Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os06t0101000-01
CDS Infomation	cds chromosome:IRGSP-1.0:6:131104:138259:1 gene:Os06g0101000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, PHD-type domain containing protein. (Os06t0101000-01)
Sequence	ATGCCCGCCTCCCCATCTCCGGCGCCGCGAGCCATGAAGCGCGAGCTTGCCTTCGCACTC CAGTCGCTCTCCGCCATGTCCACCTCCCCCGGCCGCACCCGCTCCGGCCGCCCCCTCTCC TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCCCCCGCCCCTGCCCCCAAGAGGCGGAGG AGACCGGACAAGCCCCCCGACCACGACCCCGCCCCCGCCCCCGCCCCCGACAAGGATCTT CTCGTCTCCCCTCACACGCCTCCTATGGACGCCGAGGCGCCCAAGCCCATACACCTCCTC AACGACAAGGACAAGGACAAGGAGGGGGACGATGGATCTCACCAGGATACACCCACGCTA CAGTCACCCCCTCGTGGATCTGATGCTCATCCAATACCAACGGAGCTCAATGTTTCTGCT GCTGTCGCCAGGCCTCCACAACCACCCCATGCACAACCAACGGAGCTCAATGCTGTTGCC GCCGCCGCGTCTGCTCTACCAATGGAGCTTGATGCTGCTGCTGCTGCTGCTGTGCCTGCC GAATCAACGGAGCTCAATGCTGCTGCAACCGCTGTGCCCGCACAACCGACAGAGGTCAAT GCTGCTGCTGAGATTGTCAAACCAATTGGGCTCAATGCTGTCGCTGCTGAGACTGCAAAG CCAGACATGGCCATGGAATTGCAGGAACCGCCTACTGTAACTGCAGCCAATGGGAGGGAT GTTTCCCATGAATCATTTGAACAAAACCTGCAACACCAGGTCCTGGACAATGCCTTAACC GATCCTTCTTTGCTTGCCGAGAGCACTGCAACACCAGCCTCTACTGCTGGCCTCAAGCCT GCGAGGCGCTTCACACGATCGCTGCTCAAGAACAAACCAGAGGAAGAGCCCACAGCTAGC AAAAGTCAAGACCCTGCTGTCTCCATGATATCGGAGGACAACAACGAGGCCTCTGTTGAT TTGGCTCTTGCCCCAGGGAAGCCACAGAGGAGGTTCACAAGGTCTCTTCTCAAGGTAAAG GTTGAGGCGCGCTCTACCAACAATTTGCTTCAATCCAAGGAGGCAATTGACAGCACATCA GACTCTTCTCGGTCAGTGAAGAAGATGGAGATGAAGATGTCTAAGAAGGTCGCCTGCCTC ACAAAGCACCCAAGCAACATTAGAGAGTTGCTCAACACTGGCCTGCTCGAGGGAATGCCA GTCAGGTACATCATCCCCAGTAGCAAGAAGGCTGTGCTGAAAGGAGTGATTACAGGCTGC AATATCCGTTGCTTTTGTTTATCCTGTAATGGTTCCAAGGATGTTTGTTCTTATTTCTTT GAACAACATGCTGGGAGCAACAAAAAACATCCTGCTGACCACATATACTTGGGGAACGGT AATAGTTTGCGGGATGTGCTGCGTGCATGTGAGAGTTCTCCCTTGGAATCTCTGGAGAAA ACAATACGTTCTTCCATTGATCCAATTGCGAAGAGAAGCTATGTTAATTGCCTAAACTGC AATGAACATCTTTCTTCATCACAAACTGAAATCTTTGGAAGCTTTTTGTGTCAACGTTGC CTTGAGCCAAAACAACATCAAGATCCCCCTTCCCCATCTTATGCTTGTAAGAGCAATTCC AGCCTGATACCAAGCTCCAAGGATTTTTTGTTGAAGAAGACACCATTAAATACAAAAGGT GGAAGTGCTGGAAAAGTAACTACAAAGGACACCGGGCTACACAAATTGGTCTTTAAAGTT CTGCTTGATGGTACTGAAGTAGCTTACTATGTTGATGGTCAGAGGAAAGTTGATGGGTAT ATCAAGGATCAAAGAATCTACTGTAATCACTGCAACCGAGTGGTTAGCCCGTCAGCATTT GAGGCTCATGCGGGTGAGGGAACAAGACGCAAGCCGTATGACAATATTTTTACATCAAAT GGAGTATCATTACATGAGCTGTCAATGAAAATATCAAAGGACATGGAATTATCTGAACGC GAAACAGATGATTTGTGCAGAGAATGTGGTCAAGGGGGAGATATTTTCCCTTGCAAAATG TGCCCAAGGTCATTTCACCCAGCCTGTGTAGGGCTGTCTGGAGTCCCCTCAGAGTGGTAT TGTGATAATTGCAGCAACCTTGTTCAAAAGGAAAAGGCTTTAGCAGAAAATAAAAATGCT AAAGCTGCTGGAAGGCAAGCTGGAGTTGATTCTATTGAACAGATAATGAAGAGAGCTATA CGGATTGTCCCAATCTCTGATGACCTTGGTGGGTGTGCCCTATGCAAGCAGAAAGATTTT AACAATTCAGTATTTGATGAGCGCACTGTGATACTCTGTGACCAATGTGAGAAAGAGTAT CATGTTGGGTGTTTGCGGAGCCAGTGGCAAGTTGACCTGAAGGAATTACCAGAAGGGGAG TGGTTCTGTTGTAATAGTTGCTCAGAGATTCGTTCTTCCTTGGACAAGATAATCTCTGAT GGAGCTTTGATTTTGGCTGAGTCAGATATTGATATCATAAGGAAGAAACATGAGATGAAA GGGTTAAGCATGGACACTAATACAGATCTGAGATGGCGATTACTTGCTGGTAGAAAGGCT TCTGAAGATGGTGACTTATTGCTCTCTGCTGCAGTCCCAATTATTCATCAATCTTTTGAT CCAATCATTGAAGTTCAGAGCGGGAGGGATCTAATTCCTGAGATGGTCAATGGGAGGAGA CCCAAGGATGGAATGCCTGGCCAAGATTATAGTGGAATGTACTGTGCAGTGTTAACTTTA GGCACTTCTGTTGTGTCAGCTGCATTGTTGCGAGTCATGGGAGGTGAAGTGGCCGAACTG CCACTAGTTGCTACAAGTAAAGACCTTCAAGGACTGGGCTACTTCCAAGCTTTGTTCTCG TGCATAGAGAGGATGCTTATTTCTCTGAAGATCAAACACTTCATGCTTCCAGCCGCCCAG GAAGCTGAAGGCATCTGGATGAACAAATTTGGCTTCACTAAAATTCCTCAGGAACAGTCG GATGCTTATCTTAATGGGGCACACCTGACTATATTCCATGGAACGTCAAATCTGTACAAG GCTATTCCTTCGTCATAA

Peptide Sequence

PEP ID	Os06t0101000-01
PEP Infomation	pep chromosome:IRGSP-1.0:6:131104:138259:1 gene:Os06g0101000 transcript:Os06t0101000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, PHD-type domain containing protein. (Os06t0101000-01)
Sequence	MPASPSPAPRAMKRELAFALQSLSAMSTSPGRTRSGRPLSSSSSSSSSSSAPAPAPKRRR RPDKPPDHDPAPAPAPDKDLLVSPHTPPMDAEAPKPIHLLNDKDKDKEGDDGSHQDTPTL QSPPRGSDAHPIPTELNVSAAVARPPQPPHAQPTELNAVAAAASALPMELDAAAAAAVPA ESTELNAAATAVPAQPTEVNAAAEIVKPIGLNAVAAETAKPDMAMELQEPPTVTAANGRD VSHESFEQNLQHQVLDNALTDPSLLAESTATPASTAGLKPARRFTRSLLKNKPEEEPTAS KSQDPAVSMISEDNNEASVDLALAPGKPQRRFTRSLLKVKVEARSTNNLLQSKEAIDSTS DSSRSVKKMEMKMSKKVACLTKHPSNIRELLNTGLLEGMPVRYIIPSSKKAVLKGVITGC NIRCFCLSCNGSKDVCSYFFEQHAGSNKKHPADHIYLGNGNSLRDVLRACESSPLESLEK TIRSSIDPIAKRSYVNCLNCNEHLSSSQTEIFGSFLCQRCLEPKQHQDPPSPSYACKSNS SLIPSSKDFLLKKTPLNTKGGSAGKVTTKDTGLHKLVFKVLLDGTEVAYYVDGQRKVDGY IKDQRIYCNHCNRVVSPSAFEAHAGEGTRRKPYDNIFTSNGVSLHELSMKISKDMELSER ETDDLCRECGQGGDIFPCKMCPRSFHPACVGLSGVPSEWYCDNCSNLVQKEKALAENKNA KAAGRQAGVDSIEQIMKRAIRIVPISDDLGGCALCKQKDFNNSVFDERTVILCDQCEKEY HVGCLRSQWQVDLKELPEGEWFCCNSCSEIRSSLDKIISDGALILAESDIDIIRKKHEMK GLSMDTNTDLRWRLLAGRKASEDGDLLLSAAVPIIHQSFDPIIEVQSGRDLIPEMVNGRR PKDGMPGQDYSGMYCAVLTLGTSVVSAALLRVMGGEVAELPLVATSKDLQGLGYFQALFS CIERMLISLKIKHFMLPAAQEAEGIWMNKFGFTKIPQEQSDAYLNGAHLTIFHGTSNLYK AIPSS

Transcript Sequence

Transcript ID	Os06t0101000-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:6:131104:138259:1 gene:Os06g0101000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, PHD-type domain containing protein. (Os06t0101000-01)
Sequence	ATTGGGGAGGGCAGGGGTCAGGGGGGCGCAGAGGCCTGCTTCGTTGCTCCGCCGCCGCCG CCTCCTCCTCCTCGGTTCCTCCTCCCATCTCCTCCGATCTCCTCCTCTCCAAACCCTATC AAATCCGATCCCGATCTCAGAGCAGGTGCGCGTGCGCCCGCCTCCTCCTCTAGATTTCGA TCTCCACCAACAATAAGGGATCCCATCCCATCCCATGCCCGCCTCCCCATCTCCGGCGCC GCGAGCCATGAAGCGCGAGCTTGCCTTCGCACTCCAGTCGCTCTCCGCCATGTCCACCTC CCCCGGCCGCACCCGCTCCGGCCGCCCCCTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC CTCCGCCCCCGCCCCTGCCCCCAAGAGGCGGAGGAGACCGGACAAGCCCCCCGACCACGA CCCCGCCCCCGCCCCCGCCCCCGACAAGGATCTTCTCGTCTCCCCTCACACGCCTCCTAT GGACGCCGAGGCGCCCAAGCCCATACACCTCCTCAACGACAAGGACAAGGACAAGGAGGG GGACGATGGATCTCACCAGGATACACCCACGCTACAGTCACCCCCTCGTGGATCTGATGC TCATCCAATACCAACGGAGCTCAATGTTTCTGCTGCTGTCGCCAGGCCTCCACAACCACC CCATGCACAACCAACGGAGCTCAATGCTGTTGCCGCCGCCGCGTCTGCTCTACCAATGGA GCTTGATGCTGCTGCTGCTGCTGCTGTGCCTGCCGAATCAACGGAGCTCAATGCTGCTGC AACCGCTGTGCCCGCACAACCGACAGAGGTCAATGCTGCTGCTGAGATTGTCAAACCAAT TGGGCTCAATGCTGTCGCTGCTGAGACTGCAAAGCCAGACATGGCCATGGAATTGCAGGA ACCGCCTACTGTAACTGCAGCCAATGGGAGGGATGTTTCCCATGAATCATTTGAACAAAA CCTGCAACACCAGGTCCTGGACAATGCCTTAACCGATCCTTCTTTGCTTGCCGAGAGCAC TGCAACACCAGCCTCTACTGCTGGCCTCAAGCCTGCGAGGCGCTTCACACGATCGCTGCT CAAGAACAAACCAGAGGAAGAGCCCACAGCTAGCAAAAGTCAAGACCCTGCTGTCTCCAT GATATCGGAGGACAACAACGAGGCCTCTGTTGATTTGGCTCTTGCCCCAGGGAAGCCACA GAGGAGGTTCACAAGGTCTCTTCTCAAGGTAAAGGTTGAGGCGCGCTCTACCAACAATTT GCTTCAATCCAAGGAGGCAATTGACAGCACATCAGACTCTTCTCGGTCAGTGAAGAAGAT GGAGATGAAGATGTCTAAGAAGGTCGCCTGCCTCACAAAGCACCCAAGCAACATTAGAGA GTTGCTCAACACTGGCCTGCTCGAGGGAATGCCAGTCAGGTACATCATCCCCAGTAGCAA GAAGGCTGTGCTGAAAGGAGTGATTACAGGCTGCAATATCCGTTGCTTTTGTTTATCCTG TAATGGTTCCAAGGATGTTTGTTCTTATTTCTTTGAACAACATGCTGGGAGCAACAAAAA ACATCCTGCTGACCACATATACTTGGGGAACGGTAATAGTTTGCGGGATGTGCTGCGTGC ATGTGAGAGTTCTCCCTTGGAATCTCTGGAGAAAACAATACGTTCTTCCATTGATCCAAT TGCGAAGAGAAGCTATGTTAATTGCCTAAACTGCAATGAACATCTTTCTTCATCACAAAC TGAAATCTTTGGAAGCTTTTTGTGTCAACGTTGCCTTGAGCCAAAACAACATCAAGATCC CCCTTCCCCATCTTATGCTTGTAAGAGCAATTCCAGCCTGATACCAAGCTCCAAGGATTT TTTGTTGAAGAAGACACCATTAAATACAAAAGGTGGAAGTGCTGGAAAAGTAACTACAAA GGACACCGGGCTACACAAATTGGTCTTTAAAGTTCTGCTTGATGGTACTGAAGTAGCTTA CTATGTTGATGGTCAGAGGAAAGTTGATGGGTATATCAAGGATCAAAGAATCTACTGTAA TCACTGCAACCGAGTGGTTAGCCCGTCAGCATTTGAGGCTCATGCGGGTGAGGGAACAAG ACGCAAGCCGTATGACAATATTTTTACATCAAATGGAGTATCATTACATGAGCTGTCAAT GAAAATATCAAAGGACATGGAATTATCTGAACGCGAAACAGATGATTTGTGCAGAGAATG TGGTCAAGGGGGAGATATTTTCCCTTGCAAAATGTGCCCAAGGTCATTTCACCCAGCCTG TGTAGGGCTGTCTGGAGTCCCCTCAGAGTGGTATTGTGATAATTGCAGCAACCTTGTTCA AAAGGAAAAGGCTTTAGCAGAAAATAAAAATGCTAAAGCTGCTGGAAGGCAAGCTGGAGT TGATTCTATTGAACAGATAATGAAGAGAGCTATACGGATTGTCCCAATCTCTGATGACCT TGGTGGGTGTGCCCTATGCAAGCAGAAAGATTTTAACAATTCAGTATTTGATGAGCGCAC TGTGATACTCTGTGACCAATGTGAGAAAGAGTATCATGTTGGGTGTTTGCGGAGCCAGTG GCAAGTTGACCTGAAGGAATTACCAGAAGGGGAGTGGTTCTGTTGTAATAGTTGCTCAGA GATTCGTTCTTCCTTGGACAAGATAATCTCTGATGGAGCTTTGATTTTGGCTGAGTCAGA TATTGATATCATAAGGAAGAAACATGAGATGAAAGGGTTAAGCATGGACACTAATACAGA TCTGAGATGGCGATTACTTGCTGGTAGAAAGGCTTCTGAAGATGGTGACTTATTGCTCTC TGCTGCAGTCCCAATTATTCATCAATCTTTTGATCCAATCATTGAAGTTCAGAGCGGGAG GGATCTAATTCCTGAGATGGTCAATGGGAGGAGACCCAAGGATGGAATGCCTGGCCAAGA TTATAGTGGAATGTACTGTGCAGTGTTAACTTTAGGCACTTCTGTTGTGTCAGCTGCATT GTTGCGAGTCATGGGAGGTGAAGTGGCCGAACTGCCACTAGTTGCTACAAGTAAAGACCT TCAAGGACTGGGCTACTTCCAAGCTTTGTTCTCGTGCATAGAGAGGATGCTTATTTCTCT GAAGATCAAACACTTCATGCTTCCAGCCGCCCAGGAAGCTGAAGGCATCTGGATGAACAA ATTTGGCTTCACTAAAATTCCTCAGGAACAGTCGGATGCTTATCTTAATGGGGCACACCT GACTATATTCCATGGAACGTCAAATCTGTACAAGGCTATTCCTTCGTCATAATATTGGTT TGAAGCCTTGTGCTGTGCATGTATGCAGTCAGACAGATTTGTGTTTTGAAGCTCTGCTGA CAACTGTACATAAGATGATGAAGCATGGGCTAAAGGATGATGATAGCACACAGAAGAAAG GGGGAGAAAAGATGAAAGATAAAAGTAACTCGAGGCGGCATGATATTGGTCGACCAAAAT TCTTATCCTTCAGTTTGGAGATATGCTGGATGATGGAGGCAATGCATTTTGCTTAATTTT GTTTATCTTTTTTTAAAAAAAAAATTGGCTTTCAGCATTTTCAGTGTGGCTGCTATGCCG CTGAGAAATGCAGCTATTTTTGATGTACAGACCTCAAACATCAGAAACTGCAGGTTTAAT GCAGTGCTGACCCTGTTCTGTTTGGAGTTAGACTTTTGGTCTGTTTCTTGGGTTGGCATT ATTGCAAGATTTGGAAGGGCCTGTTTGATGTGGCTGTCAAGTTTTGATGGGAAAGAGCAT ATTGTATT