Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0582100-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:28960230:28965678:-1 gene:Os05g0582100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cas1p-like family protein. (Os05t0582100-01);Similar to predicted protein. (Os05t0582100-02)
Sequence	ATGGAGGTCTTCGGCCCCGTCACGCCCGGCCAAGTTTCGTTTTTGCTGGGTCTTTTCCCT GTCCTCATTGGATGGATCTACGCCGAAATCTTAGAATACAGGAAATCTTTGTTGTATGGG AAAGTTCACTCGGATGCTAATTTGGAGAATGAGACTATGAAGGAAGATGATAAGGCTGTA TTACTTGAAGGAGGGCAGTCAAAATCGCCATCTACAAAGCTCCGAAACATGTCTACAAAA GCAAATTTAATACGGTTTATAACAATGGACGAGTCTTTTCTGCTTGAAAACCGTGCTGTG CTAAGAGCAATGGCCGAAGTGGGCATTATTCTGGTCTACTTTTACATTTGTGACCGGACA AATATATTTCCAGAAACTAAGAAGAGCTACAACCGCGACCTGTTTCTGTTTCTGTACATT CTTCTTATCATAGCATCGGCACTTACTTCACTTAAGAAGCACAATGAAAAATCAGCTTTC ACTGGAAAGTCAATACTCTATCTTAATCGTCACCAAACTGAGGAATGGAAAGGGTGGATG CAGGTCTTGTTTCTGATGTACCACTATTTCGCTGCCACAGAAATATACAATGCAATTCGG GTGTTCATTGCTGCCTATGTCTGGATGACTGGATTCGGGAATTTCTCATATTATTATATC AAGAAAGATTTTAGCATTGCAAGATTTGCACAGATGATGTGGAGGCTAAATTTCTTTGTG GCCTTCTGTTGCATTGTCCTTGACAATGATTACATGCTGTATTATATATGTCCAATGCAC ACACTTTTTACTCTGATGGTATACGGATCACTTGGTCTGTTCAACAAGTACAATGAGAAA CCATCTGTCATGGCTATTAAGATTGCTTGCTGCTTCTTGACTGTCATTTTGATATGGGAA ATTCCTGGGGTATTTGAATTTTTATGGGCCCCCTTTACATTTCTTCTAGGATATAAGGAT CCAGAGCCTTCCAAGGCAAACTTACCCCTGCTACATGAGTGGCATTTCCGATCTGGCCTT GATCGATACATATGGATTATTGGAATGATCTATGCTTACTTCCACCCTAATGTTGAACGT TGGATGGAGAAGTTGGAGGAATCTGAGACTAAGGTTAGACTGTTTATCAAGGGAGCCATT GTCACTCTTTCTTTGACGGCTGGTTACCTATGGTATGAATATATCTACAGGCTAGACAAA ATTACATACAACAAGTACCATCCCTACACGTCATGGATTCCTATCACTGTTTATATCTGC CTACGCAACTGCACCCAGCAGTTGAGGAGTGCCTCCTTGGCTCTTTTCGCCTGGCTTGGC AAGATCACACTAGAGACATACATTTCCCAGATTCACATTTGGCTCAGGTCTAGCACGCCA AATGGGCAGCCAAAATGGCTCCTATCTTTTGTACCAGATTATCCATTGCTTAACTTCATG CTTACTACAGCAATCTATCTTCTTCTATCATACCGGGTGTTTGAGATCACAGGTGTACTG AAGGGAGCTTTTATTCCCAGTAGAGACAACAATCGGCTATATCAAAATTTTATTGCAGGG ATTGCCATATCTGCATGCCTGTATTTCTGCTCACTTATTCTTGTGAAAATTACTATTGTA TAG

Peptide Sequence

PEP ID	Os05t0582100-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:28960230:28965678:-1 gene:Os05g0582100 transcript:Os05t0582100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cas1p-like family protein. (Os05t0582100-01);Similar to predicted protein. (Os05t0582100-02)
Sequence	MEVFGPVTPGQVSFLLGLFPVLIGWIYAEILEYRKSLLYGKVHSDANLENETMKEDDKAV LLEGGQSKSPSTKLRNMSTKANLIRFITMDESFLLENRAVLRAMAEVGIILVYFYICDRT NIFPETKKSYNRDLFLFLYILLIIASALTSLKKHNEKSAFTGKSILYLNRHQTEEWKGWM QVLFLMYHYFAATEIYNAIRVFIAAYVWMTGFGNFSYYYIKKDFSIARFAQMMWRLNFFV AFCCIVLDNDYMLYYICPMHTLFTLMVYGSLGLFNKYNEKPSVMAIKIACCFLTVILIWE IPGVFEFLWAPFTFLLGYKDPEPSKANLPLLHEWHFRSGLDRYIWIIGMIYAYFHPNVER WMEKLEESETKVRLFIKGAIVTLSLTAGYLWYEYIYRLDKITYNKYHPYTSWIPITVYIC LRNCTQQLRSASLALFAWLGKITLETYISQIHIWLRSSTPNGQPKWLLSFVPDYPLLNFM LTTAIYLLLSYRVFEITGVLKGAFIPSRDNNRLYQNFIAGIAISACLYFCSLILVKITIV

Transcript Sequence

Transcript ID	Os05t0582100-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:28960230:28965678:-1 gene:Os05g0582100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cas1p-like family protein. (Os05t0582100-01);Similar to predicted protein. (Os05t0582100-02)
Sequence	CTTCTCCCTCCCTACCCGCGCCATGGCCTGCTGATTGCTGCTGCTGCTGCTGCTGTTGAC TCGTCTCCCGTGGATCTGGATCTTGATCCCCGCGAGAGGAATGGAGGTCTTCGGCCCCGT CACGCCCGGCCAAGTTTCGTTTTTGCTGGGTCTTTTCCCTGTCCTCATTGGATGGATCTA CGCCGAAATCTTAGAATACAGGAAATCTTTGTTGTATGGGAAAGTTCACTCGGATGCTAA TTTGGAGAATGAGACTATGAAGGAAGATGATAAGGCTGTATTACTTGAAGGAGGGCAGTC AAAATCGCCATCTACAAAGCTCCGAAACATGTCTACAAAAGCAAATTTAATACGGTTTAT AACAATGGACGAGTCTTTTCTGCTTGAAAACCGTGCTGTGCTAAGAGCAATGGCCGAAGT GGGCATTATTCTGGTCTACTTTTACATTTGTGACCGGACAAATATATTTCCAGAAACTAA GAAGAGCTACAACCGCGACCTGTTTCTGTTTCTGTACATTCTTCTTATCATAGCATCGGC ACTTACTTCACTTAAGAAGCACAATGAAAAATCAGCTTTCACTGGAAAGTCAATACTCTA TCTTAATCGTCACCAAACTGAGGAATGGAAAGGGTGGATGCAGGTCTTGTTTCTGATGTA CCACTATTTCGCTGCCACAGAAATATACAATGCAATTCGGGTGTTCATTGCTGCCTATGT CTGGATGACTGGATTCGGGAATTTCTCATATTATTATATCAAGAAAGATTTTAGCATTGC AAGATTTGCACAGATGATGTGGAGGCTAAATTTCTTTGTGGCCTTCTGTTGCATTGTCCT TGACAATGATTACATGCTGTATTATATATGTCCAATGCACACACTTTTTACTCTGATGGT ATACGGATCACTTGGTCTGTTCAACAAGTACAATGAGAAACCATCTGTCATGGCTATTAA GATTGCTTGCTGCTTCTTGACTGTCATTTTGATATGGGAAATTCCTGGGGTATTTGAATT TTTATGGGCCCCCTTTACATTTCTTCTAGGATATAAGGATCCAGAGCCTTCCAAGGCAAA CTTACCCCTGCTACATGAGTGGCATTTCCGATCTGGCCTTGATCGATACATATGGATTAT TGGAATGATCTATGCTTACTTCCACCCTAATGTTGAACGTTGGATGGAGAAGTTGGAGGA ATCTGAGACTAAGGTTAGACTGTTTATCAAGGGAGCCATTGTCACTCTTTCTTTGACGGC TGGTTACCTATGGTATGAATATATCTACAGGCTAGACAAAATTACATACAACAAGTACCA TCCCTACACGTCATGGATTCCTATCACTGTTTATATCTGCCTACGCAACTGCACCCAGCA GTTGAGGAGTGCCTCCTTGGCTCTTTTCGCCTGGCTTGGCAAGATCACACTAGAGACATA CATTTCCCAGATTCACATTTGGCTCAGGTCTAGCACGCCAAATGGGCAGCCAAAATGGCT CCTATCTTTTGTACCAGATTATCCATTGCTTAACTTCATGCTTACTACAGCAATCTATCT TCTTCTATCATACCGGGTGTTTGAGATCACAGGTGTACTGAAGGGAGCTTTTATTCCCAG TAGAGACAACAATCGGCTATATCAAAATTTTATTGCAGGGATTGCCATATCTGCATGCCT GTATTTCTGCTCACTTATTCTTGTGAAAATTACTATTGTATAGGTAGAATTGCCAAGTAA ATGACCTTGATAGAAGGTCGTTCCTGAAAATTGTGTGCTTGGTATCTGGTGGTAAGATAT TCAGCTCAGGCCTCAATTCCATTTTGCATTTGGAGGTAAAGATACAGTTCCCATGAAGGA CCTGCCGATCTTCTAGTTGGGAATTGAATTGCCAGAGGATGTAGGTATAGAAGTCAAATT TTGATTTATCATTTCCCCCATTTAAAACACTGTACACAGTTAGCGAAGTTGTGCATTCTT TGGGAGTTGTAGATGCTTTCCTAAGTTGATACAACAGTGTAAGAATTTCCTCCCCTCAAA GCACTGTAACATGTGGTGTACTATACAGAATGATACTACAAGGAAGGGTTTCCCTTTTGT AAAACGAAATATAAAGGGCAAGCCCCAATCTTTCTTT