Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0557200-02
CDS Infomation	cds chromosome:IRGSP-1.0:5:27712430:27717699:1 gene:Os05g0557200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Armadillo-type fold domain containing protein. (Os05t0557200-01);Armadillo-type fold domain containing protein. (Os05t0557200-02)
Sequence	ATGGAGGCGCCGGCGATGGAGCCCGGCGAGATGGAAGCGATGCTCCGGGCGGCAGCGGAG TTCGCGTCCTACCCAGGAGCGCATGGTGATGACACCGTGAGGCAGTTCCTGGAGCAATAC CCTCTGCCCAAGCTGTTAGGTGCATTGCAGAGTGAGGCTGATGTACCTGGGATGGATGAA ACTATTGCCGCATGCTTGGACAAAGTATTTTCTTCGAGATATGGAGCATCATTTCTGCCA AGCTATGGTGCATTTATTCAAGCTGGATTGCTTGCAAACTCGAAGAATACCAGACAACTA GCCTGCAAAGCTGTGATACATCTTCTTGATAAGGCTGGAGATAGTGCTGTTGTTGTGGAC ACATTTGTTCAGCACAATCTATATCCTCTTCTGATGAATTGTTTAACTGAGGGAGATGAG GAGATTTCAGCAATTTCTCTGGATGGCATAAAACGTTTAGCACAAATTCCTAAAGGCATT GAGATCATATTTCCACCAAATGGTCAAGGGTCTGTGCAACTCCACAAAGTGGCAGCTCAG TCATCGTCCATGGCACGAATTCGCATTCTATCACTGATAGCTAAGCTCTTTGCTGTGTCA ACCTATACTGCTACTGCCATTTACGACTCAAATCTTCTCAGCTTATTTGAGGATGAGATA AAAGATAGAAGAGACATGCTTAAAACCCTGAGTGCACTAGAGGTCCTCTATGAGCTCGTG GAACACCCTCACAGCAATATCTTCTTGCTGAAGACTAATTTACTTCAACTCATGGTTGAT GTGATCAACGATTCATCGGCTGATTCTATTGTACGGTCAAGGGCAACATTGATTAGTGGG AGGCTTCTTTCTTCAGCTGATGCTTTCACGACAATAGATCGAAACTGTGTTGCAAATCTG CTTCTAGCTATAGACAAATTATTGAAGATGGAAGAAAGTCAAAATACAGATGAAACTGAG AGTGCATTGGAGGCCTTAGGCCTGATTGGTACAACATCTGCTGGAGCATGTTTGTTGCTC ACAGATTCATCAAATGCTGCCAGACATGTGGTAGAGGCATCCTTTGGTCGGCAGGGTAGA GGTAAACAGCTGGCTGCTTTGCATGCATTTGGAAGCATATCTGGTGTTGATCGGCAGGAA GACCAAATAAAACTGGATAATCAAGCGGAAGAACGCCTGAAGCGTTTTGTCTATACCACA GCAAGAAACAGTCCAAAACTGACACCTTCGGCTCTTCTTCTGTCGGTGTTACAACAAGAT CCAGACATAAGGATAACTGGTTACAGAGTAATATCTGGCCTTGTTGCCAGAGAATGGTGC CTAATGGAAATTTGTTCAAAGTTGGACATAATCAACCTTGTTACAGATCCCAAAATGGAG ATGACAAAACTTGGCATGGAAGCACGGCATGATTGTTGTCTGGCGATCAGCAAGGCATTA TCATCATCACATCTTCTTCATGAACCAAGCCTTTCTGAACTCATTGGAAAGTTGAATGAA GCGGTTAAAAGGGGTCCTTATCTTTCTGAGAGGAAGCGTGTGGAGCCACAGCCGGTGGTT GTCCCGGCAGAGAGGTTTTAA

Peptide Sequence

PEP ID	Os05t0557200-02
PEP Infomation	pep chromosome:IRGSP-1.0:5:27712430:27717699:1 gene:Os05g0557200 transcript:Os05t0557200-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Armadillo-type fold domain containing protein. (Os05t0557200-01);Armadillo-type fold domain containing protein. (Os05t0557200-02)
Sequence	MEAPAMEPGEMEAMLRAAAEFASYPGAHGDDTVRQFLEQYPLPKLLGALQSEADVPGMDE TIAACLDKVFSSRYGASFLPSYGAFIQAGLLANSKNTRQLACKAVIHLLDKAGDSAVVVD TFVQHNLYPLLMNCLTEGDEEISAISLDGIKRLAQIPKGIEIIFPPNGQGSVQLHKVAAQ SSSMARIRILSLIAKLFAVSTYTATAIYDSNLLSLFEDEIKDRRDMLKTLSALEVLYELV EHPHSNIFLLKTNLLQLMVDVINDSSADSIVRSRATLISGRLLSSADAFTTIDRNCVANL LLAIDKLLKMEESQNTDETESALEALGLIGTTSAGACLLLTDSSNAARHVVEASFGRQGR GKQLAALHAFGSISGVDRQEDQIKLDNQAEERLKRFVYTTARNSPKLTPSALLLSVLQQD PDIRITGYRVISGLVAREWCLMEICSKLDIINLVTDPKMEMTKLGMEARHDCCLAISKAL SSSHLLHEPSLSELIGKLNEAVKRGPYLSERKRVEPQPVVVPAERF

Transcript Sequence

Transcript ID	Os05t0557200-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:27712430:27717699:1 gene:Os05g0557200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Armadillo-type fold domain containing protein. (Os05t0557200-01);Armadillo-type fold domain containing protein. (Os05t0557200-02)
Sequence	CTGCCTTTGCCTTGCCAGTCAGTGCTCGAGTTCGTCTCGCTCTCCGCATCCGCAACTAGG GTTTCCCCCCAAGCAAGTCGCAGATGGAGGCGCCGGCGATGGAGCCCGGCGAGATGGAAG CGATGCTCCGGGCGGCAGCGGAGTTCGCGTCCTACCCAGGAGCGCATGGTGATGACACCG TGAGGCAGTTCCTGGAGCAATACCCTCTGCCCAAGCTGTTAGGTGCATTGCAGAGTGAGG CTGATGTACCTGGGATGGATGAAACTATTGCCGCATGCTTGGACAAAGTATTTTCTTCGA GATATGGAGCATCATTTCTGCCAAGCTATGGTGCATTTATTCAAGCTGGATTGCTTGCAA ACTCGAAGAATACCAGACAACTAGCCTGCAAAGCTGTGATACATCTTCTTGATAAGGCTG GAGATAGTGCTGTTGTTGTGGACACATTTGTTCAGCACAATCTATATCCTCTTCTGATGA ATTGTTTAACTGAGGGAGATGAGGAGATTTCAGCAATTTCTCTGGATGGCATAAAACGTT TAGCACAAATTCCTAAAGGCATTGAGATCATATTTCCACCAAATGGTCAAGGGTCTGTGC AACTCCACAAAGTGGCAGCTCAGTCATCGTCCATGGCACGAATTCGCATTCTATCACTGA TAGCTAAGCTCTTTGCTGTGTCAACCTATACTGCTACTGCCATTTACGACTCAAATCTTC TCAGCTTATTTGAGGATGAGATAAAAGATAGAAGAGACATGCTTAAAACCCTGAGTGCAC TAGAGGTCCTCTATGAGCTCGTGGAACACCCTCACAGCAATATCTTCTTGCTGAAGACTA ATTTACTTCAACTCATGGTTGATGTGATCAACGATTCATCGGCTGATTCTATTGTACGGT CAAGGGCAACATTGATTAGTGGGAGGCTTCTTTCTTCAGCTGATGCTTTCACGACAATAG ATCGAAACTGTGTTGCAAATCTGCTTCTAGCTATAGACAAATTATTGAAGATGGAAGAAA GTCAAAATACAGATGAAACTGAGAGTGCATTGGAGGCCTTAGGCCTGATTGGTACAACAT CTGCTGGAGCATGTTTGTTGCTCACAGATTCATCAAATGCTGCCAGACATGTGGTAGAGG CATCCTTTGGTCGGCAGGGTAGAGGTAAACAGCTGGCTGCTTTGCATGCATTTGGAAGCA TATCTGGTGTTGATCGGCAGGAAGACCAAATAAAACTGGATAATCAAGCGGAAGAACGCC TGAAGCGTTTTGTCTATACCACAGCAAGAAACAGTCCAAAACTGACACCTTCGGCTCTTC TTCTGTCGGTGTTACAACAAGATCCAGACATAAGGATAACTGGTTACAGAGTAATATCTG GCCTTGTTGCCAGAGAATGGTGCCTAATGGAAATTTGTTCAAAGTTGGACATAATCAACC TTGTTACAGATCCCAAAATGGAGATGACAAAACTTGGCATGGAAGCACGGCATGATTGTT GTCTGGCGATCAGCAAGGCATTATCATCATCACATCTTCTTCATGAACCAAGCCTTTCTG AACTCATTGGAAAGTTGAATGAAGCGGTTAAAAGGGGTCCTTATCTTTCTGAGAGGAAGC GTGTGGAGCCACAGCCGGTGGTTGTCCCGGCAGAGAGGTTTTAACTCTTTACCTGAAGCA CAGGCCGTCTAACCTTTGCAACCCAGAGAAAACTGAGGATGCCTATGCAGCTGGCTTTTT GTATATGGTTAACCAAAAATAGAGATGATGGATGTACCACCTGTGTTCCTGGTGCGCTAA ACATGTCTTTGACGACCGAAGATACTGTTATTTCAGCTAAGTAATATAACTCAGTGGATG CTGTTGGGAACG