Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0574400-01
CDS Infomation

cds chromosome:IRGSP-1.0:5:28617700:28621468:-1 gene:Os05g0574400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Malate dehydrogenase. (Os05t0574400-01)
Sequence

ATGAGGCCGTCGCTGCTGAGATACGCCGCGCAGGCGCTCCGCCGCCGCGACTACTCCTCC
GCCGCCGCGGCCGCTGAGCGGAAGGTGGCCATCCTCGGGGCGGCGGGCGGGATCGGCCAG
CCGCTCGCGCTCCTCATGAAGCTCAACCCGCTCGTCTCGTCCCTCTCCCTCTACGATATC
GCCGGAACCCCCGGCGTCGCCGCCGATGTCTCCCACATCAACTCGCCGGCGCTGGTGAAA
GGCTTCGTCGGGGAGGAGCAGCTCGGGGAGGCGTTGGAGGGTTCGGACGTCGTAATCATC
CCGGCCGGTGTGCCGAGGAAGCCCGGCATGACCAGGGACGACCTCTTCAACATCAACGCC
GGCATTGTTAAGGGCCTCTGCACTGCCATCTCCAAGTACTGCCCCAACGCTCTTGTCAAT
ATGATCAGCAACCCTGTCAACTCGACTGTCCCCATCGCAGCGGAGGTGTTCAAGAAGGCT
GGTACTTACGATGAGAAGAAACTGTTTGGTGTGACCACGCTTGATGTTGTGCGCGCTAAA
ACTTTCTATGCTGGAAAGGCTAATGTGCCAGTTACTGAAGTGAATGTCCCTGTGGTTGGT
GGCCATGCTGGTATTACTATCCTGCCACTGTTCTCGCAGGCAACCCCTGCAAGTAATGCA
TTGTCGCATGAGGACATTAAGGCTCTGACCAAGAGGACACAAGATGGTGGGACGGAAGTT
GTTGAAGCAAAGGCTGGAAAGGGTTCTGCAACATTGTCTATGGCATATGCTGGTGCGGTA
TTTGCAGATGCGTGCTTGAAGGGGCTTAATGGAGTTCCTGATGTTGTAGAGTGCTCTTTT
GTGCAATCAACAGTAACAGAGCTGCCATTCTTCGCCTCAAAGGTAAGGCTTGGCAAGAAC
GGAGTGGAGGAAGTACTTGGGCTGGGCCAGCTTTCCGAGTTTGAGAAGGAGGGTCTGGAG
AACCTGAAGGGTGAGCTCAAGTCTTCGATTGAGAAGGGCATCAAGTTTGCTCACGCGAAC
TAG

Peptide Sequence

PEP ID

Os05t0574400-01
PEP Infomation

pep chromosome:IRGSP-1.0:5:28617700:28621468:-1 gene:Os05g0574400 transcript:Os05t0574400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Malate dehydrogenase. (Os05t0574400-01)
Sequence

MRPSLLRYAAQALRRRDYSSAAAAAERKVAILGAAGGIGQPLALLMKLNPLVSSLSLYDI
AGTPGVAADVSHINSPALVKGFVGEEQLGEALEGSDVVIIPAGVPRKPGMTRDDLFNINA
GIVKGLCTAISKYCPNALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAK
TFYAGKANVPVTEVNVPVVGGHAGITILPLFSQATPASNALSHEDIKALTKRTQDGGTEV
VEAKAGKGSATLSMAYAGAVFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKN
GVEEVLGLGQLSEFEKEGLENLKGELKSSIEKGIKFAHAN

Transcript Sequence

Transcript ID

Os05t0574400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:28617700:28621468:-1 gene:Os05g0574400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Malate dehydrogenase. (Os05t0574400-01)
Sequence

CGCGACACACACACGCACACCTGAGCCGAAGCACGCACGAATCCAACGCCGAGATGAGGC
CGTCGCTGCTGAGATACGCCGCGCAGGCGCTCCGCCGCCGCGACTACTCCTCCGCCGCCG
CGGCCGCTGAGCGGAAGGTGGCCATCCTCGGGGCGGCGGGCGGGATCGGCCAGCCGCTCG
CGCTCCTCATGAAGCTCAACCCGCTCGTCTCGTCCCTCTCCCTCTACGATATCGCCGGAA
CCCCCGGCGTCGCCGCCGATGTCTCCCACATCAACTCGCCGGCGCTGGTGAAAGGCTTCG
TCGGGGAGGAGCAGCTCGGGGAGGCGTTGGAGGGTTCGGACGTCGTAATCATCCCGGCCG
GTGTGCCGAGGAAGCCCGGCATGACCAGGGACGACCTCTTCAACATCAACGCCGGCATTG
TTAAGGGCCTCTGCACTGCCATCTCCAAGTACTGCCCCAACGCTCTTGTCAATATGATCA
GCAACCCTGTCAACTCGACTGTCCCCATCGCAGCGGAGGTGTTCAAGAAGGCTGGTACTT
ACGATGAGAAGAAACTGTTTGGTGTGACCACGCTTGATGTTGTGCGCGCTAAAACTTTCT
ATGCTGGAAAGGCTAATGTGCCAGTTACTGAAGTGAATGTCCCTGTGGTTGGTGGCCATG
CTGGTATTACTATCCTGCCACTGTTCTCGCAGGCAACCCCTGCAAGTAATGCATTGTCGC
ATGAGGACATTAAGGCTCTGACCAAGAGGACACAAGATGGTGGGACGGAAGTTGTTGAAG
CAAAGGCTGGAAAGGGTTCTGCAACATTGTCTATGGCATATGCTGGTGCGGTATTTGCAG
ATGCGTGCTTGAAGGGGCTTAATGGAGTTCCTGATGTTGTAGAGTGCTCTTTTGTGCAAT
CAACAGTAACAGAGCTGCCATTCTTCGCCTCAAAGGTAAGGCTTGGCAAGAACGGAGTGG
AGGAAGTACTTGGGCTGGGCCAGCTTTCCGAGTTTGAGAAGGAGGGTCTGGAGAACCTGA
AGGGTGAGCTCAAGTCTTCGATTGAGAAGGGCATCAAGTTTGCTCACGCGAACTAGGCAA
CCTATGCAGATTCTAACAATTCAAATGTGAACTAGAGGGGGGGTCCCTCGAATTTTTGGT
TTGACTGTTGTTCTGCCCCGATCTGCTGGGGCACCGAGATGTTGTGCTCCAGAATAAAAT
CTTGCGGCTTGATGCCAACCTGAACTCAAAACTTGTACCTGAAACAGCGACTCCGGTGCT
ATTTTTCACCTTGTACCTGAAACTGCGTACAGTGAACCC