Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0584300-01
CDS Infomation

cds chromosome:IRGSP-1.0:5:29071206:29072229:1 gene:Os05g0584300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Harpin-induced 1 domain containing protein. (Os05t0584300-01)
Sequence

ATGGCGGAACCCGAGCCCAAGAAACCCAAAGCCAAAGATCATGTCGACCTCGTCTTTGAC
GCCGCCAAGGTGAAGGCCAAGGCCAAGGCCAAAGCCATCGACGGCGATGCTGACGTCGAG
ATCGCTAAGCCGGCGGAGCAGCACGGCCACGGCAGCCGGCTGCTGCGGCGCGCGTGCTGC
GCCCTGGGCGTGGTCGCCGCGGTGGCCGCCGTGGCGATGCTGGTCCTGTCGCTCACCGTG
CTCAAGGTGAGGGATCCCACCCTGTCCATGGACTCCGTCACGGTGGAGCGCTTCCATGTG
GGGTTCGGCACGGAGGCCTCCCGGCCGCTGCGGATCAACGTGACGCTCGTCGCGGGCATC
GTGATCAAGAACCCCAACTACGAGTCCATGAGGTTCGGCACGAGCACCACGGAGTTCTAC
GTCGACGGCGTGCCGGAGTACGTCGGGCTGGGGAGCGCGCCGCCGGGGGAGGTGGCGGCG
CGGGGCACGAGCCGGGTGCGGGTCGGCATGGACGTGTTCGTCGACAGGGTGGGCGCGGCC
GTGGTCGGGGAGGTGCTGTTCGGCCGCGGCGAGGTGCGGCTGGCGAGCCACACCGCCGTG
GACGGCAGGGTGAGCGTGCTGGGCGGCCTGTACGGGCGGCGCGCGGTGCGCGTGGCGATG
AGGTGCCGCGTCGTGCTGCGCGTCTCGGCCGCGGTCGTCGTGGCCGGCTCGCCGTCGTGC
GTCGCGGACTTCAGCAGCCACTGA

Peptide Sequence

PEP ID

Os05t0584300-01
PEP Infomation

pep chromosome:IRGSP-1.0:5:29071206:29072229:1 gene:Os05g0584300 transcript:Os05t0584300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Harpin-induced 1 domain containing protein. (Os05t0584300-01)
Sequence

MAEPEPKKPKAKDHVDLVFDAAKVKAKAKAKAIDGDADVEIAKPAEQHGHGSRLLRRACC
ALGVVAAVAAVAMLVLSLTVLKVRDPTLSMDSVTVERFHVGFGTEASRPLRINVTLVAGI
VIKNPNYESMRFGTSTTEFYVDGVPEYVGLGSAPPGEVAARGTSRVRVGMDVFVDRVGAA
VVGEVLFGRGEVRLASHTAVDGRVSVLGGLYGRRAVRVAMRCRVVLRVSAAVVVAGSPSC
VADFSSH

Transcript Sequence

Transcript ID

Os05t0584300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:29071206:29072229:1 gene:Os05g0584300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Harpin-induced 1 domain containing protein. (Os05t0584300-01)
Sequence

ACACACCACAAACACGATCGATTCATGGCGGAACCCGAGCCCAAGAAACCCAAAGCCAAA
GATCATGTCGACCTCGTCTTTGACGCCGCCAAGGTGAAGGCCAAGGCCAAGGCCAAAGCC
ATCGACGGCGATGCTGACGTCGAGATCGCTAAGCCGGCGGAGCAGCACGGCCACGGCAGC
CGGCTGCTGCGGCGCGCGTGCTGCGCCCTGGGCGTGGTCGCCGCGGTGGCCGCCGTGGCG
ATGCTGGTCCTGTCGCTCACCGTGCTCAAGGTGAGGGATCCCACCCTGTCCATGGACTCC
GTCACGGTGGAGCGCTTCCATGTGGGGTTCGGCACGGAGGCCTCCCGGCCGCTGCGGATC
AACGTGACGCTCGTCGCGGGCATCGTGATCAAGAACCCCAACTACGAGTCCATGAGGTTC
GGCACGAGCACCACGGAGTTCTACGTCGACGGCGTGCCGGAGTACGTCGGGCTGGGGAGC
GCGCCGCCGGGGGAGGTGGCGGCGCGGGGCACGAGCCGGGTGCGGGTCGGCATGGACGTG
TTCGTCGACAGGGTGGGCGCGGCCGTGGTCGGGGAGGTGCTGTTCGGCCGCGGCGAGGTG
CGGCTGGCGAGCCACACCGCCGTGGACGGCAGGGTGAGCGTGCTGGGCGGCCTGTACGGG
CGGCGCGCGGTGCGCGTGGCGATGAGGTGCCGCGTCGTGCTGCGCGTCTCGGCCGCGGTC
GTCGTGGCCGGCTCGCCGTCGTGCGTCGCGGACTTCAGCAGCCACTGATCTCGCAACGGT
GCAAGGCGCGACGCGATCGAGAGCGATCCGCCATAGTTTTCAAGTTTTTCTTTACCTTAC
TGGAGACGAACGGATCGGACTAGTGAACCGTTCGCTAATTACTCTCCTCTCTAGTCTCTC
CCTTGTCAAATTATTTCTGTTGATCATATCTTCTTTTTGTTTAATTACTTTCGTTTTGTA
CCATAAGATGTACCACGTTCATCCTAACTTTGAAAGCTGAGTAAAGTACGCCGAGATTTT
TCGT