Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0587000-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:29240182:29242422:-1 gene:Os05g0587000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectin lyase fold/virulence factor domain containing protein. (Os05t0587000-01)
Sequence	ATGGTGGCGTCGCTGCGCCTCTCCCTCGCCGCGGCGGCGGCGGCGGCGCTGGCGGTGGCG GTGGCGCTGCTGTTGCCACCGCTGGCCGCGGCGCAGGGGGAGACGACGTGCCCGGCGGAC GTGCCGCCGCGCGGCGCGTGGATGTCCGTGGCGAGCTTCGGCGGCGTCGGCGACGGGCGG GCGCTCAACACGGCGGCGTTCGCGCGCGCCGTGGCGCGCATCGAGCGGCGGCGCGCGCGG GGCGGCGCGCTGCTGTACGTGCCGGCCGGGGTGTGGCTGACGGGGCCCTTCAACCTCACC TCCCACATGACGCTCTTCCTCGCCCGCGGCGCCGTCATCCGCGCCACACAGGACACATCG AGCTGGCCGTTGATAGACCCGTTGCCATCGTACGGGAGAGGACGCGAGCTGCCAGGAGGA AGATACATGAGCTTGATCCATGGTGATGGCCTCCAGGATGTGTTCATTACAGGTGAGAAT GGAACAATTGATGGGCAAGGCAGCGTGTGGTGGGATATGTGGAGGAAGCGAACACTGCCC TTCACAAGACCACATCTATTGGAGCTAATATCCTCCACTGATGTGATCATCTCCAATGTC GTCTTCCAGGATTCGCCATTTTGGAACATCCATCCGGTGTATTGCAGCAATGTAGTAATT ACGAACGTAACCGTGTTGGCTCCACATGACTCCCCAAATACCGATGGAATTGATCCAGAT TCAAGCAGCAATGTCTGCATTGAGGATTCCTACATTTCGACAGGAGATGACTTGATCTCC ATCAAGAGTGGCTGGGATGAGTATGGCATAGCCTTTGGGCGACCCAGCTCCGGCATCACG ATCAGACGTATAACAGGATCAGGACCATTTGCAGGCTTTGCAGTGGGAAGTGAAACCTCC GGTGGTGTGGAGAATGTCCATGTAGAGCACCTGAATTTCTTCGGCATGGGTGTCGGAATC CATGTCAAGACCAACTCCGGAAGGGGAGGATTCATCCGAAACATCACGGTCTCAGAAGTG ACCCTCAATGGAGCTCGATACGGTTTGCGAATCGCCGGAGATGTTGGAGGGCATCCTGAT GCATCATATGATCCGAGCAAGCTTCCTGTCGTCGACGGCGTGACGATAAAAAATGTCTGG GGTCAGAACATCCGGCAAGCCGGGCTGGTAAGGGGTATCAGGGACTCGGTTTTCAGTCGG ATTTGCCTCTCAAATGTTAAGCTCTATGGTGGTGATTCTGTTGGTCCATGGAAATGCCGA GCTGTCAGCGGTGGCGCTCTTGATGTGCAGCCATCGCCGTGCGCAGAGCTGACAAGTACA TCTGAGATGAGCTTTTGTACAAATTAG

Peptide Sequence

PEP ID	Os05t0587000-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:29240182:29242422:-1 gene:Os05g0587000 transcript:Os05t0587000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectin lyase fold/virulence factor domain containing protein. (Os05t0587000-01)
Sequence	MVASLRLSLAAAAAAALAVAVALLLPPLAAAQGETTCPADVPPRGAWMSVASFGGVGDGR ALNTAAFARAVARIERRRARGGALLYVPAGVWLTGPFNLTSHMTLFLARGAVIRATQDTS SWPLIDPLPSYGRGRELPGGRYMSLIHGDGLQDVFITGENGTIDGQGSVWWDMWRKRTLP FTRPHLLELISSTDVIISNVVFQDSPFWNIHPVYCSNVVITNVTVLAPHDSPNTDGIDPD SSSNVCIEDSYISTGDDLISIKSGWDEYGIAFGRPSSGITIRRITGSGPFAGFAVGSETS GGVENVHVEHLNFFGMGVGIHVKTNSGRGGFIRNITVSEVTLNGARYGLRIAGDVGGHPD ASYDPSKLPVVDGVTIKNVWGQNIRQAGLVRGIRDSVFSRICLSNVKLYGGDSVGPWKCR AVSGGALDVQPSPCAELTSTSEMSFCTN

Transcript Sequence

Transcript ID	Os05t0587000-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:29240182:29242422:-1 gene:Os05g0587000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectin lyase fold/virulence factor domain containing protein. (Os05t0587000-01)
Sequence	GCCGTGCTCGCCATCATCGCCGCTGTTGCTGCTGCTGCTGCTTCTTGCCAAGAAGCGATC GATGGTGGCGTCGCTGCGCCTCTCCCTCGCCGCGGCGGCGGCGGCGGCGCTGGCGGTGGC GGTGGCGCTGCTGTTGCCACCGCTGGCCGCGGCGCAGGGGGAGACGACGTGCCCGGCGGA CGTGCCGCCGCGCGGCGCGTGGATGTCCGTGGCGAGCTTCGGCGGCGTCGGCGACGGGCG GGCGCTCAACACGGCGGCGTTCGCGCGCGCCGTGGCGCGCATCGAGCGGCGGCGCGCGCG GGGCGGCGCGCTGCTGTACGTGCCGGCCGGGGTGTGGCTGACGGGGCCCTTCAACCTCAC CTCCCACATGACGCTCTTCCTCGCCCGCGGCGCCGTCATCCGCGCCACACAGGACACATC GAGCTGGCCGTTGATAGACCCGTTGCCATCGTACGGGAGAGGACGCGAGCTGCCAGGAGG AAGATACATGAGCTTGATCCATGGTGATGGCCTCCAGGATGTGTTCATTACAGGTGAGAA TGGAACAATTGATGGGCAAGGCAGCGTGTGGTGGGATATGTGGAGGAAGCGAACACTGCC CTTCACAAGACCACATCTATTGGAGCTAATATCCTCCACTGATGTGATCATCTCCAATGT CGTCTTCCAGGATTCGCCATTTTGGAACATCCATCCGGTGTATTGCAGCAATGTAGTAAT TACGAACGTAACCGTGTTGGCTCCACATGACTCCCCAAATACCGATGGAATTGATCCAGA TTCAAGCAGCAATGTCTGCATTGAGGATTCCTACATTTCGACAGGAGATGACTTGATCTC CATCAAGAGTGGCTGGGATGAGTATGGCATAGCCTTTGGGCGACCCAGCTCCGGCATCAC GATCAGACGTATAACAGGATCAGGACCATTTGCAGGCTTTGCAGTGGGAAGTGAAACCTC CGGTGGTGTGGAGAATGTCCATGTAGAGCACCTGAATTTCTTCGGCATGGGTGTCGGAAT CCATGTCAAGACCAACTCCGGAAGGGGAGGATTCATCCGAAACATCACGGTCTCAGAAGT GACCCTCAATGGAGCTCGATACGGTTTGCGAATCGCCGGAGATGTTGGAGGGCATCCTGA TGCATCATATGATCCGAGCAAGCTTCCTGTCGTCGACGGCGTGACGATAAAAAATGTCTG GGGTCAGAACATCCGGCAAGCCGGGCTGGTAAGGGGTATCAGGGACTCGGTTTTCAGTCG GATTTGCCTCTCAAATGTTAAGCTCTATGGTGGTGATTCTGTTGGTCCATGGAAATGCCG AGCTGTCAGCGGTGGCGCTCTTGATGTGCAGCCATCGCCGTGCGCAGAGCTGACAAGTAC ATCTGAGATGAGCTTTTGTACAAATTAGATCAGATACAAAAGTGAATGATAGTCATATAA TCCATCCTGAAATAAAATTCGTCATGTTCCTTTTTTTTGGCAAAAGGTTGAGTTGTTGTG CCGATTGATTAAAAATGTAACTGAAACAATGAATTGTACTTATCCAATATAATAATTCAG TACCATATGTGGCATAAAAGATC