Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0566800-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:28213968:28216045:-1 gene:Os05g0566800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Cold acclimation protein 413-TM1, COR413-thylakoid membrane group multispanning transmembrane protein 1, cold-regulated 413-thylakoid membrane group multispanning transmembrane protein 1 description:Cold acclimation protein COR413-TM1. (Os05t0566800-01)
Sequence	ATGTCCATCTCGCTGCGCCTCGCGGTCCCGACGGCGGCGCCGCCCGTGCTGCCGCCGCTG CGGCAGTCTGCGGTGCGGGCGGCGGGCTCCCCCGCCGCCGCCGCTCTGCGGACGGGCGCG CTCAGGGGATGCGCCTCGCTGCCGCTGAAGCCGCAGCCGCTGCTGGGGGCGGGACAGGCG GCGAGCGGTCGCCGGGGTGGCGCCGCCGTGTGCCACTCGTCGGCGCACCTGAGCGCGCGG ACGATGCAATGGGTCTCCGCCGGGGCCACCGCAGTGCTATTGCTTGCTAAAGGCACAGCC ATACACAAATCTTTCCTTGTGCCACTGTTTGCTCTGCTAGCACCTTGCAGTGTAATCTCA TGGATCAAGAGTGACTATGGTCAGTGGACTGCTTTTCTTGCTCTTTTGGTGCGTTTGTTC TTCTCCATTCCAGGTGAGCTGGAGCTTCCATTGTCAACTATGCTGCTCGTGAGTGTTGCT CCTTACCAGTTGATGAATCTGAGGGGAACTCAAGGTGGTGCAGCACTGTCTTTGGCATTG GCTGGGTACCTCGCTTTTCAGCACTTCACCAGGGTTGGGGGTTTAGGGAAAGCATTTGAT CAGGGATCAATAATTGCAACCTTGGCCATCATCTGCATCACAGTTATCCCCTTGATGATG TTGTTCTGA

Peptide Sequence

PEP ID	Os05t0566800-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:28213968:28216045:-1 gene:Os05g0566800 transcript:Os05t0566800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Cold acclimation protein 413-TM1, COR413-thylakoid membrane group multispanning transmembrane protein 1, cold-regulated 413-thylakoid membrane group multispanning transmembrane protein 1 description:Cold acclimation protein COR413-TM1. (Os05t0566800-01)
Sequence	MSISLRLAVPTAAPPVLPPLRQSAVRAAGSPAAAALRTGALRGCASLPLKPQPLLGAGQA ASGRRGGAAVCHSSAHLSARTMQWVSAGATAVLLLAKGTAIHKSFLVPLFALLAPCSVIS WIKSDYGQWTAFLALLVRLFFSIPGELELPLSTMLLVSVAPYQLMNLRGTQGGAALSLAL AGYLAFQHFTRVGGLGKAFDQGSIIATLAIICITVIPLMMLF

Transcript Sequence

Transcript ID	Os05t0566800-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:28213968:28216045:-1 gene:Os05g0566800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Cold acclimation protein 413-TM1, COR413-thylakoid membrane group multispanning transmembrane protein 1, cold-regulated 413-thylakoid membrane group multispanning transmembrane protein 1 description:Cold acclimation protein COR413-TM1. (Os05t0566800-01)
Sequence	AGTTCGTCACTCACACGCGGAGACAAAAACACCTTCACAATTCGCGAAAGCTCAGCTGCT TCTGCTTCTTCTTCTTCTTTCGGATTCGAGAAGAGGATGTCCATCTCGCTGCGCCTCGCG GTCCCGACGGCGGCGCCGCCCGTGCTGCCGCCGCTGCGGCAGTCTGCGGTGCGGGCGGCG GGCTCCCCCGCCGCCGCCGCTCTGCGGACGGGCGCGCTCAGGGGATGCGCCTCGCTGCCG CTGAAGCCGCAGCCGCTGCTGGGGGCGGGACAGGCGGCGAGCGGTCGCCGGGGTGGCGCC GCCGTGTGCCACTCGTCGGCGCACCTGAGCGCGCGGACGATGCAATGGGTCTCCGCCGGG GCCACCGCAGTGCTATTGCTTGCTAAAGGCACAGCCATACACAAATCTTTCCTTGTGCCA CTGTTTGCTCTGCTAGCACCTTGCAGTGTAATCTCATGGATCAAGAGTGACTATGGTCAG TGGACTGCTTTTCTTGCTCTTTTGGTGCGTTTGTTCTTCTCCATTCCAGGTGAGCTGGAG CTTCCATTGTCAACTATGCTGCTCGTGAGTGTTGCTCCTTACCAGTTGATGAATCTGAGG GGAACTCAAGGTGGTGCAGCACTGTCTTTGGCATTGGCTGGGTACCTCGCTTTTCAGCAC TTCACCAGGGTTGGGGGTTTAGGGAAAGCATTTGATCAGGGATCAATAATTGCAACCTTG GCCATCATCTGCATCACAGTTATCCCCTTGATGATGTTGTTCTGAGTCAGATTAAGCTGG CAAGCCGTTGTTCATTGTGGGCATTGCAGGAGCTAGTAGGGAGTACAGAAAAATAATAGC TTTGTAATGCAACACCCTGTCAGACTTTGTGGCCTTGATAAAAGTAATAATTTATGAGAT GGCTACAGAAATGTTTACTG