Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0566500-02
CDS Infomation	cds chromosome:IRGSP-1.0:5:28202128:28204199:-1 gene:Os05g0566500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:EUKARYOTIC INITIATION FACTOR 3D description:Similar to Initiation factor 3d (Fragment). (Os05t0566500-01);Similar to Initiation factor 3d (Fragment). (Os05t0566500-02)
Sequence	ATGGGCTTCGACGTCGGCGTCGTCGCCTTCAACCCGGAGGGCTGGGGCCCTCCCGACACC GCGCCGGCGCCGGCATCCCTTGGCGGTGGCGCCGCCGCGGCCTCCATCCCCTTCGCGCCC TTCTCCCGCTCGGACAAGCTGGGACGGATCGCCGACTGGACGCGCAACCCGGCGGGCCCC GCCGCCCTCGCCGCCGCCTCCCGCGACTCCGTCTTCGACTTCACCTCCGTCGACGACTCC CTCGCCGCCGCCGCGGAGGACTCCTCGTTCCGCCTCGTCGACGCCAAGCCGCCGCCGCGC CACCCGCGGTTCGGCCCCAAGTGGCGCTTCAACCAGCGTCCGCAGCTCCCGCAGCGCCGC GACGAGGAGGTGGAGGCGCGCCGCCGCGAGGCCGAGAAGGAGCGCGCCCGCCGCGAGCGC CACTTCCAGAACAACCGCTCCCACCACCACCCCGGCTTCCGCGGCAACCAGTCCTCGTCG GCCAAGTCCTCCGTCGACATCCAGCCCGACTGGACCATGCGTGAGCAGATCCCCTTCGCC AACTTTACCAAGCTCTCCTTCTCCGTCGCCGACCAGCCCGAGGACCTCCTCTTGTGCGGC GCCGTCGAGTACTACGACCGCGCCTTCGATCGCGTCAACCCCAAGGCCGCACGCCGCCTC GAGCGCTTCAAGTCTCGCAACTTCTTCAAGGTCACCACCACCGACGACCCTGTCATCCGC CGCCTGGCTGAGGAGGACAAGGCCACGGTGTTCGCCACCGACGCCATCCTCGCCGCGCTT ATGTGCACACCCCGCAGCATCCACTCGTGGGACATCGTCGTGCAGCGCGTCGGCAACAAG CTCTTCTTTGACAAGCGTGATGGTTCCCAGCTCGATCTGCTATCTGTCAACGAGACCGCG CAGGAGCAGCTCCCAGAAAACAAGGATGATATCAACTCCGCGCACTCCCTGGCTGTCGAG GCTACCTACATCAACCAGAACTTCTCGCAGCAGGTGCTTCTTCGCGATGGTGAGAAGGTT ACCTTTGATGAGCCTAACCCGTTTGCTTCTGAGGGCGAGGAGGCAGCATCTGTTGGCTAC CGCTACCGCCGCTGGAAGCTGGATGATGAGATCAGCATTGTTGCTCGCTGTGAAGTGCAT GCTGTGAATGCTGATCCAGGTGGTGGTCGTCAGTTCCTTACTCTCAATGCGCTCAATGAG TTTGATCCTAAGATTACTGGTGTTGACTGGAGGCAGAAGCTTGAGACACAGCGTGGGGCT GTGCTCGCTACAGAGCTCAAGAACAATGCCAACAAACTTGCTCGCTGGACTTGCCAGGCT TTGCTTGCTGGTGCTGACATGATGAAGTTGGGATATGTGTCACGTGTGCACCCCCGTGAT CACTACAACCATGCCATACTCACTGTTATGGGATACAAGCCAAGGGATTTTGCTACACAG ATCAACCTCAACACATCAAACATGTGGGGAATTGTCAAGTCGATCGTGGACATCTGCATG AAGTTTGAGGAGGGAAAGTATGTGCTTGTAAAAGATCCAGCGAAGCCACAAGTGAGGATC TATGAGGTGCCTTCTGATGCATTTGAGAATGACTATGTGGAAGAGCCACTTCCGGAGGAG GAACAGGTTCGGCCGCCATCAGATGATGTTGATGCTACCGCGGAGGAAATGGATGCAGCG GCAGAGGCTGAGGCGAACAATGCAGCAGCTTCTGCAGGTGGTGAGGGCGAGAAGAGCGCA GAAGCTGCTGCCGCTTGA

Peptide Sequence

PEP ID	Os05t0566500-02
PEP Infomation	pep chromosome:IRGSP-1.0:5:28202128:28204199:-1 gene:Os05g0566500 transcript:Os05t0566500-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:EUKARYOTIC INITIATION FACTOR 3D description:Similar to Initiation factor 3d (Fragment). (Os05t0566500-01);Similar to Initiation factor 3d (Fragment). (Os05t0566500-02)
Sequence	MGFDVGVVAFNPEGWGPPDTAPAPASLGGGAAAASIPFAPFSRSDKLGRIADWTRNPAGP AALAAASRDSVFDFTSVDDSLAAAAEDSSFRLVDAKPPPRHPRFGPKWRFNQRPQLPQRR DEEVEARRREAEKERARRERHFQNNRSHHHPGFRGNQSSSAKSSVDIQPDWTMREQIPFA NFTKLSFSVADQPEDLLLCGAVEYYDRAFDRVNPKAARRLERFKSRNFFKVTTTDDPVIR RLAEEDKATVFATDAILAALMCTPRSIHSWDIVVQRVGNKLFFDKRDGSQLDLLSVNETA QEQLPENKDDINSAHSLAVEATYINQNFSQQVLLRDGEKVTFDEPNPFASEGEEAASVGY RYRRWKLDDEISIVARCEVHAVNADPGGGRQFLTLNALNEFDPKITGVDWRQKLETQRGA VLATELKNNANKLARWTCQALLAGADMMKLGYVSRVHPRDHYNHAILTVMGYKPRDFATQ INLNTSNMWGIVKSIVDICMKFEEGKYVLVKDPAKPQVRIYEVPSDAFENDYVEEPLPEE EQVRPPSDDVDATAEEMDAAAEAEANNAAASAGGEGEKSAEAAAA

Transcript Sequence

Transcript ID	Os05t0566500-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:28202128:28204199:-1 gene:Os05g0566500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:EUKARYOTIC INITIATION FACTOR 3D description:Similar to Initiation factor 3d (Fragment). (Os05t0566500-01);Similar to Initiation factor 3d (Fragment). (Os05t0566500-02)
Sequence	CTCTCCCTCCCCACCCAAACCCTCGCGCCGCCACCCCCAGCCTCCGCCCGGATCCAGACC GCCTCCGCCGCCGAGCACCATGGGCTTCGACGTCGGCGTCGTCGCCTTCAACCCGGAGGG CTGGGGCCCTCCCGACACCGCGCCGGCGCCGGCATCCCTTGGCGGTGGCGCCGCCGCGGC CTCCATCCCCTTCGCGCCCTTCTCCCGCTCGGACAAGCTGGGACGGATCGCCGACTGGAC GCGCAACCCGGCGGGCCCCGCCGCCCTCGCCGCCGCCTCCCGCGACTCCGTCTTCGACTT CACCTCCGTCGACGACTCCCTCGCCGCCGCCGCGGAGGACTCCTCGTTCCGCCTCGTCGA CGCCAAGCCGCCGCCGCGCCACCCGCGGTTCGGCCCCAAGTGGCGCTTCAACCAGCGTCC GCAGCTCCCGCAGCGCCGCGACGAGGAGGTGGAGGCGCGCCGCCGCGAGGCCGAGAAGGA GCGCGCCCGCCGCGAGCGCCACTTCCAGAACAACCGCTCCCACCACCACCCCGGCTTCCG CGGCAACCAGTCCTCGTCGGCCAAGTCCTCCGTCGACATCCAGCCCGACTGGACCATGCG TGAGCAGATCCCCTTCGCCAACTTTACCAAGCTCTCCTTCTCCGTCGCCGACCAGCCCGA GGACCTCCTCTTGTGCGGCGCCGTCGAGTACTACGACCGCGCCTTCGATCGCGTCAACCC CAAGGCCGCACGCCGCCTCGAGCGCTTCAAGTCTCGCAACTTCTTCAAGGTCACCACCAC CGACGACCCTGTCATCCGCCGCCTGGCTGAGGAGGACAAGGCCACGGTGTTCGCCACCGA CGCCATCCTCGCCGCGCTTATGTGCACACCCCGCAGCATCCACTCGTGGGACATCGTCGT GCAGCGCGTCGGCAACAAGCTCTTCTTTGACAAGCGTGATGGTTCCCAGCTCGATCTGCT ATCTGTCAACGAGACCGCGCAGGAGCAGCTCCCAGAAAACAAGGATGATATCAACTCCGC GCACTCCCTGGCTGTCGAGGCTACCTACATCAACCAGAACTTCTCGCAGCAGGTGCTTCT TCGCGATGGTGAGAAGGTTACCTTTGATGAGCCTAACCCGTTTGCTTCTGAGGGCGAGGA GGCAGCATCTGTTGGCTACCGCTACCGCCGCTGGAAGCTGGATGATGAGATCAGCATTGT TGCTCGCTGTGAAGTGCATGCTGTGAATGCTGATCCAGGTGGTGGTCGTCAGTTCCTTAC TCTCAATGCGCTCAATGAGTTTGATCCTAAGATTACTGGTGTTGACTGGAGGCAGAAGCT TGAGACACAGCGTGGGGCTGTGCTCGCTACAGAGCTCAAGAACAATGCCAACAAACTTGC TCGCTGGACTTGCCAGGCTTTGCTTGCTGGTGCTGACATGATGAAGTTGGGATATGTGTC ACGTGTGCACCCCCGTGATCACTACAACCATGCCATACTCACTGTTATGGGATACAAGCC AAGGGATTTTGCTACACAGATCAACCTCAACACATCAAACATGTGGGGAATTGTCAAGTC GATCGTGGACATCTGCATGAAGTTTGAGGAGGGAAAGTATGTGCTTGTAAAAGATCCAGC GAAGCCACAAGTGAGGATCTATGAGGTGCCTTCTGATGCATTTGAGAATGACTATGTGGA AGAGCCACTTCCGGAGGAGGAACAGGTTCGGCCGCCATCAGATGATGTTGATGCTACCGC GGAGGAAATGGATGCAGCGGCAGAGGCTGAGGCGAACAATGCAGCAGCTTCTGCAGGTGG TGAGGGCGAGAAGAGCGCAGAAGCTGCTGCCGCTTGAAGGGCTCCTCTTCAGGTTGCCAG CTAGATCCTTTTTGGTTTAATTATCTGTTTTTATGGTTTACATTTAAGAGTTGAACTGCC TGTTATCGATACAGTGGTCTTGTTTGGTCGATGATAAAACTGTTCTGTTTTTCATCTTAA AGATGCTAAGTTGCCCGCTCAATGACTATGTTGGTACTCCTAGTTTGATATCACTTCTGG CTGTTTATTGACCATGTTACTATGTTTAAACC