Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0551900-00
CDS Infomation

cds chromosome:IRGSP-1.0:5:27441786:27445901:-1 gene:Os05g0551900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to EMB1865 (embryo defective 1865); RNA binding. (Os05t0551900-00)
Sequence

ATGGCGCTCTCCGAGCTCCCGCTCCACCACTCCTTCCGCCTCTCCTCCCGCCCCCACCTC
CGCCTCCTCCCGCTCCGCCTTCTCTCCTCCCGCCACGCCTCCTCCTCCTCCTCCACCACC
GCCGCCGCGTCCTCCTCCTCCTCCTCCGGCGGCAACCGCGCCCCTCCGGCTCCAAATCCA
ACCCGAGGCGCGCCGTGGCTGCAGAAGTGGGGGCCCACCGACCCCGCCGCGCCGCCGCCA
CCACCTCCGGCTCCCTCCCCGACCTCCTCCATCGACCGAATCGTCCACCGCCTCCGCAAC
CTCGGCCTCGCCAGCGACGACGACGAGCCCACCGCCGCCGCCGCCACGGCCACCGCGCCT
CCCGACGGCAACGAGCGCCTCAGCGACCTGCTCGACCGCAGCTGGGCGCGCCCCGACCAG
CAGTTCGCCGCCTCCAGCTTCGACGAGTCCGTCCTCCCCTGGGAGAGGGATGAGGTCGCG
CGAGGAAGAGAGAACGAGGAGGACGGGGTGAAGAGGAGGAGGGTTAGGGCGCCCTCGCTG
GCCGAGCTCACGATCGAGGACGAGGAGCTGCGTCGCCTCCGGCGGCTGGGGATGACTCTT
CGGGACCGCATCACCGTGCCCAAGGCGGGCGTCACGCAAGCCGTCACGGAGAAGATCCAC
GACGCCTGGAGGAAATCAGAGTTGGTCCGGCTCAAGTTCCACGAGGACCTCGCGCACGAC
ATGAAAACTGCTCATGAGCTAGTCGAGCGACGGACAGGAGGATTGATCATATGGAGGTCT
GGGAGTGTTATGGTGGTTTACAGAGGGAGCAATTACAAAAGGCCTTTGAAATCTGAAACA
TTGGATGGTAACTCATCAGCGGTGAAAGGGGCAGACGGTACATTGTTCATCCCGGATGCA
TCAAGCCCCACAGAGCATGATAGCCAGGGGAAGGATGTAAACACCCAACGTGAGATTGCA
GCCAGATTAAATATGCAGAATACTGAGGACATGACTGAAGAGGAGCTGGAGTTCAATCAA
ATGCTTGATGAGTTGGGCCCTCGTTTTGTGGATTGGTGGGGAACAGGCATTTTACCTGTG
GATGCCGACTTGTTGCCTCAAACAATTCCTGGTTATAAAACACCATTTAGACTTCTTCCA
ACTGGAATGCGTTTGACCCTAACCAATGCAGAGCTGACTAATTTGCGGAAGTTAGCAAGG
GATCTTCCATGCCATTTTGCTCTAGGGAGAAACCGGAATCATCAAGGCCTTGCAGCAGCT
ATTGTTAAGCTCTGGGAGAAGAGTTTGGTGGTGAAAATAGCTGTGAAACGTGGAATCCAG
AATACAAACAACAAGCTAATGTCAGAAGAAATAAAGAATCTAACAGGGGGCACCTTGCTT
CTTCGAAATAAGTACTACATTGTAATATATCGTGGAAAAGACTTCCTTCCAACATCTGTT
GCAGCTGCTTTGGCTGAAAGAGAGGAGTTGACAAAAGATATCCAGAATGTAGAGGAGCAG
AAAAGATGCATTCCGGTTGTGCACTCAATGGATGACAGTTTAGATGGGCATGCTCTTGCG
GGTACTCTTGCTGAATTTCAGGAGGCTCAAGCTCGTTGGGGAAGGGAAGTAACTGCTAAG
GAGCAAGAAGAAATGAAAGAAGCATCTTCTAGATCAGTGAAGGAAAAGCTTTTCAAGAGA
CTAGAGCACAAACTTTCCATTGCACAGGCAAAAATACATAGAGCAGAGCGGTTACTATCA
AAGATAGAAGCTTCTATGGTCCTTGCTAATCCATCTGATGATAAAGAAATGATTACAGAT
GAGGAAAGATCTGTTTTCCGTAGAATCGGTTTGCGTCTTAAGGCATACTTGCCTGTTGGA
ATTCGTGGTGTCTTTGATGGCGTCATTGAAAATATGCACTTGCATTGGAAGCACAGGGAA
GTTGTCAAATTGATAACAAAGCAGAAGACTCTGCCCTTTGTTGAGGAGACGGCACGGCTT
CTAGAGTATGAGAGTGGCGGTATACTAGTCGCCATTGAAAGAGTTACAAAGGGCTATGCA
CTTATATTTTACCGTGGAAAGAATTATAGGAGGCCTATTAACATAAGGCCTAGGAATCTT
TTAACAAAAGCAAAGGCATTGAAGCGTGCTGTTGCAATGCAGCGTCATGAGGCCCTCAGT
CAGCATATAGCTGAACTGGAAAACAATATAAGGCAGATGAAGTTGGATTTGGGCATTGAG
GTTGATGAGGAATATGAAGAGGACGGTTCAGATTCAGAAAATGAGAATAATGAAGCAGTT
TCCTCTGCAAGATACGACGAGGTATCCAATCTTTTGAAACTGATGCTGTCTGTTTTAGAA
CCACCATAA

Peptide Sequence

PEP ID

Os05t0551900-00
PEP Infomation

pep chromosome:IRGSP-1.0:5:27441786:27445901:-1 gene:Os05g0551900 transcript:Os05t0551900-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to EMB1865 (embryo defective 1865); RNA binding. (Os05t0551900-00)
Sequence

MALSELPLHHSFRLSSRPHLRLLPLRLLSSRHASSSSSTTAAASSSSSSGGNRAPPAPNP
TRGAPWLQKWGPTDPAAPPPPPPAPSPTSSIDRIVHRLRNLGLASDDDEPTAAAATATAP
PDGNERLSDLLDRSWARPDQQFAASSFDESVLPWERDEVARGRENEEDGVKRRRVRAPSL
AELTIEDEELRRLRRLGMTLRDRITVPKAGVTQAVTEKIHDAWRKSELVRLKFHEDLAHD
MKTAHELVERRTGGLIIWRSGSVMVVYRGSNYKRPLKSETLDGNSSAVKGADGTLFIPDA
SSPTEHDSQGKDVNTQREIAARLNMQNTEDMTEEELEFNQMLDELGPRFVDWWGTGILPV
DADLLPQTIPGYKTPFRLLPTGMRLTLTNAELTNLRKLARDLPCHFALGRNRNHQGLAAA
IVKLWEKSLVVKIAVKRGIQNTNNKLMSEEIKNLTGGTLLLRNKYYIVIYRGKDFLPTSV
AAALAEREELTKDIQNVEEQKRCIPVVHSMDDSLDGHALAGTLAEFQEAQARWGREVTAK
EQEEMKEASSRSVKEKLFKRLEHKLSIAQAKIHRAERLLSKIEASMVLANPSDDKEMITD
EERSVFRRIGLRLKAYLPVGIRGVFDGVIENMHLHWKHREVVKLITKQKTLPFVEETARL
LEYESGGILVAIERVTKGYALIFYRGKNYRRPINIRPRNLLTKAKALKRAVAMQRHEALS
QHIAELENNIRQMKLDLGIEVDEEYEEDGSDSENENNEAVSSARYDEVSNLLKLMLSVLE
PP

Transcript Sequence

Transcript ID

Os05t0551900-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:27441786:27445901:-1 gene:Os05g0551900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to EMB1865 (embryo defective 1865); RNA binding. (Os05t0551900-00)
Sequence

ACCACACTCCATCCATGGCGCTCTCCGAGCTCCCGCTCCACCACTCCTTCCGCCTCTCCT
CCCGCCCCCACCTCCGCCTCCTCCCGCTCCGCCTTCTCTCCTCCCGCCACGCCTCCTCCT
CCTCCTCCACCACCGCCGCCGCGTCCTCCTCCTCCTCCTCCGGCGGCAACCGCGCCCCTC
CGGCTCCAAATCCAACCCGAGGCGCGCCGTGGCTGCAGAAGTGGGGGCCCACCGACCCCG
CCGCGCCGCCGCCACCACCTCCGGCTCCCTCCCCGACCTCCTCCATCGACCGAATCGTCC
ACCGCCTCCGCAACCTCGGCCTCGCCAGCGACGACGACGAGCCCACCGCCGCCGCCGCCA
CGGCCACCGCGCCTCCCGACGGCAACGAGCGCCTCAGCGACCTGCTCGACCGCAGCTGGG
CGCGCCCCGACCAGCAGTTCGCCGCCTCCAGCTTCGACGAGTCCGTCCTCCCCTGGGAGA
GGGATGAGGTCGCGCGAGGAAGAGAGAACGAGGAGGACGGGGTGAAGAGGAGGAGGGTTA
GGGCGCCCTCGCTGGCCGAGCTCACGATCGAGGACGAGGAGCTGCGTCGCCTCCGGCGGC
TGGGGATGACTCTTCGGGACCGCATCACCGTGCCCAAGGCGGGCGTCACGCAAGCCGTCA
CGGAGAAGATCCACGACGCCTGGAGGAAATCAGAGTTGGTCCGGCTCAAGTTCCACGAGG
ACCTCGCGCACGACATGAAAACTGCTCATGAGCTAGTCGAGCGACGGACAGGAGGATTGA
TCATATGGAGGTCTGGGAGTGTTATGGTGGTTTACAGAGGGAGCAATTACAAAAGGCCTT
TGAAATCTGAAACATTGGATGGTAACTCATCAGCGGTGAAAGGGGCAGACGGTACATTGT
TCATCCCGGATGCATCAAGCCCCACAGAGCATGATAGCCAGGGGAAGGATGTAAACACCC
AACGTGAGATTGCAGCCAGATTAAATATGCAGAATACTGAGGACATGACTGAAGAGGAGC
TGGAGTTCAATCAAATGCTTGATGAGTTGGGCCCTCGTTTTGTGGATTGGTGGGGAACAG
GCATTTTACCTGTGGATGCCGACTTGTTGCCTCAAACAATTCCTGGTTATAAAACACCAT
TTAGACTTCTTCCAACTGGAATGCGTTTGACCCTAACCAATGCAGAGCTGACTAATTTGC
GGAAGTTAGCAAGGGATCTTCCATGCCATTTTGCTCTAGGGAGAAACCGGAATCATCAAG
GCCTTGCAGCAGCTATTGTTAAGCTCTGGGAGAAGAGTTTGGTGGTGAAAATAGCTGTGA
AACGTGGAATCCAGAATACAAACAACAAGCTAATGTCAGAAGAAATAAAGAATCTAACAG
GGGGCACCTTGCTTCTTCGAAATAAGTACTACATTGTAATATATCGTGGAAAAGACTTCC
TTCCAACATCTGTTGCAGCTGCTTTGGCTGAAAGAGAGGAGTTGACAAAAGATATCCAGA
ATGTAGAGGAGCAGAAAAGATGCATTCCGGTTGTGCACTCAATGGATGACAGTTTAGATG
GGCATGCTCTTGCGGGTACTCTTGCTGAATTTCAGGAGGCTCAAGCTCGTTGGGGAAGGG
AAGTAACTGCTAAGGAGCAAGAAGAAATGAAAGAAGCATCTTCTAGATCAGTGAAGGAAA
AGCTTTTCAAGAGACTAGAGCACAAACTTTCCATTGCACAGGCAAAAATACATAGAGCAG
AGCGGTTACTATCAAAGATAGAAGCTTCTATGGTCCTTGCTAATCCATCTGATGATAAAG
AAATGATTACAGATGAGGAAAGATCTGTTTTCCGTAGAATCGGTTTGCGTCTTAAGGCAT
ACTTGCCTGTTGGAATTCGTGGTGTCTTTGATGGCGTCATTGAAAATATGCACTTGCATT
GGAAGCACAGGGAAGTTGTCAAATTGATAACAAAGCAGAAGACTCTGCCCTTTGTTGAGG
AGACGGCACGGCTTCTAGAGTATGAGAGTGGCGGTATACTAGTCGCCATTGAAAGAGTTA
CAAAGGGCTATGCACTTATATTTTACCGTGGAAAGAATTATAGGAGGCCTATTAACATAA
GGCCTAGGAATCTTTTAACAAAAGCAAAGGCATTGAAGCGTGCTGTTGCAATGCAGCGTC
ATGAGGCCCTCAGTCAGCATATAGCTGAACTGGAAAACAATATAAGGCAGATGAAGTTGG
ATTTGGGCATTGAGGTTGATGAGGAATATGAAGAGGACGGTTCAGATTCAGAAAATGAGA
ATAATGAAGCAGTTTCCTCTGCAAGATACGACGAGGTATCCAATCTTTTGAAACTGATGC
TGTCTGTTTTAGAACCACCATAA