Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0594700-02
CDS Infomation	cds chromosome:IRGSP-1.0:5:29609464:29616217:1 gene:Os05g0594700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 1.2 description:Similar to Hv711N16.16 (Fragment). (Os05t0594700-01);Similar to Hv711N16.16 (Fragment). (Os05t0594700-02)
Sequence	ATGGCCACTGTTTCTGACATCGGCCTCTCCGCGGCTATCAACGTCTCGATGGCCGTTGCA TTCTTGCTGGTCTTTGCTTTTCTACGATTACAGCCCATCAACGATAGGGTTTACTTTCCA AAATGGTACCTCAGAGGAATGAGAGACAGCCCTGTTTCCTCTGGTGCTGCAGTGCAAAAG GTTGTCAATTTAAACATGAGATCATACTTGAAATTTTTAAGTTGGATGCCGGCTGCTCTC AAGATGCCAGAGGATGAGTTGATCAATCATGCAGGCCTTGATTCCGCTGTCTATCTACGG ATATACCTAACAGGGATCAAGATATTCGTTCCAATATCAATTTTAGCTTCGCTTGTTCTG TTCCCTGTGAACTGGACAAATGACACCCTAGACAGCATGAAGGTAGTCCACAGTAAAATT GACAAACTTTCAATATCAAACATACCTTATGGGTCAAACAGGTTTGTTACTCACTTGGTT ATGGCTTATGCTGTCACGTTTTGGACCTGCTATGTACTGTTCCGAGAGTATGAGATAATT ACAACGATGAGATTGCGGTTTCTTGCTTCAGAGAAACGGCGACCAGACCAGTTTACAGTT CTTGTGCGGAATATACCTCCAGATCCTGATGAATCAATTAGTGAGCTCGTGGAGCATTTC TTCCTTGTTAATCATCCTGATCATTATCTAAGACACCAGGTGGTTTACAATGCAAATAAA CTTGCTGATCTGGTTGAGAAGAAGAAGAAACTGCAAAATTGGCTTGATTACTACCAGCTC AAGTATGAAAGAAATCCATCAAAAAGGCCCACCACTAAGACTGGCTTTCTTGGCTGTTTT GGTTCCGAGGTGGATGCCATTGAATACTACAAAGCAGAGATTGAGAAGATTGGGAAAGAA GAAGCTGATGAGCGTCAAAAGATCATGAAGGATCCCCAGTCAGCTGTTCCAGCAGCCTTT GTTTCATTTCGTTCACGGTGGGGGGCTGCTGTTTGTGCTCAGACACAGCAAACCAGTAAT CCAACAGTCTGGATAACTGAATGGGCTCCAGAACCTCGTGATGTCTACTGGAATAATCTA TCCATTCCATTTGTGTCCCTCACAGTTAGGAGGCTGATAGTTGCTGTGGCATTCTTCTTC CTCAACTTTTTTTATGTCATTCCAATAGCATTCGTGCAATCTCTTGCAAGCCTTGAAGGA ATAGAAAAGGCGCTTCCATTTCTGAAACCCTTAATCAAAATTGATGTCATCAAATCATTC ATCCAAGGTTTTCTTCCAGGAATTGCTTTGAAGGTCTTCCTTATATTGCTTCCAACTATA CTGATGTTTATGTCTAAGTTTGAAGGATTAATATCACAGTCATCACTGGAGCGAAGATCT GCATCTAAATATTATATCTTCTTGTTCTTCAATGTATTTTTGGGAAGCATCGTTACAGGA TCTGCTTTAGATCAGCTTAAGGCATACATTCATCAGTCGGCAAATGAAATACCGAGAACC ATCGGTGTAGCCATTCCAATGAGGGCGACTTTTTTCATAACATATGTAATGGTTGACGGT TGGACTGGTGTAGCTGGTGAAATATTGAGATTGAGGGCACTTATAATCTTCCATTTGAAA AACTTTTTCTTGGTGAAGACTGAAAAGGACAGAGAAGAGGCAATGGATCCTGGTAGTATC TGTTTTGATTGGTGTGAACCACGTATACAGCTATATTTCTTACTTGGCCTTGTCTATGCT GTGGTGACACCGTTATTGCTTCCTTTCATATTGGTATTCTTCGGGCTGGCATATGTTGTC TACCGCCACCAGATAATAAATGTCTACAATCAACAATACGAGAGTGGTGCACAGTTTTGG CCGAGTGTGCACGGGCGCATAATCATTGCATTGATCGTATCACAGCTACTTCTTATTGGA CTGTTGAGTACAAAAGGTTTCGAGGAGACGACACCAGTTCTTGTTGTTCTTCCTGTGTTG ACGTTTTGGTTTTACAAGTACTGCAAGAACCGGTTTGAGCCTGCATTTGTGAGGAACCCA CTACAGGAAGCGATGAGGAAAGACACCCTGGAACGGGCAAGGGAGCCAACCTTCGATCTG AAAGCGTACCTGGCCAATGCGTACCTGCACCCGGTGTTCAAAGGCAGGGAGGAGGAGGAC AATATGTCAATATCCGAGGATGTCGGGATGGAGGAGGTGATCGTGCCGACCAAGCGTCAA TCTCGCCGGAACACTCCCGCCCAGAGCAAGTACGAAGGCTCCGACACGCTCTCTCTTCCT GAAACTGTACACGAACGATAG

Peptide Sequence

PEP ID	Os05t0594700-02
PEP Infomation	pep chromosome:IRGSP-1.0:5:29609464:29616217:1 gene:Os05g0594700 transcript:Os05t0594700-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 1.2 description:Similar to Hv711N16.16 (Fragment). (Os05t0594700-01);Similar to Hv711N16.16 (Fragment). (Os05t0594700-02)
Sequence	MATVSDIGLSAAINVSMAVAFLLVFAFLRLQPINDRVYFPKWYLRGMRDSPVSSGAAVQK VVNLNMRSYLKFLSWMPAALKMPEDELINHAGLDSAVYLRIYLTGIKIFVPISILASLVL FPVNWTNDTLDSMKVVHSKIDKLSISNIPYGSNRFVTHLVMAYAVTFWTCYVLFREYEII TTMRLRFLASEKRRPDQFTVLVRNIPPDPDESISELVEHFFLVNHPDHYLRHQVVYNANK LADLVEKKKKLQNWLDYYQLKYERNPSKRPTTKTGFLGCFGSEVDAIEYYKAEIEKIGKE EADERQKIMKDPQSAVPAAFVSFRSRWGAAVCAQTQQTSNPTVWITEWAPEPRDVYWNNL SIPFVSLTVRRLIVAVAFFFLNFFYVIPIAFVQSLASLEGIEKALPFLKPLIKIDVIKSF IQGFLPGIALKVFLILLPTILMFMSKFEGLISQSSLERRSASKYYIFLFFNVFLGSIVTG SALDQLKAYIHQSANEIPRTIGVAIPMRATFFITYVMVDGWTGVAGEILRLRALIIFHLK NFFLVKTEKDREEAMDPGSICFDWCEPRIQLYFLLGLVYAVVTPLLLPFILVFFGLAYVV YRHQIINVYNQQYESGAQFWPSVHGRIIIALIVSQLLLIGLLSTKGFEETTPVLVVLPVL TFWFYKYCKNRFEPAFVRNPLQEAMRKDTLERAREPTFDLKAYLANAYLHPVFKGREEED NMSISEDVGMEEVIVPTKRQSRRNTPAQSKYEGSDTLSLPETVHER

Transcript Sequence

Transcript ID	Os05t0594700-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:29609464:29616217:1 gene:Os05g0594700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 1.2 description:Similar to Hv711N16.16 (Fragment). (Os05t0594700-01);Similar to Hv711N16.16 (Fragment). (Os05t0594700-02)
Sequence	GCACTGCCAACTCCCATTTTTTAAAGCTCAAAAAATCCATTCTTTTTTCTGAAATAAGAT TTTCTTTTTTTTCTTGGTTTGCATTAGCAGTATATATGCACACACACTCATTCCTACACT AACAATCTTACTACATCATATCATTAACACTTGCAGGCCTGTCTAGAGGGCAGCCATGGC CACTGTTTCTGACATCGGCCTCTCCGCGGCTATCAACGTCTCGATGGCCGTTGCATTCTT GCTGGTCTTTGCTTTTCTACGATTACAGCCCATCAACGATAGGGTTTACTTTCCAAAATG GTACCTCAGAGGAATGAGAGACAGCCCTGTTTCCTCTGGTGCTGCAGTGCAAAAGGTTGT CAATTTAAACATGAGATCATACTTGAAATTTTTAAGTTGGATGCCGGCTGCTCTCAAGAT GCCAGAGGATGAGTTGATCAATCATGCAGGCCTTGATTCCGCTGTCTATCTACGGATATA CCTAACAGGGATCAAGATATTCGTTCCAATATCAATTTTAGCTTCGCTTGTTCTGTTCCC TGTGAACTGGACAAATGACACCCTAGACAGCATGAAGGTAGTCCACAGTAAAATTGACAA ACTTTCAATATCAAACATACCTTATGGGTCAAACAGGTTTGTTACTCACTTGGTTATGGC TTATGCTGTCACGTTTTGGACCTGCTATGTACTGTTCCGAGAGTATGAGATAATTACAAC GATGAGATTGCGGTTTCTTGCTTCAGAGAAACGGCGACCAGACCAGTTTACAGTTCTTGT GCGGAATATACCTCCAGATCCTGATGAATCAATTAGTGAGCTCGTGGAGCATTTCTTCCT TGTTAATCATCCTGATCATTATCTAAGACACCAGGTGGTTTACAATGCAAATAAACTTGC TGATCTGGTTGAGAAGAAGAAGAAACTGCAAAATTGGCTTGATTACTACCAGCTCAAGTA TGAAAGAAATCCATCAAAAAGGCCCACCACTAAGACTGGCTTTCTTGGCTGTTTTGGTTC CGAGGTGGATGCCATTGAATACTACAAAGCAGAGATTGAGAAGATTGGGAAAGAAGAAGC TGATGAGCGTCAAAAGATCATGAAGGATCCCCAGTCAGCTGTTCCAGCAGCCTTTGTTTC ATTTCGTTCACGGTGGGGGGCTGCTGTTTGTGCTCAGACACAGCAAACCAGTAATCCAAC AGTCTGGATAACTGAATGGGCTCCAGAACCTCGTGATGTCTACTGGAATAATCTATCCAT TCCATTTGTGTCCCTCACAGTTAGGAGGCTGATAGTTGCTGTGGCATTCTTCTTCCTCAA CTTTTTTTATGTCATTCCAATAGCATTCGTGCAATCTCTTGCAAGCCTTGAAGGAATAGA AAAGGCGCTTCCATTTCTGAAACCCTTAATCAAAATTGATGTCATCAAATCATTCATCCA AGGTTTTCTTCCAGGAATTGCTTTGAAGGTCTTCCTTATATTGCTTCCAACTATACTGAT GTTTATGTCTAAGTTTGAAGGATTAATATCACAGTCATCACTGGAGCGAAGATCTGCATC TAAATATTATATCTTCTTGTTCTTCAATGTATTTTTGGGAAGCATCGTTACAGGATCTGC TTTAGATCAGCTTAAGGCATACATTCATCAGTCGGCAAATGAAATACCGAGAACCATCGG TGTAGCCATTCCAATGAGGGCGACTTTTTTCATAACATATGTAATGGTTGACGGTTGGAC TGGTGTAGCTGGTGAAATATTGAGATTGAGGGCACTTATAATCTTCCATTTGAAAAACTT TTTCTTGGTGAAGACTGAAAAGGACAGAGAAGAGGCAATGGATCCTGGTAGTATCTGTTT TGATTGGTGTGAACCACGTATACAGCTATATTTCTTACTTGGCCTTGTCTATGCTGTGGT GACACCGTTATTGCTTCCTTTCATATTGGTATTCTTCGGGCTGGCATATGTTGTCTACCG CCACCAGATAATAAATGTCTACAATCAACAATACGAGAGTGGTGCACAGTTTTGGCCGAG TGTGCACGGGCGCATAATCATTGCATTGATCGTATCACAGCTACTTCTTATTGGACTGTT GAGTACAAAAGGTTTCGAGGAGACGACACCAGTTCTTGTTGTTCTTCCTGTGTTGACGTT TTGGTTTTACAAGTACTGCAAGAACCGGTTTGAGCCTGCATTTGTGAGGAACCCACTACA GGAAGCGATGAGGAAAGACACCCTGGAACGGGCAAGGGAGCCAACCTTCGATCTGAAAGC GTACCTGGCCAATGCGTACCTGCACCCGGTGTTCAAAGGCAGGGAGGAGGAGGACAATAT GTCAATATCCGAGGATGTCGGGATGGAGGAGGTGATCGTGCCGACCAAGCGTCAATCTCG CCGGAACACTCCCGCCCAGAGCAAGTACGAAGGCTCCGACACGCTCTCTCTTCCTGAAAC TGTACACGAACGATAGAGCTACGGGAATATCAGGGTGACTACTAGCTTGTTGAATTCTTT ATAGTCTGTACAGATAGATTGATACATACCTACTCCTACGGGGATGTTGGCAGATAGCTT TGCTGTACACTTTACAGCACGAGAGGTATATGGAGGGATTGTTCAACACCCACAGACTGA TGATTGGATTGCCAATATTATGATTTCTTTGTTGGTT