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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0568300-00
CDS Infomation

cds chromosome:IRGSP-1.0:5:28299369:28300093:-1 gene:Os05g0568300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 50S ribosomal protein L12, chloroplast precursor (CL12). (Os05t0568300-00)
Sequence

ATGGCCATGGCTTCCACCGCCGTCTCCTCCACCCTACCCCTCTTCCACGTCCGCACCGCC
TCCTCCGCTCCCGCGGCGCTCCGGTTCACCACCCGCGGCCGCGGCGGCGGCCGCCACTCC
GTCGCCTGCAACTCCACGGCGGCTTCTTCCCCCAAGGTGCTCGAGCTCGGGGACGCCATC
GCGGGGCTCACCCTGGAGGAGGCCAGGGGCCTCGTGGACCACCTCCAGGAGCGCCTCGGC
GTGTCCGCGGCCGCGTTCGCGCCCGCCGCGGTCGTCGCGGCGCCCGGCGCCGCGGGCGGC
GGCGAGGACGGCGCGCCCGCCGAGAAGACGGAGTTCGACGTGGTGATCGAGGAGGTGCCG
AGCAGCGCGCGCATCGCGACCATCAAGGTGGTGCGCGCGCTGACGAACCTGGCGCTCAAG
GAGGCCAAGGACCTCATCGAGGGTCTCCCCAAGAAGGCCAAGGAGGCCGTGAGCAAGGAG
GAGGCCGAGGAGGCCAAGAAGCAGCTCGAGGAGGTCGGCGCCAAGGTGTCAATCGCCTGA

Peptide Sequence

PEP ID

Os05t0568300-00
PEP Infomation

pep chromosome:IRGSP-1.0:5:28299369:28300093:-1 gene:Os05g0568300 transcript:Os05t0568300-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 50S ribosomal protein L12, chloroplast precursor (CL12). (Os05t0568300-00)
Sequence

MAMASTAVSSTLPLFHVRTASSAPAALRFTTRGRGGGRHSVACNSTAASSPKVLELGDAI
AGLTLEEARGLVDHLQERLGVSAAAFAPAAVVAAPGAAGGGEDGAPAEKTEFDVVIEEVP
SSARIATIKVVRALTNLALKEAKDLIEGLPKKAKEAVSKEEAEEAKKQLEEVGAKVSIA

Transcript Sequence

Transcript ID

Os05t0568300-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:28299369:28300093:-1 gene:Os05g0568300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 50S ribosomal protein L12, chloroplast precursor (CL12). (Os05t0568300-00)
Sequence

CCCCGTCGCAGAGCAGAGCGCGCCATCCAGGAACCCGCGAGCTCGCCATGGCCATGGCTT
CCACCGCCGTCTCCTCCACCCTACCCCTCTTCCACGTCCGCACCGCCTCCTCCGCTCCCG
CGGCGCTCCGGTTCACCACCCGCGGCCGCGGCGGCGGCCGCCACTCCGTCGCCTGCAACT
CCACGGCGGCTTCTTCCCCCAAGGTGCTCGAGCTCGGGGACGCCATCGCGGGGCTCACCC
TGGAGGAGGCCAGGGGCCTCGTGGACCACCTCCAGGAGCGCCTCGGCGTGTCCGCGGCCG
CGTTCGCGCCCGCCGCGGTCGTCGCGGCGCCCGGCGCCGCGGGCGGCGGCGAGGACGGCG
CGCCCGCCGAGAAGACGGAGTTCGACGTGGTGATCGAGGAGGTGCCGAGCAGCGCGCGCA
TCGCGACCATCAAGGTGGTGCGCGCGCTGACGAACCTGGCGCTCAAGGAGGCCAAGGACC
TCATCGAGGGTCTCCCCAAGAAGGCCAAGGAGGCCGTGAGCAAGGAGGAGGCCGAGGAGG
CCAAGAAGCAGCTCGAGGAGGTCGGCGCCAAGGTGTCAATCGCCTGACCTCCCTGACGAA
CACACGCACTAGGCTACTAGGACACCCAAATCTTGCTCAATTTTTTGTGTTGCATTACAC
CTCGAGACATTTTGTATCATCGTTGTTTCGCTGCAAGAATTGAATAACTGGATTTGCCAA
ATCAT