Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0597200-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:29759285:29761362:-1 gene:Os05g0597200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AT hook-containing protein 1, AT hook-containing DNA-binding protein 1 description:Similar to AT1 protein. (Os05t0597200-01)
Sequence	GTCGTCGCCGTCGCCTCACCTTCGTCGGCGCCGGGGCCGGGCGCCGCCGGCCGCCCCCAC CCGACCTACAAGGAGATGATCCTGCGGGCGCTCAAGGAGCTTCCAGATCCGATCATCTCC AGCCGCCGTGCCATCGCCAAGTACATCTCCGACAACTTCTCCGGCCTCCCTTCTCACCAC GACGCGCTCCTCACCGTTCACCTCCGCCGCCTCAGGTCACAGGGCCTTCTCCTCATGTCT GGACACTCGTACCTTCTCTCCACCTCCGCCACCGCCGCTCGAGGACGGGGACGAGGACGA CCGCCCAAGAAAGCTTCCTCCTCCGCGCCGCCTCAAAAGCGCGGACCCGGCCGACCCCGC AAGAATACAGCCCTGTTTCCGGTTCCTGTGCTTGAGGCGAAGCCTGGGCGCGGGCGACCC CGGAAGAACCCTCTCCCTGTGGCTTCCTCCACCTCCTCTGCTGCTGCTGCTGCTACGGCG TTGAGCCTGAGAGTGAAGCGGGGACCTGGGAGGCCGCGCAAGAATGCTGCTGCTACCCCG TTGAGACTGGGAGCGAAGCGGGGACCTGGGAGACCGCGCAAGAATGCCACTGCTACGCCG TTGAGCCTGGGAGTTAAGCGGGGACCTGGGAGGCCGCGCAAGAATGCTGCTGCTGCTGCC TCTCCCGTTGCTCCGCCGCCTGCATCTCCACTGAAGCGGGGTGTTGGACGCCCAAGGAAG AACGCCACTCCTCTAGTCAAGCCTGGACCTGGGAGGCCGTCTGGATTCAAACGTGGACCA GGCCGCCCTCGCAAGAATGCCACTCCTCCTGTGCTGTCAGTGCCACCCACTGCTGCTGCT GTGTTGGGAGTGAAGCGTGGCCGTGGGCGCCCTAGAAAGGATAAACCATTGCAATCTTGG TCTGTGCTCTCTGGCGGTGCTGCAATGACTAAGAGAGGGCCTGGGAGGCCAAGAAAGAAG AGGCCACTGGAAGCTGGAGGTGTTGTGGCAGCACAGGTAGACACTGCAGATGGAGGTGAG GCTGGAGCCGTTCAAAATGGAGGTGAAGTTAGGTGTCTGCTCTCTGATGGTGCTTCTTCA ATGGGGAACAGAGGGCCTGGGAGTCCTAGGAAGGAGGTGCTATTGGAAAATGAACCTACA GTTTCTACATTGGTGGGAAAGAGAGGCCGTGGCCGTCCAAAAAAGGAGAAACCATCAGCA GCAAGGCCTGCTGAAACTGGAGATGCTAAATCAATGGGGATCAAGAGAGGTCGCGGAAGA CCAAGAAAGGACAGTTCCTTTCAAGCTGTGTTTGCAGAAGCTGCAGGTCAGGTGTCAAGA GATGTCACAGCAGCTCAGCCCGAAGGAGATGCAGATTTACTGGCAAGGAAGGAACCAGAG ACTGCAGCTGTAGTTTCGGTGGAGAACAAAGAAACTAGGCCTGCAGATGCTGGGGGTGTT GTGGTTTCTGAAGAGAAGACATCGATTGATCCGGTGGAGGCTGGAAGTGTAATGCCATGT GTTAATGCAGAAGTTGATCGCATGAACTCTGACCTGCGCACTGCTAATCCATAG

Peptide Sequence

PEP ID	Os05t0597200-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:29759285:29761362:-1 gene:Os05g0597200 transcript:Os05t0597200-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AT hook-containing protein 1, AT hook-containing DNA-binding protein 1 description:Similar to AT1 protein. (Os05t0597200-01)
Sequence	VVAVASPSSAPGPGAAGRPHPTYKEMILRALKELPDPIISSRRAIAKYISDNFSGLPSHH DALLTVHLRRLRSQGLLLMSGHSYLLSTSATAARGRGRGRPPKKASSSAPPQKRGPGRPR KNTALFPVPVLEAKPGRGRPRKNPLPVASSTSSAAAAATALSLRVKRGPGRPRKNAAATP LRLGAKRGPGRPRKNATATPLSLGVKRGPGRPRKNAAAAASPVAPPPASPLKRGVGRPRK NATPLVKPGPGRPSGFKRGPGRPRKNATPPVLSVPPTAAAVLGVKRGRGRPRKDKPLQSW SVLSGGAAMTKRGPGRPRKKRPLEAGGVVAAQVDTADGGEAGAVQNGGEVRCLLSDGASS MGNRGPGSPRKEVLLENEPTVSTLVGKRGRGRPKKEKPSAARPAETGDAKSMGIKRGRGR PRKDSSFQAVFAEAAGQVSRDVTAAQPEGDADLLARKEPETAAVVSVENKETRPADAGGV VVSEEKTSIDPVEAGSVMPCVNAEVDRMNSDLRTANP

Transcript Sequence

Transcript ID	Os05t0597200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:29759285:29761362:-1 gene:Os05g0597200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AT hook-containing protein 1, AT hook-containing DNA-binding protein 1 description:Similar to AT1 protein. (Os05t0597200-01)
Sequence	GGTCGTCGCCGTCGCCTCACCTTCGTCGGCGCCGGGGCCGGGCGCCGCCGGCCGCCCCCA CCCGACCTACAAGGAGATGATCCTGCGGGCGCTCAAGGAGCTTCCAGATCCGATCATCTC CAGCCGCCGTGCCATCGCCAAGTACATCTCCGACAACTTCTCCGGCCTCCCTTCTCACCA CGACGCGCTCCTCACCGTTCACCTCCGCCGCCTCAGGTCACAGGGCCTTCTCCTCATGTC TGGACACTCGTACCTTCTCTCCACCTCCGCCACCGCCGCTCGAGGACGGGGACGAGGACG ACCGCCCAAGAAAGCTTCCTCCTCCGCGCCGCCTCAAAAGCGCGGACCCGGCCGACCCCG CAAGAATACAGCCCTGTTTCCGGTTCCTGTGCTTGAGGCGAAGCCTGGGCGCGGGCGACC CCGGAAGAACCCTCTCCCTGTGGCTTCCTCCACCTCCTCTGCTGCTGCTGCTGCTACGGC GTTGAGCCTGAGAGTGAAGCGGGGACCTGGGAGGCCGCGCAAGAATGCTGCTGCTACCCC GTTGAGACTGGGAGCGAAGCGGGGACCTGGGAGACCGCGCAAGAATGCCACTGCTACGCC GTTGAGCCTGGGAGTTAAGCGGGGACCTGGGAGGCCGCGCAAGAATGCTGCTGCTGCTGC CTCTCCCGTTGCTCCGCCGCCTGCATCTCCACTGAAGCGGGGTGTTGGACGCCCAAGGAA GAACGCCACTCCTCTAGTCAAGCCTGGACCTGGGAGGCCGTCTGGATTCAAACGTGGACC AGGCCGCCCTCGCAAGAATGCCACTCCTCCTGTGCTGTCAGTGCCACCCACTGCTGCTGC TGTGTTGGGAGTGAAGCGTGGCCGTGGGCGCCCTAGAAAGGATAAACCATTGCAATCTTG GTCTGTGCTCTCTGGCGGTGCTGCAATGACTAAGAGAGGGCCTGGGAGGCCAAGAAAGAA GAGGCCACTGGAAGCTGGAGGTGTTGTGGCAGCACAGGTAGACACTGCAGATGGAGGTGA GGCTGGAGCCGTTCAAAATGGAGGTGAAGTTAGGTGTCTGCTCTCTGATGGTGCTTCTTC AATGGGGAACAGAGGGCCTGGGAGTCCTAGGAAGGAGGTGCTATTGGAAAATGAACCTAC AGTTTCTACATTGGTGGGAAAGAGAGGCCGTGGCCGTCCAAAAAAGGAGAAACCATCAGC AGCAAGGCCTGCTGAAACTGGAGATGCTAAATCAATGGGGATCAAGAGAGGTCGCGGAAG ACCAAGAAAGGACAGTTCCTTTCAAGCTGTGTTTGCAGAAGCTGCAGGTCAGGTGTCAAG AGATGTCACAGCAGCTCAGCCCGAAGGAGATGCAGATTTACTGGCAAGGAAGGAACCAGA GACTGCAGCTGTAGTTTCGGTGGAGAACAAAGAAACTAGGCCTGCAGATGCTGGGGGTGT TGTGGTTTCTGAAGAGAAGACATCGATTGATCCGGTGGAGGCTGGAAGTGTAATGCCATG TGTTAATGCAGAAGTTGATCGCATGAACTCTGACCTGCGCACTGCTAATCCATAGTGTGG CTGGCGTCAGCACTCAGCACAGAAGGGAGGACCTGGATGGCTGGCACTACCTGCAGGTGT GAATGTGTATTCACTGATTTAGCTGGAGACATACTGTGAAAACTGTTAAATGTTGCAACC AAAATTATTACTGTCATGCTGTTAAGTAGTTTCTCAAGATCAACATTGGAGTATGCTTTT AATGATATCCACTTCTCGGATAAATTTTTATAATAGTCCTTAGGTAGCACATATAGTTCC TTTAGGAATGACTGGATATATCATATATGTTGCTTTTAGTGCACCCAGTGGTGATGAGAT GCATCAATGTTTACTTCCAATTTGAACAT