Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0107600-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:477098:479156:1 gene:Os06g0107600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to nodulin protein. (Os06t0107600-01);Hypothetical conserved gene. (Os06t0107600-02)
Sequence

ATGGGGTGGTGGCTCGGAGGTGGCCTGCCGGTCATCGCCATGCTGGCTCTCAACGTCGTC
GCGGCGGTGTTGGTGTCGCTCGTCAAGGTCGCCATGGACGGCGGCCTCAACCCTCTCGTC
CTCGTCACTCTTCAGCAGCTCACGGCCGCCATCTTCCTCGGCCCAATTGCCTACTTCAAA
GAGAGGAAGTCCAGGCCAAAGCTCACACTGGAGATCTTCACTTATCTCTTCGTCAGTGCT
GCGCTCGGGGCAGCTCTAAGGCAGTACATGATCTTCGTTGCTTTGAGATACACCACGGCG
ACCTTCGTCACTGCCTTCTCCAATATCGCTCCTGTCCTCACATTCTTGCTTGCCATCCTA
ACACGGTCAGAATCACTGAACCTGAGGAGAAAGACAGGCATTGCAAAGCTTGTGGGCACG
CTGATATCAGTAGCAGGAGCCATGGTGCTGACATTTTACAAGGGCGTGGCTGTCACCCAC
ACAACCAAGATCCACCATGCAACAGCAGCAGCAGCAGTAGCAGCAGAAGCAGCCATGAGC
AGCAGGAACTGGACGCTGGGCACGGTGGCCATCCTGGGCAACTGCGTGTGCCTCTCCTGC
TGGTTCCTCCTCCACAGCAGGCTCGCCAAGAAGTACCCCCATGTCTACTCCTGCAATGCC
TTCATGTGCATGTTCAGCTTCCTCCAGGTGGCCGTCGTCGGCCTCTCCACACAACGCAAC
GTCTCCGTCTGGATCGTCAGGACCAAGTTCCACATACTCACCATCCTCTACGCCGGTGTG
GTGGGGTGTGGCCTTTCGTTTGTGCTACTGACATGGTGCATCGAGAAGCGCGGTCCAGTG
TTCGTCGCAGCCTTCATTCCGGTGGTGCAGATCATTGTTTCAGTGATTGACTTCACTGTC
CTCCATGAACAGCTCTTCCTTGGAAGCGTGCTGGGATCTGTACTTGTGATAGGTGGCCTT
TATCTTCTGCTGTGGGGCAAGAGGCAGGAGGCCTTGCACCTCCCTCCAAAAGTTGCTGAA
CATGATAAAGAGCAGCAACAGCAACAGCAACAGCAACAGCAGCAACAACAGCAGCAGCAA
GTGCAACTCTGA

Peptide Sequence

PEP ID

Os06t0107600-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:477098:479156:1 gene:Os06g0107600 transcript:Os06t0107600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to nodulin protein. (Os06t0107600-01);Hypothetical conserved gene. (Os06t0107600-02)
Sequence

MGWWLGGGLPVIAMLALNVVAAVLVSLVKVAMDGGLNPLVLVTLQQLTAAIFLGPIAYFK
ERKSRPKLTLEIFTYLFVSAALGAALRQYMIFVALRYTTATFVTAFSNIAPVLTFLLAIL
TRSESLNLRRKTGIAKLVGTLISVAGAMVLTFYKGVAVTHTTKIHHATAAAAVAAEAAMS
SRNWTLGTVAILGNCVCLSCWFLLHSRLAKKYPHVYSCNAFMCMFSFLQVAVVGLSTQRN
VSVWIVRTKFHILTILYAGVVGCGLSFVLLTWCIEKRGPVFVAAFIPVVQIIVSVIDFTV
LHEQLFLGSVLGSVLVIGGLYLLLWGKRQEALHLPPKVAEHDKEQQQQQQQQQQQQQQQQ
VQL

Transcript Sequence

Transcript ID

Os06t0107600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:477098:479156:1 gene:Os06g0107600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to nodulin protein. (Os06t0107600-01);Hypothetical conserved gene. (Os06t0107600-02)
Sequence

GTATCAAGGAGACAGCTTAGCTTAGCTGTTGTTGTTGCAGTCCAGTCAGAGAGCAGAGGG
CACTGCACCGAGAGGATCGAGCTTCCAAGAACAAGTGAAGCTAGCATGGGGTGGTGGCTC
GGAGGTGGCCTGCCGGTCATCGCCATGCTGGCTCTCAACGTCGTCGCGGCGGTGTTGGTG
TCGCTCGTCAAGGTCGCCATGGACGGCGGCCTCAACCCTCTCGTCCTCGTCACTCTTCAG
CAGCTCACGGCCGCCATCTTCCTCGGCCCAATTGCCTACTTCAAAGAGAGGAAGTCCAGG
CCAAAGCTCACACTGGAGATCTTCACTTATCTCTTCGTCAGTGCTGCGCTCGGGGCAGCT
CTAAGGCAGTACATGATCTTCGTTGCTTTGAGATACACCACGGCGACCTTCGTCACTGCC
TTCTCCAATATCGCTCCTGTCCTCACATTCTTGCTTGCCATCCTAACACGGTCAGAATCA
CTGAACCTGAGGAGAAAGACAGGCATTGCAAAGCTTGTGGGCACGCTGATATCAGTAGCA
GGAGCCATGGTGCTGACATTTTACAAGGGCGTGGCTGTCACCCACACAACCAAGATCCAC
CATGCAACAGCAGCAGCAGCAGTAGCAGCAGAAGCAGCCATGAGCAGCAGGAACTGGACG
CTGGGCACGGTGGCCATCCTGGGCAACTGCGTGTGCCTCTCCTGCTGGTTCCTCCTCCAC
AGCAGGCTCGCCAAGAAGTACCCCCATGTCTACTCCTGCAATGCCTTCATGTGCATGTTC
AGCTTCCTCCAGGTGGCCGTCGTCGGCCTCTCCACACAACGCAACGTCTCCGTCTGGATC
GTCAGGACCAAGTTCCACATACTCACCATCCTCTACGCCGGTGTGGTGGGGTGTGGCCTT
TCGTTTGTGCTACTGACATGGTGCATCGAGAAGCGCGGTCCAGTGTTCGTCGCAGCCTTC
ATTCCGGTGGTGCAGATCATTGTTTCAGTGATTGACTTCACTGTCCTCCATGAACAGCTC
TTCCTTGGAAGCGTGCTGGGATCTGTACTTGTGATAGGTGGCCTTTATCTTCTGCTGTGG
GGCAAGAGGCAGGAGGCCTTGCACCTCCCTCCAAAAGTTGCTGAACATGATAAAGAGCAG
CAACAGCAACAGCAACAGCAACAGCAGCAACAACAGCAGCAGCAAGTGCAACTCTGAATG
AAGAGTGGTGACAGCGTCCCCTTTGGGATTTTAACAAATAAGTTCTCCACCAACTTTTTT
TTTTGTCAATCAGGGCAGCCATGTTGTTGTACAATTAATCCGAGAGCACTATCATGCATG
AAGTTATTTAGGTTTTAATTGATCCAAAGAATACTAGAAATGATCTAAACCAACACTGAG
TTAATTAGCTACCACTTCAGAAATAGATCCTGTATGCAATAGTTTAACTGCAACCATATA
AGAATTCTACGTGTGATTTATGGATAAACCGTGTAATTCCATG