Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0594500-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:29595609:29601356:-1 gene:Os05g0594500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Invasin/intimin cell-adhesion domain containing protein. (Os05t0594500-01);Hypothetical conserved gene. (Os05t0594500-02)
Sequence	ATGGTGTGGAAGAGCTGGGGCGGCGTCGTGTTTGCGGTTGCGGCGGCGGCGGCGGCGCTC CTGTGCTCCTCCGATGCTGCCGATGACGTGGTCTCCGTCAGCTTCTCCAAGACCCCTCCC CGCGTCTCCAGGTCGGCGTCGGCCGTCTTCACCTTCCAGGTCCTGCACACCAATGGATCA GGCCCGTGCCAGGATTGCCTCATCACCTGCAAGGTGGACGGGGAGAGGGCGTGGGAGTGC GGAAGAAACAGCAGCAGCAGCAACGGGACAGCGGTGGTGAGGTACTCGCGGCTGAAAGAC GGCAACCACACCTTGGCTGTGTGCGCGGGTGCGGGACGACCACCAACAACAACAACAACA ACAACCTGCGCCACCTACGCCTGGGATGTTGACACGGTTGCTCCGACGGCGTCCGTGAAG GCGGAGGCGGGGTTCACGAGCGGATCCAACGTGTCGGTGCTCGTCTCCTTCTCCGAGCCC TGCCCCGGCGGAGGCGGATTCACCTGCAACGCCACCTACTGCCATCTGAGCGTGTACGGT CCCGGGCGCGTGGATCCGTCGAGTCTTCAGGTCCTCCGCCCTGCCCTGCAATACTCCGTC CACGTCACCATCCCGCCGGAGTTGCTCTATGGCCGCCTCATTCTCGTCATGGCCAAGGGC TTCTGCACCGATGCTGCCGGCCACCACTTCATCAGAACCGCCAACTCTACCTTCACCCTG CGCTTCGACAGACGGAGCGACTCGATGAACATCGGCAGCAGCATCCCTGAGAAGCTGCTT CAGATCGAGGGCGCCACCAGGGTGGTGGAAGCCACCAACGACGACAAGGACCTCAGGGTA TACCTCTCCTTCGCTGAACCCGTCATGAATTCTTCCTCCCAAATCCTCGCCGCTCTCACC GCCACCGATGCCATTCTCACGCCAACCAACCGAAGCACGCTCGGGAATCGCCGCTTTGGA TACCTCGTTAAGAGGACATCCAACACCGCCGTTGTCACTGTTTCCTGTGACGGGAATTCC ATAATCAGCAGACAAGGAACTCCTGTTTCTTCTTCAGAGCCATACACTTTTCTTTACGAT AATCAAAGGCCTTCTGTTAAGCTGGCGACATCCACTGTCAGAACAAGTTCACGCAACATC CCGGTTTTGATAAAGTTTGCAAAGCCTGTCTTCAACTTCACTTCCTCTGCGGTGCAGGTT TCCGGGGGCAATCTCCTCAGCTTCCATGAAGCTAGTAAGAGCATATACACAGCGCAGATA CAGGCGGTTGATAATCTGGTTTCGGTCCACGTCGCCGAGAACTCTGCTCAGGACGTTGCA GGAAATACCAACTTACCGTCAGATCGTCTGGAAGTGAGGCATTATTCTGTTCCTGCATCA TCATCATCGATCGCGATCGTGACGACGGTAATTTTTACAGCAACCGCAGCATTCGCCACG CTGCTGACTGTTTCAACATCGTCGCTACTGGCATCAGGTGTCATCCAGAGGCCGCCTTCT TACCTCGTATCCGAGCCATCACGAAATCTCTTGAGAATGGCGTGCCACATTCAGGTATTC GCGCTGTCGCGATGGCTGTCGATAAATCTGCCGGTGGAGTACTACGAGCTGAGCAAGGGG CTGGAGTGGAGCATCCCTTACATGCGCCTCCCATGGGAAGGCCCCTCTGCCGATCCTTTC GTCGGCTACTCCACCATGCCCGCCATCGCCTACTCCGAGATGCTCGACCGCACCGCTCTC GCCGCCGACGTCCTCCGCCGCCCTCCTGCAGCTCCAGGAGTTGCAATGGCCATGCCGTCG ACGTCGCCATTGGACGGCAAGCCTCTCACCGCCATGGAGTACCGGTATCTGTTCGAGAAC CAGGACATGAAGCCCGAGGCGCAGATCATCATGAAGCTGCAGGATCTGGACGGATGGAAG TACTTCTTCAGGAACATCTTCTGGCTGGCCGTCATCGCTGCCGCCTTCCTGCTGCTGCAC GCCACCCTCCTCCTCTACCTCAAGCTGCGCCACAGGCACAGCCACACACACGTCGGTGCG CTCGTGTTCCCCAGGCTGGAGCTGATGCTCGTCATCCTCGCCATGCCCTGCGTGTCCCAG GCGTCGGCGGCGCTGATCCGAGGCGGCACAACGGCGGGGCTGGCCGTCGGGATCGTGCTG ACGGGGGTGCTAACGGCGTTCCTGGTAGCGCTGCTGCTGTTCCTGTCGCTGGGCGTCACC ACGGGGAGGCTGCTGCAGTACAAGGAGGTGCACCAGGAGGGGCGGGAGTACCACTGGTAC CAGGAGATTGTTCGCCGGACGCTGGGACCCGGCAAGCGTGGACAGTGGACGTGGAAGGAC CCCGCCCGCACCGCCTGCCTCGTCAAGCTCGGCCCGCTCTTCGAGGACCTGCGCGGCCCG CCCAAGTACATGCTCTCGCAGATCGCCGGCGGCAGCGGCGGCAAGCGCGCGGCGGAGCGG ATCATCGTGTCCGACGACGAGAACGAGGACGCCGAGGCGCCGTTCCTGCAGAAGCTGTTC GGCATACTGCGGATCTACTACACGTTCCTGGAGTCGGTGAAGCGGGTGGCGCTGGGGATC GTGGCGGGCGCGCACGCGTCGTCGGACCACTCGTCGCGGGCGCACGCCGTGGTGGTGCTC GCCATCGCCTCCTTCCAGCTCTTCTTCATGGTGCTCAAGAAGCCCTTCATCAAGAAGCGG GTGCAGCTGGTGGAGATCGTGGCGGTGGCAAGCGAGGTGTTGGTGTTCGCCGCATGCCTT CGGCTGGTGGACAGCGGGGGCAGCGCCGTGGCGGAGGGGAGCGGGGTAGGGCTGGCCATG CTGACGGTGTTCGCGGTGGCGTTGGCGGCGCAGGTGTGCAACGAGTGGAACGCGCTGTAC CGGCAGGTGCGGCTGCTGAGCTCGGACAGGAGGTCGTTCGTGGAGGGCGCGAAGGCGGCG TGGGTGGGGCTGCTGCTGCTGGTGCTGCCGTCGTCGGCGCTTGGAGAGCAGCTGGAGAAG ATGAAGAAGCAGCAGGAGCAGCCGGAGGCAGTGGCACTGGGTGGTGGTGGTGGTGGCACG GAGAGGTCGTGGCTGGGGCAGCTGAGGGAGATGGCCAAGGCGAGCTTCAGCAAGGAGGGA CAGGGAGGGGAGGCGGAGGCGTCGGGGAGCAGAGCAAAGGGTGGGAGCCGGAGCATGTCG TCGGTGGCGTCGTCGTCGGACTCCAAGGCGAAGGGACCCGAGAACTCGCATTCGCAGTGG AGCTCCAAGTCCAAGGGACTCTACAAGGATCTTGAGGCCATCTTCTCCAACAGGTAG

Peptide Sequence

PEP ID	Os05t0594500-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:29595609:29601356:-1 gene:Os05g0594500 transcript:Os05t0594500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Invasin/intimin cell-adhesion domain containing protein. (Os05t0594500-01);Hypothetical conserved gene. (Os05t0594500-02)
Sequence	MVWKSWGGVVFAVAAAAAALLCSSDAADDVVSVSFSKTPPRVSRSASAVFTFQVLHTNGS GPCQDCLITCKVDGERAWECGRNSSSSNGTAVVRYSRLKDGNHTLAVCAGAGRPPTTTTT TTCATYAWDVDTVAPTASVKAEAGFTSGSNVSVLVSFSEPCPGGGGFTCNATYCHLSVYG PGRVDPSSLQVLRPALQYSVHVTIPPELLYGRLILVMAKGFCTDAAGHHFIRTANSTFTL RFDRRSDSMNIGSSIPEKLLQIEGATRVVEATNDDKDLRVYLSFAEPVMNSSSQILAALT ATDAILTPTNRSTLGNRRFGYLVKRTSNTAVVTVSCDGNSIISRQGTPVSSSEPYTFLYD NQRPSVKLATSTVRTSSRNIPVLIKFAKPVFNFTSSAVQVSGGNLLSFHEASKSIYTAQI QAVDNLVSVHVAENSAQDVAGNTNLPSDRLEVRHYSVPASSSSIAIVTTVIFTATAAFAT LLTVSTSSLLASGVIQRPPSYLVSEPSRNLLRMACHIQVFALSRWLSINLPVEYYELSKG LEWSIPYMRLPWEGPSADPFVGYSTMPAIAYSEMLDRTALAADVLRRPPAAPGVAMAMPS TSPLDGKPLTAMEYRYLFENQDMKPEAQIIMKLQDLDGWKYFFRNIFWLAVIAAAFLLLH ATLLLYLKLRHRHSHTHVGALVFPRLELMLVILAMPCVSQASAALIRGGTTAGLAVGIVL TGVLTAFLVALLLFLSLGVTTGRLLQYKEVHQEGREYHWYQEIVRRTLGPGKRGQWTWKD PARTACLVKLGPLFEDLRGPPKYMLSQIAGGSGGKRAAERIIVSDDENEDAEAPFLQKLF GILRIYYTFLESVKRVALGIVAGAHASSDHSSRAHAVVVLAIASFQLFFMVLKKPFIKKR VQLVEIVAVASEVLVFAACLRLVDSGGSAVAEGSGVGLAMLTVFAVALAAQVCNEWNALY RQVRLLSSDRRSFVEGAKAAWVGLLLLVLPSSALGEQLEKMKKQQEQPEAVALGGGGGGT ERSWLGQLREMAKASFSKEGQGGEAEASGSRAKGGSRSMSSVASSSDSKAKGPENSHSQW SSKSKGLYKDLEAIFSNR

Transcript Sequence

Transcript ID	Os05t0594500-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:29595609:29601356:-1 gene:Os05g0594500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Invasin/intimin cell-adhesion domain containing protein. (Os05t0594500-01);Hypothetical conserved gene. (Os05t0594500-02)
Sequence	GTGCATTTGGCCCCCTCTCCCCTCCTGTCTGTCCCCCACCATTATTCCCTCCCTCCCTCC CTTCATTTTTTGTCTGTTCCAATCTACCACCATACTTACTGCACTGCGACCTCACCACAC TGAACTCAAGTCAGTAATACTGCCATTGTCAAGAGGGAGCTCTAGCTTTCCTTTCCCAAA GGCAGAGGCAGCAGCGTGGCGTGCATTCACTTCCCTCCCTGTCCAGTACTCCAGTCCATA ACACTGTTGGCTGGGTGCCTGCATGAATGAATTCAGTAGGAGTAGCTCAGTAGGTCGACA CACACCAGGTGTAACTTCTTGAGCTTTTCTCTTGCAACAGTACTGGAGTAGCATAGCAAG CTGCTGCTGCTGAGTAGCTAGGGAGTAGGAGTAGATAATAGTAGGCGCGCGTAGGATGGT GTGGAAGAGCTGGGGCGGCGTCGTGTTTGCGGTTGCGGCGGCGGCGGCGGCGCTCCTGTG CTCCTCCGATGCTGCCGATGACGTGGTCTCCGTCAGCTTCTCCAAGACCCCTCCCCGCGT CTCCAGGTCGGCGTCGGCCGTCTTCACCTTCCAGGTCCTGCACACCAATGGATCAGGCCC GTGCCAGGATTGCCTCATCACCTGCAAGGTGGACGGGGAGAGGGCGTGGGAGTGCGGAAG AAACAGCAGCAGCAGCAACGGGACAGCGGTGGTGAGGTACTCGCGGCTGAAAGACGGCAA CCACACCTTGGCTGTGTGCGCGGGTGCGGGACGACCACCAACAACAACAACAACAACAAC CTGCGCCACCTACGCCTGGGATGTTGACACGGTTGCTCCGACGGCGTCCGTGAAGGCGGA GGCGGGGTTCACGAGCGGATCCAACGTGTCGGTGCTCGTCTCCTTCTCCGAGCCCTGCCC CGGCGGAGGCGGATTCACCTGCAACGCCACCTACTGCCATCTGAGCGTGTACGGTCCCGG GCGCGTGGATCCGTCGAGTCTTCAGGTCCTCCGCCCTGCCCTGCAATACTCCGTCCACGT CACCATCCCGCCGGAGTTGCTCTATGGCCGCCTCATTCTCGTCATGGCCAAGGGCTTCTG CACCGATGCTGCCGGCCACCACTTCATCAGAACCGCCAACTCTACCTTCACCCTGCGCTT CGACAGACGGAGCGACTCGATGAACATCGGCAGCAGCATCCCTGAGAAGCTGCTTCAGAT CGAGGGCGCCACCAGGGTGGTGGAAGCCACCAACGACGACAAGGACCTCAGGGTATACCT CTCCTTCGCTGAACCCGTCATGAATTCTTCCTCCCAAATCCTCGCCGCTCTCACCGCCAC CGATGCCATTCTCACGCCAACCAACCGAAGCACGCTCGGGAATCGCCGCTTTGGATACCT CGTTAAGAGGACATCCAACACCGCCGTTGTCACTGTTTCCTGTGACGGGAATTCCATAAT CAGCAGACAAGGAACTCCTGTTTCTTCTTCAGAGCCATACACTTTTCTTTACGATAATCA AAGGCCTTCTGTTAAGCTGGCGACATCCACTGTCAGAACAAGTTCACGCAACATCCCGGT TTTGATAAAGTTTGCAAAGCCTGTCTTCAACTTCACTTCCTCTGCGGTGCAGGTTTCCGG GGGCAATCTCCTCAGCTTCCATGAAGCTAGTAAGAGCATATACACAGCGCAGATACAGGC GGTTGATAATCTGGTTTCGGTCCACGTCGCCGAGAACTCTGCTCAGGACGTTGCAGGAAA TACCAACTTACCGTCAGATCGTCTGGAAGTGAGGCATTATTCTGTTCCTGCATCATCATC ATCGATCGCGATCGTGACGACGGTAATTTTTACAGCAACCGCAGCATTCGCCACGCTGCT GACTGTTTCAACATCGTCGCTACTGGCATCAGGTGTCATCCAGAGGCCGCCTTCTTACCT CGTATCCGAGCCATCACGAAATCTCTTGAGAATGGCGTGCCACATTCAGGTATTCGCGCT GTCGCGATGGCTGTCGATAAATCTGCCGGTGGAGTACTACGAGCTGAGCAAGGGGCTGGA GTGGAGCATCCCTTACATGCGCCTCCCATGGGAAGGCCCCTCTGCCGATCCTTTCGTCGG CTACTCCACCATGCCCGCCATCGCCTACTCCGAGATGCTCGACCGCACCGCTCTCGCCGC CGACGTCCTCCGCCGCCCTCCTGCAGCTCCAGGAGTTGCAATGGCCATGCCGTCGACGTC GCCATTGGACGGCAAGCCTCTCACCGCCATGGAGTACCGGTATCTGTTCGAGAACCAGGA CATGAAGCCCGAGGCGCAGATCATCATGAAGCTGCAGGATCTGGACGGATGGAAGTACTT CTTCAGGAACATCTTCTGGCTGGCCGTCATCGCTGCCGCCTTCCTGCTGCTGCACGCCAC CCTCCTCCTCTACCTCAAGCTGCGCCACAGGCACAGCCACACACACGTCGGTGCGCTCGT GTTCCCCAGGCTGGAGCTGATGCTCGTCATCCTCGCCATGCCCTGCGTGTCCCAGGCGTC GGCGGCGCTGATCCGAGGCGGCACAACGGCGGGGCTGGCCGTCGGGATCGTGCTGACGGG GGTGCTAACGGCGTTCCTGGTAGCGCTGCTGCTGTTCCTGTCGCTGGGCGTCACCACGGG GAGGCTGCTGCAGTACAAGGAGGTGCACCAGGAGGGGCGGGAGTACCACTGGTACCAGGA GATTGTTCGCCGGACGCTGGGACCCGGCAAGCGTGGACAGTGGACGTGGAAGGACCCCGC CCGCACCGCCTGCCTCGTCAAGCTCGGCCCGCTCTTCGAGGACCTGCGCGGCCCGCCCAA GTACATGCTCTCGCAGATCGCCGGCGGCAGCGGCGGCAAGCGCGCGGCGGAGCGGATCAT CGTGTCCGACGACGAGAACGAGGACGCCGAGGCGCCGTTCCTGCAGAAGCTGTTCGGCAT ACTGCGGATCTACTACACGTTCCTGGAGTCGGTGAAGCGGGTGGCGCTGGGGATCGTGGC GGGCGCGCACGCGTCGTCGGACCACTCGTCGCGGGCGCACGCCGTGGTGGTGCTCGCCAT CGCCTCCTTCCAGCTCTTCTTCATGGTGCTCAAGAAGCCCTTCATCAAGAAGCGGGTGCA GCTGGTGGAGATCGTGGCGGTGGCAAGCGAGGTGTTGGTGTTCGCCGCATGCCTTCGGCT GGTGGACAGCGGGGGCAGCGCCGTGGCGGAGGGGAGCGGGGTAGGGCTGGCCATGCTGAC GGTGTTCGCGGTGGCGTTGGCGGCGCAGGTGTGCAACGAGTGGAACGCGCTGTACCGGCA GGTGCGGCTGCTGAGCTCGGACAGGAGGTCGTTCGTGGAGGGCGCGAAGGCGGCGTGGGT GGGGCTGCTGCTGCTGGTGCTGCCGTCGTCGGCGCTTGGAGAGCAGCTGGAGAAGATGAA GAAGCAGCAGGAGCAGCCGGAGGCAGTGGCACTGGGTGGTGGTGGTGGTGGCACGGAGAG GTCGTGGCTGGGGCAGCTGAGGGAGATGGCCAAGGCGAGCTTCAGCAAGGAGGGACAGGG AGGGGAGGCGGAGGCGTCGGGGAGCAGAGCAAAGGGTGGGAGCCGGAGCATGTCGTCGGT GGCGTCGTCGTCGGACTCCAAGGCGAAGGGACCCGAGAACTCGCATTCGCAGTGGAGCTC CAAGTCCAAGGGACTCTACAAGGATCTTGAGGCCATCTTCTCCAACAGGTAGCAGATGGG TACGGCAGCAGCTACAATATATACTATGTTCTTCGTGTATGTATATGTACTAGTATAGCA ATCAATCATTCAATGTATGCAAGACGATCAATCCAGCGATGAAGCTGGTGATGTCCCTCT TCTTCCCTGTCC