Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0104100-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:282348:284538:1 gene:Os06g0104100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Squalene/phytoene synthase domain containing protein. (Os06t0104100-01)
Sequence

ATGGGTAGTACAGCTGCAGCGGGTGGTAACCTGCGAACCGCCCTCTCGTACTGTGTGCAG
CAAGTTCGCAACTATGATTATCACCACTATCTCTGCCTTCTCCACCTACCTCCAGCTATG
CGCAAGGCTGCATTCGCCTTCCGAGCCTTCAACATTGAGACGGCAAAGGCCATGGATGTT
GTCTCGGACCCTAAGACTGGCCTTATGCGCCTCCTCTGGTGGAAAGATGTAGTCGACAAG
GTCTTTGCAAACAAGCTGGTTGAGCACCCTGTTGCCCAGGTGCTCTCTTCTGTTGTGTCC
GAGCACAAGATTAGCAAGCATTGGCTCAAGAGGTCTGTGGAGGCAAGGATAAACGATGCA
AACCGGGATGATTATGCCATTCCTGAGACAATTTCTGAATTGGAGAGGTATGCAGAGGAC
ACCCAATCTACCATCCTTTACATGACGTTGCAAGCTGGTGGGATACAGTCAACTATCGCT
GATCATGCCGCCTCACACATAGGCAAAGCTAGTGGGCTGCTACTGCTACTCAAGGCTTTG
CCTCACCATGTGAGTAAGCAAGGGAGGATACCGTATATCCCAGCAAGTATAGCTGAGGAG
TGCGGTCTGCTTACACGGGAAGGTGGCCGATCAGAGGTCAGGATGGGAGATGAGCTCCCA
GATGCAGTTTTCAAGGTTGCATCTGTTGCTGATGCTCACCTGCAGAAGGCGCGGGAGCTG
GCCTCTTCTGTGCCAGCGGAAGCAATCCCTGTACTCCTCCCAGGGGTACCAGCCCAGGTC
CTTCTGGACTCCTTACGACGCCGTGAATTCAACGTCTTTGATTCACGGTTGTCAAGGGGA
GTTCATGGGATATCTCCTTTGTGGTACCAGATAAAGCTCATCTGGCACTCGGTGCGGAAG
AAGTACTGA

Peptide Sequence

PEP ID

Os06t0104100-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:282348:284538:1 gene:Os06g0104100 transcript:Os06t0104100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Squalene/phytoene synthase domain containing protein. (Os06t0104100-01)
Sequence

MGSTAAAGGNLRTALSYCVQQVRNYDYHHYLCLLHLPPAMRKAAFAFRAFNIETAKAMDV
VSDPKTGLMRLLWWKDVVDKVFANKLVEHPVAQVLSSVVSEHKISKHWLKRSVEARINDA
NRDDYAIPETISELERYAEDTQSTILYMTLQAGGIQSTIADHAASHIGKASGLLLLLKAL
PHHVSKQGRIPYIPASIAEECGLLTREGGRSEVRMGDELPDAVFKVASVADAHLQKAREL
ASSVPAEAIPVLLPGVPAQVLLDSLRRREFNVFDSRLSRGVHGISPLWYQIKLIWHSVRK
KY

Transcript Sequence

Transcript ID

Os06t0104100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:282348:284538:1 gene:Os06g0104100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Squalene/phytoene synthase domain containing protein. (Os06t0104100-01)
Sequence

ATCGATCTCCCCCGCCGCCGCCGCCTTCTGGCTTCTCCCTCCGACTCCGATCCGCCGCCG
CCGCCTCCCTACCTCCATCTCCATCTCCATGACCGCCTGCGCCTCCTCCTACTCAAGTCC
GGTCCGGCAACAACCTCCTTCACTCATAAAGCCCGGAAACTACTGAGACCTCCTCTTTCA
CATCTCAAACAGAGTTCATGGGTAGTACAGCTGCAGCGGGTGGTAACCTGCGAACCGCCC
TCTCGTACTGTGTGCAGCAAGTTCGCAACTATGATTATCACCACTATCTCTGCCTTCTCC
ACCTACCTCCAGCTATGCGCAAGGCTGCATTCGCCTTCCGAGCCTTCAACATTGAGACGG
CAAAGGCCATGGATGTTGTCTCGGACCCTAAGACTGGCCTTATGCGCCTCCTCTGGTGGA
AAGATGTAGTCGACAAGGTCTTTGCAAACAAGCTGGTTGAGCACCCTGTTGCCCAGGTGC
TCTCTTCTGTTGTGTCCGAGCACAAGATTAGCAAGCATTGGCTCAAGAGGTCTGTGGAGG
CAAGGATAAACGATGCAAACCGGGATGATTATGCCATTCCTGAGACAATTTCTGAATTGG
AGAGGTATGCAGAGGACACCCAATCTACCATCCTTTACATGACGTTGCAAGCTGGTGGGA
TACAGTCAACTATCGCTGATCATGCCGCCTCACACATAGGCAAAGCTAGTGGGCTGCTAC
TGCTACTCAAGGCTTTGCCTCACCATGTGAGTAAGCAAGGGAGGATACCGTATATCCCAG
CAAGTATAGCTGAGGAGTGCGGTCTGCTTACACGGGAAGGTGGCCGATCAGAGGTCAGGA
TGGGAGATGAGCTCCCAGATGCAGTTTTCAAGGTTGCATCTGTTGCTGATGCTCACCTGC
AGAAGGCGCGGGAGCTGGCCTCTTCTGTGCCAGCGGAAGCAATCCCTGTACTCCTCCCAG
GGGTACCAGCCCAGGTCCTTCTGGACTCCTTACGACGCCGTGAATTCAACGTCTTTGATT
CACGGTTGTCAAGGGGAGTTCATGGGATATCTCCTTTGTGGTACCAGATAAAGCTCATCT
GGCACTCGGTGCGGAAGAAGTACTGACTAACTCATCCACACAAGCACCCATAAAGAGCTC
GGGTTAGTTGTGTGTCTTTTTTTTTACCAAAATGCAATAAGGTTGATAAACAGATTGAAA
AACTCTGACTTGTTGGTTGGTGCATGTATCTGAGCAATGTCGATGTACGTTCCTCTCTAG
GATACACAAGTGTTGTTCGAATTGTTCGTTTTGTTTGCGATCCGTTTTTGCACGAAGCAG
AGGAATGTAACAGGGTGGATGCTGTTTTTTTCTTTCTGTTGAGTTTGTTGTGCAATTGCT
TGCCAACGAGCTACTGGCTTTTTATGCTTGCTAAGCATTGGTCATATTCACCTAG