Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0596600-02
CDS Infomation	cds chromosome:IRGSP-1.0:5:29728250:29740775:-1 gene:Os05g0596600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:structural maintenance of chromosomes protein 5 description:Similar to SMC5 protein. (Os05t0596600-01);Similar to SMC5 protein. (Os05t0596600-02)
Sequence	ATGGCGAGCTCCCGCGCCGCCAAGCGCCCCAAGGTGGATCCCTCTTCCTCCTCCTCCGCG CCGCCGCCGCCGCCCCCGCCCCCGCAGCGTGGGGACGACGACTACGTGCCGGGCAACATC GTGGAGATCGAGCTCTGCAACTTCATGACCTACGACCACCTCACCTGCCGCCCCGGTCCC CGCCTCAACCTCGTCGTCGGCCCCAACGGCTCCGGCAAGAGCTCCCTCGTCTGCGCCATC GCCCTCGCCCTCGCCGCCGACCCCGCCATTCTCGGGAGGGCATCCAGCGTCGCTGCCTTC GTCAAGAGGGGAGAGGACTCCGGCCATGTCAAGATTTCCCTCCGCGGCAATACACCCGAC CACAAGCTCTGCATCACTAGGAAGGTCGATACCAACAACAAGTCTGAGTGGCAGCTCGAT GGCACCACTGTCCCCAAAAAGGAAGTCATTGATCTCATCAAGAAATTCAATATTCAAGTC AACAACTTGACCCAGTTTCTTCCTCAAGACCGAGTATGTGAATTTGCGAAGTTGACACCT ATCCAATTACTGGAAGAGACTGAAAAGGCTGTTGGAGATCCTAATCTACCTATCCAGCAC CGTCAGCTTATAGACAGGAGTAAGGAATTGAAGATTCTTCAAGTGGCTGTAAAGCAAAAG GAGCAGACTTTGAATAATCTAAAGGCCCTCAATGCTGAACTAGAAAAAGATGTTGAACGT GTCCGGCAGAGAGACAGACTTCTGAAAAAGGCTGAATTAATGAAGAAGAAGCTCCCATGG CTAAAATATGACATGAAGAAGAAAGAATACAAAGAAGCACAGGAGAAGGAGAAAACTGAG AAGAAAAAAATGGAGGAAGTGGCAAAAATCTGGGAAGATTCTAAAGGCCCTGTCGAAGAG CTCAAGAAAAAGAAAATGTCTCATACTTCAAATACAAAAAGGATAAACAGCCATATGGCG GAAAACATGAAGAGGCGCCAAGATATTACACACAAGGAACTACAACTGAAAGGACAATTG AGAGCTACACTGGAGGACATAGAAGATCTGAAAAGACAAGAAAGATCCCGTCAGCAAAGG ATCTTGAAGGCTAAGGAAGCCCTTGCTGCTGCTGAGAGGGAACTTGATGATCTACAACCA TATGAAGCACCTAAAGCTGAAATGATTCAACTCACGGAGGAAATTGCACGACTGACTTGC GATATAAATGAGCTAAAAAGGAAAAAGACAGATATGGAGTCCCAGTTAGTTCGAGAGAGA GAAAATCTGAGGAACTGCTCTGATAGGTTGAAGCAAATGGAAAATAAAAACAATAAGCTG CTCCAAGCATTGCGATATTCTGGTGCTGAGAAAATCAATGAAGCATACAACTGGGTGCAA GATAACCGACACATGTTCAGGGCTGAAGTTTATGGACCTGTTCTCCTTGAGGTAAATGTC CAGGATAAGGTTCACGCTTCGTACTTGGAAGGCCATGTCGCAAGCTATATATGGAAGTCA TTCATTACTCAGGATGCTTCCGATCGTGACCTTTTGGTTAGACAAATGAAGCAATATGAT ATTCCTGTTCTGAACTTCATGGGGGACAAAGGCATAAGGAGAGAACCATTCAACATCACT CTGGAGATGCAACAAGTTGGGATCTACTCACGACTTGATCAAGTTTTTGAAGCTCCTCCT GCTGTGAAAGATGTTTTAATTAGTCAGGCTAATTTGGACCGTTCGTATATAGGTACAGAT GAAACACACAATAGAGCAGATGATGTACCAAAGCTAGGCATTTCTGACTTTTGGACCCCA GATAACCACTATCGGTGGTCCAGGTCAAGATATGGCGGTCATTTGTCAGCATTTGTAGAT GCCGTCAATCCTTCCCGTCTTTTTATGTGCAATTTAGATGTTATTGACTCTGAAAGACTT CGATCTCAGAAGGATAAGCATATCAAAGATATTGACGGCATGGATGAAGACTTAAAGAAG CTTCTGAAGGAACAGAGACAATTAGAAGATGAAGCAGCAAAAATTCGCAGGAAAAAGGAA GAGATTACAGACACGATGATGTTTGAGAAGAAGAGGCAAGAAGAAACACGGAGACGTGTT GATATTAAAAGAAGAATGTTGGAGACTATATATAAAGAGGAAGATATGGAGTCAAGCAAA AGAAAGTTTGTTGATCAGGCGGCAAAGTTAAATGATCAGCGATATGAACTAGTGCTAAAA CTCAAGGATTTACTTATTGAAGCTGTTGCTCTCAAATGGAGTTGCACACAAAAGAACATG GCTTCCATTGAGCTCGATACAAAGATATGGGAGATGGAAAAGGATGTGAAGAAACTTGAA AAGAATGCTATTGAAGCTGCTAAAGAATATGAAAACTGTAAAAGAAAAACTCAAGAGCAT AAGCAGCAGTTGTCTAATGCAAAACAGCATGCAGAGTCAATAGCTATGATCACCGAAGAC CTTGCAAAAAAGTTTCTTGAGATGCCTACTACCATAGAAGAACTGGATTGTGCAATTCAA GATACTGAATCCGAAGCAAATTCTATGCTTTTTCTTAATCAAAATGTTTTGTTGGAGTAT CAAAGCCGGCAGCGTGAGATAGAATCAATATCCATAAAGCTGGAAGATGATAAAGGAGAA TGTGAAAGATGCTACTCTGATATAGAGGCTACAAAGGGCAAATGGCTTCCAACTCTGCGC ACTCTTGTTTCAAAAATAAACAGCACGTTTAGTCGTAACTTTCAAGAAATGGCTGTTGCT GGAGAAGTTTCACTTGATGAACATGGTCTTGATTTTGAGCAATATGGCATCCTTATAAAG GTCAAGTTTAGGCAAACAGGTCAGTTGCAGGTGTTGAGCGCTCATCACCAATCTGGAGGG GAGCGATCAGTTTCAACCATCCTGTACCTTGTATCACTTCAAGATCTTACCAACTGCCCC TTTCGGGTCGTTGATGAGATAAATCAAGGAATGGATCCCATAAACGAGAGGAAGATGTTC CAGCAGCTTGTGAGAGCAGCCAGTCAGCCAAACACTCCACAGTGCTTCCTCCTGACGCCC AAGTTGCTGCCTGATTTGGAATATAGTGATGCATGCAGCATCCTAAATATCATGAATGGC CCATGGATTGAGAAGCCAGCTAAAGCCTGGAGCACCGGTGATTGCTGGAGAACAGTAATG AGCGTGAGTGGGCACTGA

Peptide Sequence

PEP ID	Os05t0596600-02
PEP Infomation	pep chromosome:IRGSP-1.0:5:29728250:29740775:-1 gene:Os05g0596600 transcript:Os05t0596600-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:structural maintenance of chromosomes protein 5 description:Similar to SMC5 protein. (Os05t0596600-01);Similar to SMC5 protein. (Os05t0596600-02)
Sequence	MASSRAAKRPKVDPSSSSSAPPPPPPPPQRGDDDYVPGNIVEIELCNFMTYDHLTCRPGP RLNLVVGPNGSGKSSLVCAIALALAADPAILGRASSVAAFVKRGEDSGHVKISLRGNTPD HKLCITRKVDTNNKSEWQLDGTTVPKKEVIDLIKKFNIQVNNLTQFLPQDRVCEFAKLTP IQLLEETEKAVGDPNLPIQHRQLIDRSKELKILQVAVKQKEQTLNNLKALNAELEKDVER VRQRDRLLKKAELMKKKLPWLKYDMKKKEYKEAQEKEKTEKKKMEEVAKIWEDSKGPVEE LKKKKMSHTSNTKRINSHMAENMKRRQDITHKELQLKGQLRATLEDIEDLKRQERSRQQR ILKAKEALAAAERELDDLQPYEAPKAEMIQLTEEIARLTCDINELKRKKTDMESQLVRER ENLRNCSDRLKQMENKNNKLLQALRYSGAEKINEAYNWVQDNRHMFRAEVYGPVLLEVNV QDKVHASYLEGHVASYIWKSFITQDASDRDLLVRQMKQYDIPVLNFMGDKGIRREPFNIT LEMQQVGIYSRLDQVFEAPPAVKDVLISQANLDRSYIGTDETHNRADDVPKLGISDFWTP DNHYRWSRSRYGGHLSAFVDAVNPSRLFMCNLDVIDSERLRSQKDKHIKDIDGMDEDLKK LLKEQRQLEDEAAKIRRKKEEITDTMMFEKKRQEETRRRVDIKRRMLETIYKEEDMESSK RKFVDQAAKLNDQRYELVLKLKDLLIEAVALKWSCTQKNMASIELDTKIWEMEKDVKKLE KNAIEAAKEYENCKRKTQEHKQQLSNAKQHAESIAMITEDLAKKFLEMPTTIEELDCAIQ DTESEANSMLFLNQNVLLEYQSRQREIESISIKLEDDKGECERCYSDIEATKGKWLPTLR TLVSKINSTFSRNFQEMAVAGEVSLDEHGLDFEQYGILIKVKFRQTGQLQVLSAHHQSGG ERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTP KLLPDLEYSDACSILNIMNGPWIEKPAKAWSTGDCWRTVMSVSGH

Transcript Sequence

Transcript ID	Os05t0596600-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:29728250:29740775:-1 gene:Os05g0596600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:structural maintenance of chromosomes protein 5 description:Similar to SMC5 protein. (Os05t0596600-01);Similar to SMC5 protein. (Os05t0596600-02)
Sequence	AACCAACCTACTGGAGGAGGAGTACTGGAGTAGAGAGCGAGCATGGCGAGCTCCCGCGCC GCCAAGCGCCCCAAGGTGGATCCCTCTTCCTCCTCCTCCGCGCCGCCGCCGCCGCCCCCG CCCCCGCAGCGTGGGGACGACGACTACGTGCCGGGCAACATCGTGGAGATCGAGCTCTGC AACTTCATGACCTACGACCACCTCACCTGCCGCCCCGGTCCCCGCCTCAACCTCGTCGTC GGCCCCAACGGCTCCGGCAAGAGCTCCCTCGTCTGCGCCATCGCCCTCGCCCTCGCCGCC GACCCCGCCATTCTCGGGAGGGCATCCAGCGTCGCTGCCTTCGTCAAGAGGGGAGAGGAC TCCGGCCATGTCAAGATTTCCCTCCGCGGCAATACACCCGACCACAAGCTCTGCATCACT AGGAAGGTCGATACCAACAACAAGTCTGAGTGGCAGCTCGATGGCACCACTGTCCCCAAA AAGGAAGTCATTGATCTCATCAAGAAATTCAATATTCAAGTCAACAACTTGACCCAGTTT CTTCCTCAAGACCGAGTATGTGAATTTGCGAAGTTGACACCTATCCAATTACTGGAAGAG ACTGAAAAGGCTGTTGGAGATCCTAATCTACCTATCCAGCACCGTCAGCTTATAGACAGG AGTAAGGAATTGAAGATTCTTCAAGTGGCTGTAAAGCAAAAGGAGCAGACTTTGAATAAT CTAAAGGCCCTCAATGCTGAACTAGAAAAAGATGTTGAACGTGTCCGGCAGAGAGACAGA CTTCTGAAAAAGGCTGAATTAATGAAGAAGAAGCTCCCATGGCTAAAATATGACATGAAG AAGAAAGAATACAAAGAAGCACAGGAGAAGGAGAAAACTGAGAAGAAAAAAATGGAGGAA GTGGCAAAAATCTGGGAAGATTCTAAAGGCCCTGTCGAAGAGCTCAAGAAAAAGAAAATG TCTCATACTTCAAATACAAAAAGGATAAACAGCCATATGGCGGAAAACATGAAGAGGCGC CAAGATATTACACACAAGGAACTACAACTGAAAGGACAATTGAGAGCTACACTGGAGGAC ATAGAAGATCTGAAAAGACAAGAAAGATCCCGTCAGCAAAGGATCTTGAAGGCTAAGGAA GCCCTTGCTGCTGCTGAGAGGGAACTTGATGATCTACAACCATATGAAGCACCTAAAGCT GAAATGATTCAACTCACGGAGGAAATTGCACGACTGACTTGCGATATAAATGAGCTAAAA AGGAAAAAGACAGATATGGAGTCCCAGTTAGTTCGAGAGAGAGAAAATCTGAGGAACTGC TCTGATAGGTTGAAGCAAATGGAAAATAAAAACAATAAGCTGCTCCAAGCATTGCGATAT TCTGGTGCTGAGAAAATCAATGAAGCATACAACTGGGTGCAAGATAACCGACACATGTTC AGGGCTGAAGTTTATGGACCTGTTCTCCTTGAGGTAAATGTCCAGGATAAGGTTCACGCT TCGTACTTGGAAGGCCATGTCGCAAGCTATATATGGAAGTCATTCATTACTCAGGATGCT TCCGATCGTGACCTTTTGGTTAGACAAATGAAGCAATATGATATTCCTGTTCTGAACTTC ATGGGGGACAAAGGCATAAGGAGAGAACCATTCAACATCACTCTGGAGATGCAACAAGTT GGGATCTACTCACGACTTGATCAAGTTTTTGAAGCTCCTCCTGCTGTGAAAGATGTTTTA ATTAGTCAGGCTAATTTGGACCGTTCGTATATAGGTACAGATGAAACACACAATAGAGCA GATGATGTACCAAAGCTAGGCATTTCTGACTTTTGGACCCCAGATAACCACTATCGGTGG TCCAGGTCAAGATATGGCGGTCATTTGTCAGCATTTGTAGATGCCGTCAATCCTTCCCGT CTTTTTATGTGCAATTTAGATGTTATTGACTCTGAAAGACTTCGATCTCAGAAGGATAAG CATATCAAAGATATTGACGGCATGGATGAAGACTTAAAGAAGCTTCTGAAGGAACAGAGA CAATTAGAAGATGAAGCAGCAAAAATTCGCAGGAAAAAGGAAGAGATTACAGACACGATG ATGTTTGAGAAGAAGAGGCAAGAAGAAACACGGAGACGTGTTGATATTAAAAGAAGAATG TTGGAGACTATATATAAAGAGGAAGATATGGAGTCAAGCAAAAGAAAGTTTGTTGATCAG GCGGCAAAGTTAAATGATCAGCGATATGAACTAGTGCTAAAACTCAAGGATTTACTTATT GAAGCTGTTGCTCTCAAATGGAGTTGCACACAAAAGAACATGGCTTCCATTGAGCTCGAT ACAAAGATATGGGAGATGGAAAAGGATGTGAAGAAACTTGAAAAGAATGCTATTGAAGCT GCTAAAGAATATGAAAACTGTAAAAGAAAAACTCAAGAGCATAAGCAGCAGTTGTCTAAT GCAAAACAGCATGCAGAGTCAATAGCTATGATCACCGAAGACCTTGCAAAAAAGTTTCTT GAGATGCCTACTACCATAGAAGAACTGGATTGTGCAATTCAAGATACTGAATCCGAAGCA AATTCTATGCTTTTTCTTAATCAAAATGTTTTGTTGGAGTATCAAAGCCGGCAGCGTGAG ATAGAATCAATATCCATAAAGCTGGAAGATGATAAAGGAGAATGTGAAAGATGCTACTCT GATATAGAGGCTACAAAGGGCAAATGGCTTCCAACTCTGCGCACTCTTGTTTCAAAAATA AACAGCACGTTTAGTCGTAACTTTCAAGAAATGGCTGTTGCTGGAGAAGTTTCACTTGAT GAACATGGTCTTGATTTTGAGCAATATGGCATCCTTATAAAGGTCAAGTTTAGGCAAACA GGTCAGTTGCAGGTGTTGAGCGCTCATCACCAATCTGGAGGGGAGCGATCAGTTTCAACC ATCCTGTACCTTGTATCACTTCAAGATCTTACCAACTGCCCCTTTCGGGTCGTTGATGAG ATAAATCAAGGAATGGATCCCATAAACGAGAGGAAGATGTTCCAGCAGCTTGTGAGAGCA GCCAGTCAGCCAAACACTCCACAGTGCTTCCTCCTGACGCCCAAGTTGCTGCCTGATTTG GAATATAGTGATGCATGCAGCATCCTAAATATCATGAATGGCCCATGGATTGAGAAGCCA GCTAAAGCCTGGAGCACCGGTGATTGCTGGAGAACAGTAATGAGCGTGAGTGGGCACTGA TGGTCAAATACGGATTTGAGTACTGCACTTCGCAAGCGATTCTTCAAAAGTCAATCGTTT TACGCGGAAGCTTCAGGGTATTCAATGTGATCTTTGCTTGTACCCCATGTAGATAAATTA AGTCCAAAAACCAGAAGCTCCAATGTGCTGGACTGCTAGCCAGCTGCCTTTTGTGCTTTG TTTATTGCAGTGGTGGTTTAAACAGCTACTGGCTGACCCTTCGGCATGTCGTTAACTCAG GGACTTCATAGGACAAAGTGGCGCTAAAATCGTGACATGTTCCCAACCAGGTTTTATCGT TTGATGAAGGCCGGTTCCAATCGC