Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0104300-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:297316:301778:-1 gene:Os06g0104300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pectinesterase-like protein. (Os06t0104300-01)
Sequence

ATGGCGGCTGCTGCGGCGGCGCTCTTGGCCTTCGTCGCCGTCGCCGGCGCCTTGGTTGCG
CAGGCCACCGACCCCTACGTCTTCTTCGACTGGGACGTCTCCTTCATCACCGCTTCCCCG
CTAGGCCTTCCCCAGAAGGTTATCGCAATCAACAAGCAGTTCCCTGGCCCCGTCATGAAC
CTCACCACCAACTACAATGTGGTCGTCAATGTGCTCAACAGCTTGGATGAGCCATTACTC
ATCACTTGGGATGGGATCCAGCAAAGAAAGAATTGCTGGCAGGATGGTGTTCTTGGCACA
ACCTGCCCCATACCTCCAGGTTGGAACTGGACCTACAATTTCCAAGTCAAGGACCAGATT
GGGAGCTTCTTTTACTTCCCACCCCTTAGCCTGCAGCGTGCTGCTGGTGGTTTCGGAGGT
ATTACTGTCAACAACCGCGCCGTCATTTCTGTCCCATTCGACACACCAGATGGAGATATC
ACCTTGTTCATTGGGGACTGGTACAAGAAGAGCCACACGGACCTGAGGAAGATGCTCGAT
GATGGAAAAGAGCTCGGGATGCCTGATGGAGTTCTGATGAATGGCAAGGGGCCGTATAGG
TACAATGATTCCCTCGTCCCTGCTGGCATTGAACATGAGACTATCAAAGTTGAACCAGGA
AAAACATACCGTTTCCGTGTCCACAATGTGGGTATATCGACGAGCTTGAACTTCAGGATT
CAGAACCACAATTTGGCCCTTGTTGAAACTGAGGGATCATACACAATGAAGCAGAATTTC
ACAAATCTTGACATCCATGTGGGACAGTCCTACTCATTTTTGATCACCATGGATCAGAAT
GCAAGCAGTGACTACTACATTGTGGCCAGTGCTAGGTTTGTTAATGAATCACTGTGGACC
AAAGTTACCGGTGTTGCAATCTTGCAGTATTCAAATTCAAAGGGAAAAGCTTCTGGCCCT
CTTCCTGATCCACCAAATGATGAGTACGACAAAACTTTCTCAATGAACCAGGCACGCTCC
ATCAGGATGAATGTGAGTACTGGTGCTGCTCGTCCAAATCCTCAAGGTTCATTTCACTAT
GGCTCTATCAACGTCAGCCAGGTTTACAAGCTCAGGAATGAACCACCTGTTACTATCAAC
GGGAAAAAACGGACTACACTGAGTGGTATCTCTTTTTCCCCACCTGATACCCCTATGAGG
TTGGCGGATCTCTATGACAAGAAAGGAGTGTACACGCTTGACTTCCCTACTATGCCAATT
GATGGACCGCCAGTGATGAAAACTTCTGTCATTAACTCCACATACAAGAATTTCTTGGAA
ATTGTATTTCAGAACAATGACACGAAAGTCCAGACCTACCATATCGATGGATATGCATTT
TGGGTTGTAGGGATGGACTATGGTGAGTGGACTGAGAATAGCCGTGGGACTTACAACAAG
TGGGATGGTGTTTCTCGTTGCACCACACAGGTATTCCCTGGAGCATGGACTGCTGTGATG
CTGTCACTTGACAGCCCGGGTTTTTGGAACGTACGCACCGAAAATCTGGACACATGGTAT
CTTGGTCAGGAGACATACATCAGGGTGGTGGATCCAGATGGAGGCTATAATGTCACTGAG
ATGGTGGCTCCAGATAACATGCTCTACTGTGGCCTCCTCAAGGATAAACAGAAGGCTCAG
AAGCCTCATGGTTCATCAAGTTCATCATCCTCTGCTGCATCACCAAACCGCTATTGGCTT
GCAGTTGTGGTGTCTCTGGTAGCGGCGGTGTTCGTCCAATGA

Peptide Sequence

PEP ID

Os06t0104300-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:297316:301778:-1 gene:Os06g0104300 transcript:Os06t0104300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pectinesterase-like protein. (Os06t0104300-01)
Sequence

MAAAAAALLAFVAVAGALVAQATDPYVFFDWDVSFITASPLGLPQKVIAINKQFPGPVMN
LTTNYNVVVNVLNSLDEPLLITWDGIQQRKNCWQDGVLGTTCPIPPGWNWTYNFQVKDQI
GSFFYFPPLSLQRAAGGFGGITVNNRAVISVPFDTPDGDITLFIGDWYKKSHTDLRKMLD
DGKELGMPDGVLMNGKGPYRYNDSLVPAGIEHETIKVEPGKTYRFRVHNVGISTSLNFRI
QNHNLALVETEGSYTMKQNFTNLDIHVGQSYSFLITMDQNASSDYYIVASARFVNESLWT
KVTGVAILQYSNSKGKASGPLPDPPNDEYDKTFSMNQARSIRMNVSTGAARPNPQGSFHY
GSINVSQVYKLRNEPPVTINGKKRTTLSGISFSPPDTPMRLADLYDKKGVYTLDFPTMPI
DGPPVMKTSVINSTYKNFLEIVFQNNDTKVQTYHIDGYAFWVVGMDYGEWTENSRGTYNK
WDGVSRCTTQVFPGAWTAVMLSLDSPGFWNVRTENLDTWYLGQETYIRVVDPDGGYNVTE
MVAPDNMLYCGLLKDKQKAQKPHGSSSSSSSAASPNRYWLAVVVSLVAAVFVQ

Transcript Sequence

Transcript ID

Os06t0104300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:297316:301778:-1 gene:Os06g0104300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pectinesterase-like protein. (Os06t0104300-01)
Sequence

TTTCCTTCCCACACGCGCACACACACAGACAGACAAGAGGAGTGAGGGGGAAGAAGTGCT
TGACTTCACCACCAATGGCGGCTGCTGCGGCGGCGCTCTTGGCCTTCGTCGCCGTCGCCG
GCGCCTTGGTTGCGCAGGCCACCGACCCCTACGTCTTCTTCGACTGGGACGTCTCCTTCA
TCACCGCTTCCCCGCTAGGCCTTCCCCAGAAGGTTATCGCAATCAACAAGCAGTTCCCTG
GCCCCGTCATGAACCTCACCACCAACTACAATGTGGTCGTCAATGTGCTCAACAGCTTGG
ATGAGCCATTACTCATCACTTGGGATGGGATCCAGCAAAGAAAGAATTGCTGGCAGGATG
GTGTTCTTGGCACAACCTGCCCCATACCTCCAGGTTGGAACTGGACCTACAATTTCCAAG
TCAAGGACCAGATTGGGAGCTTCTTTTACTTCCCACCCCTTAGCCTGCAGCGTGCTGCTG
GTGGTTTCGGAGGTATTACTGTCAACAACCGCGCCGTCATTTCTGTCCCATTCGACACAC
CAGATGGAGATATCACCTTGTTCATTGGGGACTGGTACAAGAAGAGCCACACGGACCTGA
GGAAGATGCTCGATGATGGAAAAGAGCTCGGGATGCCTGATGGAGTTCTGATGAATGGCA
AGGGGCCGTATAGGTACAATGATTCCCTCGTCCCTGCTGGCATTGAACATGAGACTATCA
AAGTTGAACCAGGAAAAACATACCGTTTCCGTGTCCACAATGTGGGTATATCGACGAGCT
TGAACTTCAGGATTCAGAACCACAATTTGGCCCTTGTTGAAACTGAGGGATCATACACAA
TGAAGCAGAATTTCACAAATCTTGACATCCATGTGGGACAGTCCTACTCATTTTTGATCA
CCATGGATCAGAATGCAAGCAGTGACTACTACATTGTGGCCAGTGCTAGGTTTGTTAATG
AATCACTGTGGACCAAAGTTACCGGTGTTGCAATCTTGCAGTATTCAAATTCAAAGGGAA
AAGCTTCTGGCCCTCTTCCTGATCCACCAAATGATGAGTACGACAAAACTTTCTCAATGA
ACCAGGCACGCTCCATCAGGATGAATGTGAGTACTGGTGCTGCTCGTCCAAATCCTCAAG
GTTCATTTCACTATGGCTCTATCAACGTCAGCCAGGTTTACAAGCTCAGGAATGAACCAC
CTGTTACTATCAACGGGAAAAAACGGACTACACTGAGTGGTATCTCTTTTTCCCCACCTG
ATACCCCTATGAGGTTGGCGGATCTCTATGACAAGAAAGGAGTGTACACGCTTGACTTCC
CTACTATGCCAATTGATGGACCGCCAGTGATGAAAACTTCTGTCATTAACTCCACATACA
AGAATTTCTTGGAAATTGTATTTCAGAACAATGACACGAAAGTCCAGACCTACCATATCG
ATGGATATGCATTTTGGGTTGTAGGGATGGACTATGGTGAGTGGACTGAGAATAGCCGTG
GGACTTACAACAAGTGGGATGGTGTTTCTCGTTGCACCACACAGGTATTCCCTGGAGCAT
GGACTGCTGTGATGCTGTCACTTGACAGCCCGGGTTTTTGGAACGTACGCACCGAAAATC
TGGACACATGGTATCTTGGTCAGGAGACATACATCAGGGTGGTGGATCCAGATGGAGGCT
ATAATGTCACTGAGATGGTGGCTCCAGATAACATGCTCTACTGTGGCCTCCTCAAGGATA
AACAGAAGGCTCAGAAGCCTCATGGTTCATCAAGTTCATCATCCTCTGCTGCATCACCAA
ACCGCTATTGGCTTGCAGTTGTGGTGTCTCTGGTAGCGGCGGTGTTCGTCCAATGAAAAT
ATTTTTCCTGTTAGTGCCCTGTTGGCTGTTGTTTGCAAATTAGGAAACTGACAGAATTCG
GGTAGGTCGAAAAATTTGTAGGTTCCATGATTCGTGTGGAATACTGTCATTGTGCATCGG
CAAAGTTTGTCGGAATTTAACAGAGATTGTGTAAACCATTGCATTGAGTCTGTGTGTCGG
CACCTGCAAGGAGTGGTGCCTGAGAGTGTGTTTTCTCGCATCGATCGACTTATTAGTAGA
GATCTGGATATTGATGATTGTCATTCCATCTCAATTTAGTACTACTAGCTAGAGAAGTTT
GTCTCTCCTGTTCCTGTCTCTCTGTATGAAGTTGCAGATACTATAATATTTTGGGGCTTG
C