Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0548600-00
CDS Infomation

cds chromosome:IRGSP-1.0:5:27219015:27220348:1 gene:Os05g0548600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os05t0548600-00)
Sequence

ATGCCCGCCGCCGCCGCCGCCGCGAGACTGCGCCGCCGCGGCCACCGCCGGAAGAAGTTC
GTGTACAGACCGAAGCCACCGCCGGAGCCGCACCCATTCCTCCTCCACCTCAAGTCGCTC
CCGTCCCCCGTCGCCGCCGCGGCCGCGCTCCTCTCCGCGCCGAGGCGCCTCCACGACCAC
CCCTTCGCCGCCTGCGTGCTCTACCGCCTCGCCCGCGCGCGCCTCTTCCCGCTCGTGCCC
CCGCTCCTCGCCGCGCTGCACTCCCGCGGCGCGCCGCTCCGTCCCACCGTGTTCGCCGCC
GTCATCGACCACCTCGGCGCCGCTTCCCGCCCCGACGCCGCGGTCGGCGTCTTCCGCACC
GTCCCGGCCTTCTGCTCCCACTCCGCCGCCACATTCCATTCCCTCCTCAACGCCCTTGTG
TCCAATGGCCGCACGGATGCCGCCCGGGACATGCTCCCGCTCGCCCCGAAGCTCGGCGTC
CGCCTCAACGCCGTGTCGTACAACATCATCCTCAAGGGCGCGTGTCTCCGGGACGGGTTC
ATGGGCGCCCGCGGCGTGCTCGACGAAATGCTCAGCCGGGGTGTGCGACCGACGGTGGTC
ACCTTCAACACGCTGGTGGGGTCGGCGTGCCGGGAGGGTGAGCTGGGCGCGGCGGAGCGG
CTCATCGACGAGATGGCGCGCCGTGGCGTGGCGCCAAACGCGGCCACCTACGCCCTCCTG
ATGCGGGGGCTCTGCGACGCCGACCGCCACGCCGACGCCGAGAAGCTGATGTTCGACATG
GAGTACCGCGGGTGCCAGGCCGACGTGGTGAACTACGGCGTGCTGATGAGCTCCCGCGCG
AGGCACGGCGACGCCGACGGCGTCAGGGAGCTCCTCTCCGCCATGCGCAAGCGGAAGCTC
AAGCCCGACGACGCGAGCTACAACATCCTGATCAGGTGCCTGTGCGACGCCGGCAGGGCC
GACGAGGCGCACAGGGCGCTGCTCGAGATGCAGCTCAGGGGCACCGTGCCGGGCGCCGCC
ACGTACCGCGTCCTCGTCGACGGGTGCTGCAGGGCTCGCGACTTCGACCTGGGTCTACGG
GTCTTCAACGCGATGATGGCGAGCGGACACTGCCCCCAAGCTCGCACCTTCAGGCACCTT
GCGAGAGGGCTCGGCGAGGACGGCAAGGCGGAGGAGGCGTTCTTCGTCTTGGAGCAGATG
GCGAGGAGGGAGATGAGCTTGGATGCAGATGGGTGGCAAGCTGTTGTCACGTGCGTTCGC
AGCAGCTGCAGCACCCAGGCAAGTGAGATCAAGCTTGTCAATGAGTTAGTGTTGTCAAAT
TGA

Peptide Sequence

PEP ID

Os05t0548600-00
PEP Infomation

pep chromosome:IRGSP-1.0:5:27219015:27220348:1 gene:Os05g0548600 transcript:Os05t0548600-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os05t0548600-00)
Sequence

MPAAAAAARLRRRGHRRKKFVYRPKPPPEPHPFLLHLKSLPSPVAAAAALLSAPRRLHDH
PFAACVLYRLARARLFPLVPPLLAALHSRGAPLRPTVFAAVIDHLGAASRPDAAVGVFRT
VPAFCSHSAATFHSLLNALVSNGRTDAARDMLPLAPKLGVRLNAVSYNIILKGACLRDGF
MGARGVLDEMLSRGVRPTVVTFNTLVGSACREGELGAAERLIDEMARRGVAPNAATYALL
MRGLCDADRHADAEKLMFDMEYRGCQADVVNYGVLMSSRARHGDADGVRELLSAMRKRKL
KPDDASYNILIRCLCDAGRADEAHRALLEMQLRGTVPGAATYRVLVDGCCRARDFDLGLR
VFNAMMASGHCPQARTFRHLARGLGEDGKAEEAFFVLEQMARREMSLDADGWQAVVTCVR
SSCSTQASEIKLVNELVLSN

Transcript Sequence

Transcript ID

Os05t0548600-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:27219015:27220348:1 gene:Os05g0548600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os05t0548600-00)
Sequence

ATGCCCGCCGCCGCCGCCGCCGCGAGACTGCGCCGCCGCGGCCACCGCCGGAAGAAGTTC
GTGTACAGACCGAAGCCACCGCCGGAGCCGCACCCATTCCTCCTCCACCTCAAGTCGCTC
CCGTCCCCCGTCGCCGCCGCGGCCGCGCTCCTCTCCGCGCCGAGGCGCCTCCACGACCAC
CCCTTCGCCGCCTGCGTGCTCTACCGCCTCGCCCGCGCGCGCCTCTTCCCGCTCGTGCCC
CCGCTCCTCGCCGCGCTGCACTCCCGCGGCGCGCCGCTCCGTCCCACCGTGTTCGCCGCC
GTCATCGACCACCTCGGCGCCGCTTCCCGCCCCGACGCCGCGGTCGGCGTCTTCCGCACC
GTCCCGGCCTTCTGCTCCCACTCCGCCGCCACATTCCATTCCCTCCTCAACGCCCTTGTG
TCCAATGGCCGCACGGATGCCGCCCGGGACATGCTCCCGCTCGCCCCGAAGCTCGGCGTC
CGCCTCAACGCCGTGTCGTACAACATCATCCTCAAGGGCGCGTGTCTCCGGGACGGGTTC
ATGGGCGCCCGCGGCGTGCTCGACGAAATGCTCAGCCGGGGTGTGCGACCGACGGTGGTC
ACCTTCAACACGCTGGTGGGGTCGGCGTGCCGGGAGGGTGAGCTGGGCGCGGCGGAGCGG
CTCATCGACGAGATGGCGCGCCGTGGCGTGGCGCCAAACGCGGCCACCTACGCCCTCCTG
ATGCGGGGGCTCTGCGACGCCGACCGCCACGCCGACGCCGAGAAGCTGATGTTCGACATG
GAGTACCGCGGGTGCCAGGCCGACGTGGTGAACTACGGCGTGCTGATGAGCTCCCGCGCG
AGGCACGGCGACGCCGACGGCGTCAGGGAGCTCCTCTCCGCCATGCGCAAGCGGAAGCTC
AAGCCCGACGACGCGAGCTACAACATCCTGATCAGGTGCCTGTGCGACGCCGGCAGGGCC
GACGAGGCGCACAGGGCGCTGCTCGAGATGCAGCTCAGGGGCACCGTGCCGGGCGCCGCC
ACGTACCGCGTCCTCGTCGACGGGTGCTGCAGGGCTCGCGACTTCGACCTGGGTCTACGG
GTCTTCAACGCGATGATGGCGAGCGGACACTGCCCCCAAGCTCGCACCTTCAGGCACCTT
GCGAGAGGGCTCGGCGAGGACGGCAAGGCGGAGGAGGCGTTCTTCGTCTTGGAGCAGATG
GCGAGGAGGGAGATGAGCTTGGATGCAGATGGGTGGCAAGCTGTTGTCACGTGCGTTCGC
AGCAGCTGCAGCACCCAGGCAAGTGAGATCAAGCTTGTCAATGAGTTAGTGTTGTCAAAT
TGATATTTTTTTCG