Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0111500-02
CDS Infomation

cds chromosome:IRGSP-1.0:6:645195:646718:1 gene:Os06g0111500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:6-phosphogluconate dehydrogenase 1, cytosolic 6PGDH description:Cytosolic 6-phosphogluconate dehydrogenase. (Os06t0111500-01);Similar to 6-phosphogluconate dehydrogenase, decarboxylating. (Os06t0111500-02)
Sequence

CCTGCATCCTTTGTGAACTCCATTCAGAAGCCACGTGTTGTCATCATGCTTGTCAAGGCT
GGTGCACCAGTGGACCAGACCATTGCAACTCTTGCAGCACACTTGGAGCAGGGTGACTGT
ATTATTGATGGAGGAAATGAGTGGTACGAGAACACTGAGAGGAGGGAGAAGGCAATGGAG
GAGCGTGGCCTCCTCTATCTTGGGATGGGTGTTTCCGGAGGAGAGGAGGGTGCCCGCAAT
GGCCCGTCCTTGATGCCTGGTGGCTCATTCGAGGCGTACAAGTACATTGAAGATATTCTT
CTCAAGGTGGCTGCCCAGGTTCCTGATAGTGGCCCGTGCGTCACATACATTGGCAAAGGT
GGATCTGGAAACTTTGTCAAGATGGTTCACAACGGAATTGAGTATGGTGACATGCAACTG
ATTTCTGAGGCATATGATGTTCTCAAGTCAGTTGGTAAGCTCACAAACAGTGAGCTGCAG
CAGGTGTTTTCTGAGTGGAACAAGGGTGAGCTCCTCAGTTTCCTGATTGAGATCACAGCC
GACATATTTAGCATCAAGGATGACCAGGGTTCAGGCCACCTGGTCGACAAGGTCCTGGAC
AAGACTGGGATGAAGGGAACTGGGAAGTGGACTGTGCAGCAGGCCGCAGAGCTTTCTGTG
GCTGCTCCTACAATTGAGGCATCCTTGGATTCCAGGTTCCTCAGTGGGTTGAAGGATGAG
CGTGTTGAGGCTGCCAAGGTCTTCCAAGGTGACTTCTCCAGCAACTTGCCAGTGGACAAG
GCACAGCTGATTGAAGACGTGAGGCAGGCTCTTTACGCCTCGAAGATCTGCAGCTACGCT
CAGGGCATGAACATCATCAAGGCCAAGAGCATGGAGAAAGGGTGGAGCCTCAACCTCGGT
GAGCTAGCGAGGATCTGGAAGGGAGGGTGCATCATCCGTGCCATCTTCCTGGACCGCATC
AAGAAGGCCTACGACAGGAACTCCGACCTCGCCAACCTGCTCGTGGACCCTGAGTTCGCT
CAGGAGATCATGGACAGGCAAGCGGCATGGCGCAGGGTGGTCTGCCTTGCCATCAACAAT
GGCGTCAGCACCCCAGGCATGTCGGCGAGTCTCGCGTACTTCGACTCCTACCGGAGGGAC
AGGCTGCCTGCCAACCTGGTGCAGGCACAGAGGGACTATTTCGGGGCTCACACCTACGAG
AGGGTCGACATGCCCGGCTCCTTCCACACCGAGTGGTTCAAGATCGCGCGTGCTGCTAAG
ATGTGA

Peptide Sequence

PEP ID

Os06t0111500-02
PEP Infomation

pep chromosome:IRGSP-1.0:6:645195:646718:1 gene:Os06g0111500 transcript:Os06t0111500-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:6-phosphogluconate dehydrogenase 1, cytosolic 6PGDH description:Cytosolic 6-phosphogluconate dehydrogenase. (Os06t0111500-01);Similar to 6-phosphogluconate dehydrogenase, decarboxylating. (Os06t0111500-02)
Sequence

PASFVNSIQKPRVVIMLVKAGAPVDQTIATLAAHLEQGDCIIDGGNEWYENTERREKAME
ERGLLYLGMGVSGGEEGARNGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYIGKG
GSGNFVKMVHNGIEYGDMQLISEAYDVLKSVGKLTNSELQQVFSEWNKGELLSFLIEITA
DIFSIKDDQGSGHLVDKVLDKTGMKGTGKWTVQQAAELSVAAPTIEASLDSRFLSGLKDE
RVEAAKVFQGDFSSNLPVDKAQLIEDVRQALYASKICSYAQGMNIIKAKSMEKGWSLNLG
ELARIWKGGCIIRAIFLDRIKKAYDRNSDLANLLVDPEFAQEIMDRQAAWRRVVCLAINN
GVSTPGMSASLAYFDSYRRDRLPANLVQAQRDYFGAHTYERVDMPGSFHTEWFKIARAAK
M

Transcript Sequence

Transcript ID

Os06t0111500-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:645195:646718:1 gene:Os06g0111500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:6-phosphogluconate dehydrogenase 1, cytosolic 6PGDH description:Cytosolic 6-phosphogluconate dehydrogenase. (Os06t0111500-01);Similar to 6-phosphogluconate dehydrogenase, decarboxylating. (Os06t0111500-02)
Sequence

ACCCTGCATCCTTTGTGAACTCCATTCAGAAGCCACGTGTTGTCATCATGCTTGTCAAGG
CTGGTGCACCAGTGGACCAGACCATTGCAACTCTTGCAGCACACTTGGAGCAGGGTGACT
GTATTATTGATGGAGGAAATGAGTGGTACGAGAACACTGAGAGGAGGGAGAAGGCAATGG
AGGAGCGTGGCCTCCTCTATCTTGGGATGGGTGTTTCCGGAGGAGAGGAGGGTGCCCGCA
ATGGCCCGTCCTTGATGCCTGGTGGCTCATTCGAGGCGTACAAGTACATTGAAGATATTC
TTCTCAAGGTGGCTGCCCAGGTTCCTGATAGTGGCCCGTGCGTCACATACATTGGCAAAG
GTGGATCTGGAAACTTTGTCAAGATGGTTCACAACGGAATTGAGTATGGTGACATGCAAC
TGATTTCTGAGGCATATGATGTTCTCAAGTCAGTTGGTAAGCTCACAAACAGTGAGCTGC
AGCAGGTGTTTTCTGAGTGGAACAAGGGTGAGCTCCTCAGTTTCCTGATTGAGATCACAG
CCGACATATTTAGCATCAAGGATGACCAGGGTTCAGGCCACCTGGTCGACAAGGTCCTGG
ACAAGACTGGGATGAAGGGAACTGGGAAGTGGACTGTGCAGCAGGCCGCAGAGCTTTCTG
TGGCTGCTCCTACAATTGAGGCATCCTTGGATTCCAGGTTCCTCAGTGGGTTGAAGGATG
AGCGTGTTGAGGCTGCCAAGGTCTTCCAAGGTGACTTCTCCAGCAACTTGCCAGTGGACA
AGGCACAGCTGATTGAAGACGTGAGGCAGGCTCTTTACGCCTCGAAGATCTGCAGCTACG
CTCAGGGCATGAACATCATCAAGGCCAAGAGCATGGAGAAAGGGTGGAGCCTCAACCTCG
GTGAGCTAGCGAGGATCTGGAAGGGAGGGTGCATCATCCGTGCCATCTTCCTGGACCGCA
TCAAGAAGGCCTACGACAGGAACTCCGACCTCGCCAACCTGCTCGTGGACCCTGAGTTCG
CTCAGGAGATCATGGACAGGCAAGCGGCATGGCGCAGGGTGGTCTGCCTTGCCATCAACA
ATGGCGTCAGCACCCCAGGCATGTCGGCGAGTCTCGCGTACTTCGACTCCTACCGGAGGG
ACAGGCTGCCTGCCAACCTGGTGCAGGCACAGAGGGACTATTTCGGGGCTCACACCTACG
AGAGGGTCGACATGCCCGGCTCCTTCCACACCGAGTGGTTCAAGATCGCGCGTGCTGCTA
AGATGTGAAATGCTTCAAATTTTCGGTAATATTTGGTTGCTGCTTGCTGCTGAGTCGCTT
GTAGGGTGGGAGGAACTGTTGTTAAATTTTATGGTCAATGTGCTACGCTTAATTTGGATA
AGGAGGTCCATAGCTATCTCCATTCTTTTAATGTAAGGAGCAGCCCAGGGTGGAGAGAAC
ATGGATATTTATCATTGGAACCTTTGTTGTGATCTTTGTAAGTCTATATATGAATAAAAG
CATTTTGGCAATGCTTGCTTTTTT