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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0552400-01
CDS Infomation

cds chromosome:IRGSP-1.0:5:27463260:27465297:1 gene:Os05g0552400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os05t0552400-01)
Sequence

ATGGCGGACCACTTTGCAGTAATGGCCGGCCGGTTGCTAACGGAATCGACTGTTCAGTCT
GCCATTGATGAGGCCTCTGCTGCTGCCATGCCTTCTTCAGTGATTGCTTCTGAACATAAT
GATGTTCAAGATGAGAGGGAGAAGAGTGGTGTTCTTGTAGAATGTAGAATTTGCCAGGAA
GAGGATGATCAGACCTACATGGAGACCCCTTGCTCCTGCAGGGGCAGCTTGAAGTATGCT
CATCGCAAATGCATTCAGAGGTGGTGTGATGAGAAGGGAGACACCATATGTGAGATATGC
TTACAGCAATACACACCAAACTACACAGCACCTGCAAAGTTGTTTCAACATGGAAGAAAC
TCAATTTTCTTCAGAACTCCTGGTTACATTCAAGCACAGGTCATGCAAAACACAGACCGA
AGTGCTGCTGCCTCAACAAGCTACGATCCTGAACTCCCCAACCCAAAAGGTGTAATCTAT
TGTCGCATAGTTGCTCTAACTCTGATGGTACTCTTGCTACTCCACGACGCAATCTCGGTT
TTCCTCGGTGATCACGATGCTTACACCGTCGCAATGATCACTCTGCTGATGCTTAGAACG
GCTGGAATCGTTATACCTGTGTACATCATCTTGCTGTCCTTAACTGAACTGCTTCATCGA
CGCAACCAGCGGCAGATTTCAGACGCTGCTGCTGCGGTGAACATCAACCAGCAGGCGCCA
CAGTCACCGCGGCGACAGCATGTCATCAGCATCCAATAA

Peptide Sequence

PEP ID

Os05t0552400-01
PEP Infomation

pep chromosome:IRGSP-1.0:5:27463260:27465297:1 gene:Os05g0552400 transcript:Os05t0552400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os05t0552400-01)
Sequence

MADHFAVMAGRLLTESTVQSAIDEASAAAMPSSVIASEHNDVQDEREKSGVLVECRICQE
EDDQTYMETPCSCRGSLKYAHRKCIQRWCDEKGDTICEICLQQYTPNYTAPAKLFQHGRN
SIFFRTPGYIQAQVMQNTDRSAAASTSYDPELPNPKGVIYCRIVALTLMVLLLLHDAISV
FLGDHDAYTVAMITLLMLRTAGIVIPVYIILLSLTELLHRRNQRQISDAAAAVNINQQAP
QSPRRQHVISIQ

Transcript Sequence

Transcript ID

Os05t0552400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:27463260:27465297:1 gene:Os05g0552400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os05t0552400-01)
Sequence

ACCTCCTCGAATTGTCGAGGAAGCTCATGCCTTGATTTTTCTCTGTTTTGAACTGCAATT
GCAGGGATGGCGGACCACTTTGCAGTAATGGCCGGCCGGTTGCTAACGGAATCGACTGTT
CAGTCTGCCATTGATGAGGCCTCTGCTGCTGCCATGCCTTCTTCAGTGATTGCTTCTGAA
CATAATGATGTTCAAGATGAGAGGGAGAAGAGTGGTGTTCTTGTAGAATGTAGAATTTGC
CAGGAAGAGGATGATCAGACCTACATGGAGACCCCTTGCTCCTGCAGGGGCAGCTTGAAG
TATGCTCATCGCAAATGCATTCAGAGGTGGTGTGATGAGAAGGGAGACACCATATGTGAG
ATATGCTTACAGCAATACACACCAAACTACACAGCACCTGCAAAGTTGTTTCAACATGGA
AGAAACTCAATTTTCTTCAGAACTCCTGGTTACATTCAAGCACAGGTCATGCAAAACACA
GACCGAAGTGCTGCTGCCTCAACAAGCTACGATCCTGAACTCCCCAACCCAAAAGGTGTA
ATCTATTGTCGCATAGTTGCTCTAACTCTGATGGTACTCTTGCTACTCCACGACGCAATC
TCGGTTTTCCTCGGTGATCACGATGCTTACACCGTCGCAATGATCACTCTGCTGATGCTT
AGAACGGCTGGAATCGTTATACCTGTGTACATCATCTTGCTGTCCTTAACTGAACTGCTT
CATCGACGCAACCAGCGGCAGATTTCAGACGCTGCTGCTGCGGTGAACATCAACCAGCAG
GCGCCACAGTCACCGCGGCGACAGCATGTCATCAGCATCCAATAAGTTCAGAGATGGAAC
ATGTGTACGTGTATATACAAAGGCATGTCACTTGGATGAGGTTTTGGGCTCAAGATGTGC
GATCAAGATACGAAGATATGCAAGACATTGGTGTGATGTGTGAGTAGTTGCTCTTTGTAA
ATATTGTGAAAAAAAAAGTGCATGCGTAAGCGGCCACTCGCTTCTTAAGTAAATCAAGAT
GAAGTGAGATTACTGTACATAAGAAGAATACAGACAATACACGATGAAAATGGGTACAGC
TGATGTACCTGCTTAAGTTGAAAGTAACATGAGATTTTTTTTTGAGGGT