Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0595000-01
CDS Infomation

cds chromosome:IRGSP-1.0:5:29625036:29625780:-1 gene:Os05g0595000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PATHOGENESIS-RELATED GENE 1-51 description:Allergen V5/Tpx-1 related family protein. (Os05t0595000-01)
Sequence

ATGGCCGCCGCCGCGATGATCCTCCCATTACTATTGCTATTGTGTTGGTTTCTGCTGCTG
TCTGTGGGCGACGCGATGTGTTGGTTCAACGACGACGCATCAGCATCGGCACCAGCGGGG
TGGTTGGTGTCGTGGACCAATGGGATGGGTTGGTACAAGGGGATGCCGCGGGAGTTCGTG
GACGGCCACAACCAGCTGCGCGCGCGCTACGGGCTGCAGCCGATGAGGTGGGATAACAAG
CTGGCGAGGCAGGCGCGGCGGTGGTCCGACGCCATGCGCGGCGACTGCCAGATCCGCCAC
TCCACCGGCAACAGCTTCGCCGAGAGCCTCTACATCGGGAGGAACGGCTGGAACGCCAGG
GCTTCCGACGCCGTCCGATGCTGGGGCGACGAGGAGCACCTCTACGACAGGGACACCGGC
AAATGCACCGCCGGCGTCGACTTCCACGAGTGCGGCCACTTCGCCTTCATGGTCAGGCCC
AACTTCACCAGGATCGGCTGCGCCCGCGCCGAGTGCTTCAACGGCGGCGTCTTCATCACC
TGCAACTACTTCAAAGACGAGCAGCACCAGCCGGCTACCCCTCCCACCTACTCCTAA

Peptide Sequence

PEP ID

Os05t0595000-01
PEP Infomation

pep chromosome:IRGSP-1.0:5:29625036:29625780:-1 gene:Os05g0595000 transcript:Os05t0595000-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PATHOGENESIS-RELATED GENE 1-51 description:Allergen V5/Tpx-1 related family protein. (Os05t0595000-01)
Sequence

MAAAAMILPLLLLLCWFLLLSVGDAMCWFNDDASASAPAGWLVSWTNGMGWYKGMPREFV
DGHNQLRARYGLQPMRWDNKLARQARRWSDAMRGDCQIRHSTGNSFAESLYIGRNGWNAR
ASDAVRCWGDEEHLYDRDTGKCTAGVDFHECGHFAFMVRPNFTRIGCARAECFNGGVFIT
CNYFKDEQHQPATPPTYS

Transcript Sequence

Transcript ID

Os05t0595000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:29625036:29625780:-1 gene:Os05g0595000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PATHOGENESIS-RELATED GENE 1-51 description:Allergen V5/Tpx-1 related family protein. (Os05t0595000-01)
Sequence

GGATCGGCGGGCGGCCTCGTCCTCGTCGGGACGACGGCAGACAATGGCCGCCGCCGCGAT
GATCCTCCCATTACTATTGCTATTGTGTTGGTTTCTGCTGCTGTCTGTGGGCGACGCGAT
GTGTTGGTTCAACGACGACGCATCAGCATCGGCACCAGCGGGGTGGTTGGTGTCGTGGAC
CAATGGGATGGGTTGGTACAAGGGGATGCCGCGGGAGTTCGTGGACGGCCACAACCAGCT
GCGCGCGCGCTACGGGCTGCAGCCGATGAGGTGGGATAACAAGCTGGCGAGGCAGGCGCG
GCGGTGGTCCGACGCCATGCGCGGCGACTGCCAGATCCGCCACTCCACCGGCAACAGCTT
CGCCGAGAGCCTCTACATCGGGAGGAACGGCTGGAACGCCAGGGCTTCCGACGCCGTCCG
ATGCTGGGGCGACGAGGAGCACCTCTACGACAGGGACACCGGCAAATGCACCGCCGGCGT
CGACTTCCACGAGTGCGGCCACTTCGCCTTCATGGTCAGGCCCAACTTCACCAGGATCGG
CTGCGCCCGCGCCGAGTGCTTCAACGGCGGCGTCTTCATCACCTGCAACTACTTCAAAGA
CGAGCAGCACCAGCCGGCTACCCCTCCCACCTACTCCTAATATGCTCTTCTTCTCTTCAA
CAACTGACCTGCCTGCCTTCCTCATTCATGTACATTGATACAGCTGCACAAACAATACAA
TACAATGGAAACCAAATCTTCACTC