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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0597000-00
CDS Infomation

cds chromosome:IRGSP-1.0:5:29749747:29750525:1 gene:Os05g0597000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:basic helix-loop-helix protein 055 description:Similar to DNA binding protein. (Os05t0597000-00)
Sequence

ATGTCGCACATCGCCGTGGAGCGCAACCGGCGGCGGCAGATGAACGACCACCTCAAGGTG
CTCCGCTCGCTCACGCCCGCATTCTACATCAAACGGGGCGACCAGGCGTCGATCATCGGC
GGCGCCATCGACTTCATCAAGGAGCTACAGACGCTACTGCAATCGCTGGAGGCCCAGAAG
AAGCGCAGGCAGCAGCCGCAGGCGCACCTAATCTCGCCGGCATCGATATCGGCCTCCGGC
GGCGGCAGCCCCAGCCCCACGCCCAGCCCGCGCTCCCTCATCACCTCCTGCTCTCCCACT
GCCGCCGCCGGCAGCAGCGCCGGCAGCTCATCCTCCATCTCCCCCAAGGACGAAAATAAG
CAGCAGCTGCAGCTGGTAGCAGAGCTCGCCGCCTGCTGCAACTCCCCCATGGCCGACGTG
GAGGCTAGGATCTCCGGCGCCAACGTGCTTCTTCGCACGCTCTCTAGGCGCGCCCCTCCC
GTCAGGATCATCGCCCTTCTCGAGAGCCTCCATCTCGAGGTGCTCCATCTCAACATCACC
ACCATGGACGACACCGTCCTCTACTCCTTCGTCCTCAAGATCGGCCTCGACTGCCACCTC
AGCGTCGACGACCTTGCCATGGAGGTCCACCAGTCCTTCATGCCGCCACCTGCAGCCCAC
CCCGATAATCACCTCCATTCCTAG

Peptide Sequence

PEP ID

Os05t0597000-00
PEP Infomation

pep chromosome:IRGSP-1.0:5:29749747:29750525:1 gene:Os05g0597000 transcript:Os05t0597000-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:basic helix-loop-helix protein 055 description:Similar to DNA binding protein. (Os05t0597000-00)
Sequence

MSHIAVERNRRRQMNDHLKVLRSLTPAFYIKRGDQASIIGGAIDFIKELQTLLQSLEAQK
KRRQQPQAHLISPASISASGGGSPSPTPSPRSLITSCSPTAAAGSSAGSSSSISPKDENK
QQLQLVAELAACCNSPMADVEARISGANVLLRTLSRRAPPVRIIALLESLHLEVLHLNIT
TMDDTVLYSFVLKIGLDCHLSVDDLAMEVHQSFMPPPAAHPDNHLHS

Transcript Sequence

Transcript ID

Os05t0597000-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:29749747:29750525:1 gene:Os05g0597000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:basic helix-loop-helix protein 055 description:Similar to DNA binding protein. (Os05t0597000-00)
Sequence

ATGTCGCACATCGCCGTGGAGCGCAACCGGCGGCGGCAGATGAACGACCACCTCAAGGTG
CTCCGCTCGCTCACGCCCGCATTCTACATCAAACGGGGCGACCAGGCGTCGATCATCGGC
GGCGCCATCGACTTCATCAAGGAGCTACAGACGCTACTGCAATCGCTGGAGGCCCAGAAG
AAGCGCAGGCAGCAGCCGCAGGCGCACCTAATCTCGCCGGCATCGATATCGGCCTCCGGC
GGCGGCAGCCCCAGCCCCACGCCCAGCCCGCGCTCCCTCATCACCTCCTGCTCTCCCACT
GCCGCCGCCGGCAGCAGCGCCGGCAGCTCATCCTCCATCTCCCCCAAGGACGAAAATAAG
CAGCAGCTGCAGCTGGTAGCAGAGCTCGCCGCCTGCTGCAACTCCCCCATGGCCGACGTG
GAGGCTAGGATCTCCGGCGCCAACGTGCTTCTTCGCACGCTCTCTAGGCGCGCCCCTCCC
GTCAGGATCATCGCCCTTCTCGAGAGCCTCCATCTCGAGGTGCTCCATCTCAACATCACC
ACCATGGACGACACCGTCCTCTACTCCTTCGTCCTCAAGATCGGCCTCGACTGCCACCTC
AGCGTCGACGACCTTGCCATGGAGGTCCACCAGTCCTTCATGCCGCCACCTGCAGCCCAC
CCCGATAATCACCTCCATTCCTAG