Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0596500-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:29718210:29719693:1 gene:Os05g0596500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RING finger protein OsRFPH2-1, RING-H2 protein 1 description:Similar to RING-H2 finger protein ATL3I (YGHL1-C3HC4 RING fusion protein). (Os05t0596500-01)
Sequence	ATGGGTGCGGTGTCCATGTCGACAACGACACGCCTCCCCCTCGTCGCCGCCCTCCTCTCC GCCGCTGCTTGCGTCGCAGCAGCGCAGCCGGCCACCGCCGAGGCCGCCCCGGAGACGCCC GGCGTAGGCATCAAGGTGTCGTTCCGCCCCAGCGTAGCCATCGTCGTTGGCATCTTCACC ATGATCTTCTCGCTCACCTTCCTTCTCCTCATGTACGCCAAATTCTGCCATCCATCCTCC CCCGTCGCCGCCCCCGCCCCCACGGTCGTCCCGGCGGCGGCGGCGGACGACGGCGTCGCC AAGCCGGTGATCGAGTCTCTGCCTTTCTTCCGATTCGCGGCTCTCCGCGGGGCCAGGCAG GGGCTGGAGTGCGCGGTGTGCCTGGCGCGCTTCGACGACGCGGACCTGCTCCGCCTCCTC CCGCGCTGCCGCCACGCCTTCCACCTCGACTGCGTCGACCGCTGGCTCGAGTCCAAGGCC AGCTGCCCTCTCTGCCGCGCGCGCGTCGACGCCGAAGATGCCGCGCTCGGCCTCAAGTAC GCCTCCAGCGCACGCTTCGTCCCGGCCGGGGGGGCGTCCGAGTCCGAGCGCTTTGACGGC GACCAAGACCTCCTGGGCATCTTCGTCGAGCGCGTTCCGTCGTCGCGGATGGAGCCAGCG GCAGCGGCACACTGCCCTGATCTGGACCGCTACAAGCACCGCATCGTGGTGTCGGACGCG GTGTTCAAGAGCCGATGGAGCGAGATCAACTCCTCCGACCTCATCGCGCTCGACACGGAG CTGCTTCGGTCCATGGAGACGATGGAGGTGGAGATGGAGATGGAGCTGTACAAGGAGACG GAGGAGGAGGAGACAGATCATGATCATCAGCGGAAGACACTGCTGGCGGCAAGCGGCGGC AGGTCATCAGTCGACGCGGCGGCGAGGGCGAGGATGATATCATCGTCGTCGTCGTCGGGA TCAGTGCGGTCCATGTCGGAGATGGTGAGCCTGCCGAGGCTGCGGGCGGCGATGAGGGAG CGCCTGGCGCACGAGGACCGCTGGGTCCCCATCGCTCGTCGTACAGCGCGCTGGTTCGCC GGCCGCGAGAGCCGCCACGACGAGGCTGCCCCGGTGGTTGACTCGCCGCCGGCGTCCCAT TCCAATTCCCTTGTCTAG

Peptide Sequence

PEP ID	Os05t0596500-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:29718210:29719693:1 gene:Os05g0596500 transcript:Os05t0596500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RING finger protein OsRFPH2-1, RING-H2 protein 1 description:Similar to RING-H2 finger protein ATL3I (YGHL1-C3HC4 RING fusion protein). (Os05t0596500-01)
Sequence	MGAVSMSTTTRLPLVAALLSAAACVAAAQPATAEAAPETPGVGIKVSFRPSVAIVVGIFT MIFSLTFLLLMYAKFCHPSSPVAAPAPTVVPAAAADDGVAKPVIESLPFFRFAALRGARQ GLECAVCLARFDDADLLRLLPRCRHAFHLDCVDRWLESKASCPLCRARVDAEDAALGLKY ASSARFVPAGGASESERFDGDQDLLGIFVERVPSSRMEPAAAAHCPDLDRYKHRIVVSDA VFKSRWSEINSSDLIALDTELLRSMETMEVEMEMELYKETEEEETDHDHQRKTLLAASGG RSSVDAAARARMISSSSSSGSVRSMSEMVSLPRLRAAMRERLAHEDRWVPIARRTARWFA GRESRHDEAAPVVDSPPASHSNSLV

Transcript Sequence

Transcript ID	Os05t0596500-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:29718210:29719693:1 gene:Os05g0596500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RING finger protein OsRFPH2-1, RING-H2 protein 1 description:Similar to RING-H2 finger protein ATL3I (YGHL1-C3HC4 RING fusion protein). (Os05t0596500-01)
Sequence	ACAGGCAGCAGCGTCTGAACTGAAAAAGAAAAGAGAAGAAGAAGAAACTGAAGAGAGGAA TCCGGGCGATGGGTGCGGTGTCCATGTCGACAACGACACGCCTCCCCCTCGTCGCCGCCC TCCTCTCCGCCGCTGCTTGCGTCGCAGCAGCGCAGCCGGCCACCGCCGAGGCCGCCCCGG AGACGCCCGGCGTAGGCATCAAGGTGTCGTTCCGCCCCAGCGTAGCCATCGTCGTTGGCA TCTTCACCATGATCTTCTCGCTCACCTTCCTTCTCCTCATGTACGCCAAATTCTGCCATC CATCCTCCCCCGTCGCCGCCCCCGCCCCCACGGTCGTCCCGGCGGCGGCGGCGGACGACG GCGTCGCCAAGCCGGTGATCGAGTCTCTGCCTTTCTTCCGATTCGCGGCTCTCCGCGGGG CCAGGCAGGGGCTGGAGTGCGCGGTGTGCCTGGCGCGCTTCGACGACGCGGACCTGCTCC GCCTCCTCCCGCGCTGCCGCCACGCCTTCCACCTCGACTGCGTCGACCGCTGGCTCGAGT CCAAGGCCAGCTGCCCTCTCTGCCGCGCGCGCGTCGACGCCGAAGATGCCGCGCTCGGCC TCAAGTACGCCTCCAGCGCACGCTTCGTCCCGGCCGGGGGGGCGTCCGAGTCCGAGCGCT TTGACGGCGACCAAGACCTCCTGGGCATCTTCGTCGAGCGCGTTCCGTCGTCGCGGATGG AGCCAGCGGCAGCGGCACACTGCCCTGATCTGGACCGCTACAAGCACCGCATCGTGGTGT CGGACGCGGTGTTCAAGAGCCGATGGAGCGAGATCAACTCCTCCGACCTCATCGCGCTCG ACACGGAGCTGCTTCGGTCCATGGAGACGATGGAGGTGGAGATGGAGATGGAGCTGTACA AGGAGACGGAGGAGGAGGAGACAGATCATGATCATCAGCGGAAGACACTGCTGGCGGCAA GCGGCGGCAGGTCATCAGTCGACGCGGCGGCGAGGGCGAGGATGATATCATCGTCGTCGT CGTCGGGATCAGTGCGGTCCATGTCGGAGATGGTGAGCCTGCCGAGGCTGCGGGCGGCGA TGAGGGAGCGCCTGGCGCACGAGGACCGCTGGGTCCCCATCGCTCGTCGTACAGCGCGCT GGTTCGCCGGCCGCGAGAGCCGCCACGACGAGGCTGCCCCGGTGGTTGACTCGCCGCCGG CGTCCCATTCCAATTCCCTTGTCTAGTCGTCTATCTCATCTATTCTAACTTCAAATCAAA CAAAAAGTCAAAACCCGCGCTGTGGGTCCCATTGGTCAGTGTCTTTGTTTTGTTTTGTTT TGTTTTGTTGTACCATTATTCCCTGTCTGTCCAATACTATTATCATGCTGGCCTGGTGGG GTGGAGTCAGGTACCGTAGTACATAGCATAGCTTAGGAGAGGTACTGACCAAACCTGCTA CTCCTTTTGTCCATTAATTATTTGCTACCGAGATTATTTTTAAG