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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0558800-03
CDS Infomation

cds chromosome:IRGSP-1.0:5:27794664:27796994:1 gene:Os05g0558800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:adaptor protein NINJA 1, adaptor protein NINJA 2, NOVEL INTERACTOR OF JAZ 1, NOVEL INTERACTOR OF JAZ 2 description:Protein of unknown function DUF1675 family protein. (Os05t0558800-01);Protein of unknown function DUF1675 family protein. (Os05t0558800-02);Similar to UPF0737 protein 8. (Os05t0558800-03)
Sequence

ATGGACGATGAGAATGGCCTTGAGCTTAGCTTGGGTCTCTCTTTGGGTGGGACATCAGGA
AAGTCTAAGGCTAGAGATGCTCCTCTAGAACCTAAAGCAGAGCCTCAAGTGGAAGAGAGC
AGTAGCAAAGGTGTTTCACAAACTCCTGAGGCTCCTTTTGTGCATTACTATCAAACAAAT
GCAGAGAACCAAGAACACAGTAGCAAGCAGAGACACAGCCCTGCTGCACCACCGTTTGGG
AACTTTTGGGGACAGCCAGGGAGTTCTTCTGTTCCTGTGGCAGATGGATCCAATGAACAG
AAGCCAGTCTCTAGTAAACGGAAATTACTTTCTGAGGAGATAAGTTTTCAGAAGAAACCT
AATACAGCTGCTGAGCAACCTGATGCATTTAGTAAGAGCTCTGACGGTGGTGTAAAAAAC
GCTCCTATTTCAATTAGCACGGATGATGGTTCAACAGGTGAAAACGAGGATGTTGCAGAA
TCAGAAGCAGAAGGCTCAAACTCTTGGTTGGTTGCACAGCGTGAAGACAGTGCTAAGGGA
TCTGTTGTCAATAGAGGATCTGACAGAAAACGATCCAGTGATGATGCTGCAGTTGGTTTT
CAAGGAAAGAGGCAGCCAAGTTTCTCAGGAAGTGAATCCAGCTCTGGAAAATTGCCACAA
GGAAATCCTTTGTCATTGCAAGCATCAAATGTTGTTGCTGTGCCATATCAAGTCCCGTCT
CAGGTTTCAGCTCCTCCCAGTATTACC

Peptide Sequence

PEP ID

Os05t0558800-03
PEP Infomation

pep chromosome:IRGSP-1.0:5:27794664:27796994:1 gene:Os05g0558800 transcript:Os05t0558800-03 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:adaptor protein NINJA 1, adaptor protein NINJA 2, NOVEL INTERACTOR OF JAZ 1, NOVEL INTERACTOR OF JAZ 2 description:Protein of unknown function DUF1675 family protein. (Os05t0558800-01);Protein of unknown function DUF1675 family protein. (Os05t0558800-02);Similar to UPF0737 protein 8. (Os05t0558800-03)
Sequence

MDDENGLELSLGLSLGGTSGKSKARDAPLEPKAEPQVEESSSKGVSQTPEAPFVHYYQTN
AENQEHSSKQRHSPAAPPFGNFWGQPGSSSVPVADGSNEQKPVSSKRKLLSEEISFQKKP
NTAAEQPDAFSKSSDGGVKNAPISISTDDGSTGENEDVAESEAEGSNSWLVAQREDSAKG
SVVNRGSDRKRSSDDAAVGFQGKRQPSFSGSESSSGKLPQGNPLSLQASNVVAVPYQVPS
QVSAPPSIT

Transcript Sequence

Transcript ID

Os05t0558800-03
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:27794664:27796994:1 gene:Os05g0558800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:adaptor protein NINJA 1, adaptor protein NINJA 2, NOVEL INTERACTOR OF JAZ 1, NOVEL INTERACTOR OF JAZ 2 description:Protein of unknown function DUF1675 family protein. (Os05t0558800-01);Protein of unknown function DUF1675 family protein. (Os05t0558800-02);Similar to UPF0737 protein 8. (Os05t0558800-03)
Sequence

ATTCCAACCCGCGACTGCGAGCGAGGCGAGTAGGGCGGCTTCGTCGTTCGTCCTGCTGCT
TCCGCCGCATCCATCCTGATATGACTTGTTGAGTGGAAAGAATCAATATAGTACAATCTA
TTTTCTTCTCAATGTGTAGAAGAAACAGTCTGTAACCATACATACTTATTAATACGACTA
GTGAAATCTAGACATGGACGATGAGAATGGCCTTGAGCTTAGCTTGGGTCTCTCTTTGGG
TGGGACATCAGGAAAGTCTAAGGCTAGAGATGCTCCTCTAGAACCTAAAGCAGAGCCTCA
AGTGGAAGAGAGCAGTAGCAAAGGTGTTTCACAAACTCCTGAGGCTCCTTTTGTGCATTA
CTATCAAACAAATGCAGAGAACCAAGAACACAGTAGCAAGCAGAGACACAGCCCTGCTGC
ACCACCGTTTGGGAACTTTTGGGGACAGCCAGGGAGTTCTTCTGTTCCTGTGGCAGATGG
ATCCAATGAACAGAAGCCAGTCTCTAGTAAACGGAAATTACTTTCTGAGGAGATAAGTTT
TCAGAAGAAACCTAATACAGCTGCTGAGCAACCTGATGCATTTAGTAAGAGCTCTGACGG
TGGTGTAAAAAACGCTCCTATTTCAATTAGCACGGATGATGGTTCAACAGGTGAAAACGA
GGATGTTGCAGAATCAGAAGCAGAAGGCTCAAACTCTTGGTTGGTTGCACAGCGTGAAGA
CAGTGCTAAGGGATCTGTTGTCAATAGAGGATCTGACAGAAAACGATCCAGTGATGATGC
TGCAGTTGGTTTTCAAGGAAAGAGGCAGCCAAGTTTCTCAGGAAGTGAATCCAGCTCTGG
AAAATTGCCACAAGGAAATCCTTTGTCATTGCAAGCATCAAATGTTGTTGCTGTGCCATA
TCAAGTCCCGTCTCAGGTTTCAGCTCCTCCCAGTATTACC