAATCTTCTTCTCCCGCAACAATG CACTACTTGCAAGCCGAAAGATGAAGTTTCTTCAGAGGATTGCATACCTGAACGTTGGCA TTTACCCCTTCACATCAATCTTCCTCATTGTCTACTGCTTCCTGCCAGCCCTGTCCCTCT TCTCGGGACAGTTCATTGTGCGGACGCTAAATGTGACCTTCCTGACCTATCTGCTCGTTA TCACTCTGACAATGTGCATGCTTGCGGTGCTCGAGATCAAGTGGTCAGGCATCAGCTTGG AGGAATGGTGGAGGAATGAGCAGTTCTGGCTAATCGGAGGAACTAGCGCCCACCTTGCTG CTGTTCTTCAGGGTCTTCTCAAGGTGATTGCTGGTATCGAGATCTCCTTCACGCTGACAT CCAAATCTGGAGGAGATGAAGCAGACGACGAGTTTGCTGATCTCTACATCGTCAAGTGGA CATCACTCATGATCCCACCGATCGTCATCATGATGGTTAACCTGATCGCCATCGCTGTCG GGTTCAGCAGGACAATATACAGTGAAATCCCTCAGTGGAGCAAGCTCCTCGGCGGCGTGT TCTTCAGCTTCTGGGTGCTGGCTCACCTTTACCCCTTCGCCAAGGGGCTAATGGGAAGGA GAGGACGAACACCGACCATCGTCTTCGTCTGGTCTGGCCTCCTTGCCATCACCATCTCAT TGCTGTGGGTTGCCATCAATCCGCCGTCACAGAACTCGCAGATAGGCGGCTCCTTCACAT TCCCCTGAGCTTCCTCATGAACATGAACCTTTTGTATGATGAATTATAAGAGTGGTCCCA GTAGCAGTTGTCCTTGCTGTTGGACAAGTAAATTCTTTACCTATGTTTACTTAGGTTTTT CTTTTTTTTTTGGGTCGAAGATGATACTATTATGAATCATGCATGATACTAGTTCTTTTG TTCGTTTTTGTGCCAAAATGAGAAGAGGTTCTGTTTGGACCTGAACATCAATCAATTGCA AAAATTCGGAGACTAGGAAGTTCAGAGTTGCACTCCTGCACTTCTTTGGAGCTCTTCCAT TCTGCATAACTGCGCTGTCTACTTGTATTGCATTTGCCTACTCTTAATCCTTCACTTTGC AGTAGTACT