Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0554500-02
CDS Infomation

cds chromosome:IRGSP-1.0:5:27560718:27562914:1 gene:Os05g0554500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os05t0554500-01);Conserved hypothetical protein. (Os05t0554500-02)
Sequence

ATGCCGAGGAGAGGTGGAGCGGCGAAGAAGCCGGCGGGCGGCGGCGAGCTGTCCCGCTTC
CTGCAGTCGCACCTCCAGACCATCAACGACACCTTCCAGATGATGGCGGAGGCGGCTCCC
GGCGGCTTGGAGCGGACGGAGTGGTCTGAGGTCGTCAAGCTCGGCGAGCAAGTCTCCAGG
CAGGCCACTGTTGCTGGAATGGTCTGGAGTGGTGATTTGCCTGATGTAGAAACACTCAAG
GAGAACATCGTCGCATATTTCAACATCCTGCAGGGTTTCCTTTTGGGTTGCCACGGCAGC
ACAGTTGGCGCAGGACCCACACTTCACAAATCCATCTGTAGCTCTGCAAAGAATGTTGTT
GACTCCAGCTTCTCATTGTTCAATCAAGCTGTTTCTGCTTATGAATCACGCAGTCCTGAC
CGGAAAACAACTATACCTCAGGTGACAGGAACTGTATGGGAAGCATGTCTTGCTCTCAAC
AAGGTACCAACAACCAACTGTGTTGCCATAGGACGAGCCATGACTCAGATAGGTGTGTAT
CTGAAGGATATTCTCCGAGAGATGAAAGAACTACCAATTGGTGATTCTAATGGCACTGCT
GAAAAATCTTCTAATGGAGCTGTGGACACCACAAGTTGTTCTGATAGAGATGGATCGTCA
AGTGACCTTGAGTTAGATGAGGACTTCACTGAAGAGGAGGTTGCTGTTGCCAAATTGGTT
GTCACTGTGGCTTCCGATGCGCTTGTTGTGGTGAAAGAAACAATTCGTTTCATTACTTGT
TTGCTTAAGATCTCAGGTAACCGAAGTGGAGCTAATGAGGAAAAAGTTGAGACAATGGAA
CAATTGTTGAGCTGTTGCAGACAGGCTGCTGACCAGATTAACGACCTCGGGGCGTCTGTG
TACCCACCACAAGACTTATCTGAGATGAAATCCTCAGTGAAAAGATTGTATGGTGGCGCC
AATGCAATGCGGAGGGAAATCAGGAGCCTTGGTGGCTCACCTGAGGGTGCCTTTGTAGCC
CTTGAAAGATTTGAGAAGTCCCTGGGAGCTCTAGAAGTGGAGATAGCTGATGATGTAGCA
AACGAGATGGAAAATCTTACCATTAGCTCGTCCTGA

Peptide Sequence

PEP ID

Os05t0554500-02
PEP Infomation

pep chromosome:IRGSP-1.0:5:27560718:27562914:1 gene:Os05g0554500 transcript:Os05t0554500-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os05t0554500-01);Conserved hypothetical protein. (Os05t0554500-02)
Sequence

MPRRGGAAKKPAGGGELSRFLQSHLQTINDTFQMMAEAAPGGLERTEWSEVVKLGEQVSR
QATVAGMVWSGDLPDVETLKENIVAYFNILQGFLLGCHGSTVGAGPTLHKSICSSAKNVV
DSSFSLFNQAVSAYESRSPDRKTTIPQVTGTVWEACLALNKVPTTNCVAIGRAMTQIGVY
LKDILREMKELPIGDSNGTAEKSSNGAVDTTSCSDRDGSSSDLELDEDFTEEEVAVAKLV
VTVASDALVVVKETIRFITCLLKISGNRSGANEEKVETMEQLLSCCRQAADQINDLGASV
YPPQDLSEMKSSVKRLYGGANAMRREIRSLGGSPEGAFVALERFEKSLGALEVEIADDVA
NEMENLTISSS

Transcript Sequence

Transcript ID

Os05t0554500-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:27560718:27562914:1 gene:Os05g0554500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os05t0554500-01);Conserved hypothetical protein. (Os05t0554500-02)
Sequence

CTTCCGCCCCCGCCGCCGCCGCCGCCGCCTCGCCGCGGCTCGCATCCCTCTTCCTCTCCC
TCTCTTCTTCGCCGGCGCGACGCGACGAGGCGGTAGCTGCCTGCCATGCCGAGGAGAGGT
GGAGCGGCGAAGAAGCCGGCGGGCGGCGGCGAGCTGTCCCGCTTCCTGCAGTCGCACCTC
CAGACCATCAACGACACCTTCCAGATGATGGCGGAGGCGGCTCCCGGCGGCTTGGAGCGG
ACGGAGTGGTCTGAGGTCGTCAAGCTCGGCGAGCAAGTCTCCAGGCAGGCCACTGTTGCT
GGAATGGTCTGGAGTGGTGATTTGCCTGATGTAGAAACACTCAAGGAGAACATCGTCGCA
TATTTCAACATCCTGCAGGGTTTCCTTTTGGGTTGCCACGGCAGCACAGTTGGCGCAGGA
CCCACACTTCACAAATCCATCTGTAGCTCTGCAAAGAATGTTGTTGACTCCAGCTTCTCA
TTGTTCAATCAAGCTGTTTCTGCTTATGAATCACGCAGTCCTGACCGGAAAACAACTATA
CCTCAGGTGACAGGAACTGTATGGGAAGCATGTCTTGCTCTCAACAAGGTACCAACAACC
AACTGTGTTGCCATAGGACGAGCCATGACTCAGATAGGTGTGTATCTGAAGGATATTCTC
CGAGAGATGAAAGAACTACCAATTGGTGATTCTAATGGCACTGCTGAAAAATCTTCTAAT
GGAGCTGTGGACACCACAAGTTGTTCTGATAGAGATGGATCGTCAAGTGACCTTGAGTTA
GATGAGGACTTCACTGAAGAGGAGGTTGCTGTTGCCAAATTGGTTGTCACTGTGGCTTCC
GATGCGCTTGTTGTGGTGAAAGAAACAATTCGTTTCATTACTTGTTTGCTTAAGATCTCA
GGTAACCGAAGTGGAGCTAATGAGGAAAAAGTTGAGACAATGGAACAATTGTTGAGCTGT
TGCAGACAGGCTGCTGACCAGATTAACGACCTCGGGGCGTCTGTGTACCCACCACAAGAC
TTATCTGAGATGAAATCCTCAGTGAAAAGATTGTATGGTGGCGCCAATGCAATGCGGAGG
GAAATCAGGAGCCTTGGTGGCTCACCTGAGGGTGCCTTTGTAGCCCTTGAAAGATTTGAG
AAGTCCCTGGGAGCTCTAGAAGTGGAGATAGCTGATGATGTAGCAAACGAGATGGAAAAT
CTTACCATTAGCTCGTCCTGATTGCTGGAACTTGAAAGATTTGCCATACCTATATGATAA
TATGTCCTCTTGTTCGAGCTATAAGCTTTTGTTGTTCAACTAAAACGATGAATATGTATA
ATCCTTTCCAGTGTGAGATCAAATGCTTATTGCTTAGCCTGCTTTGCTGTTC