Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0548500-00
CDS Infomation	cds chromosome:IRGSP-1.0:5:27211900:27217567:1 gene:Os05g0548500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ABC TRANSPORTER B FAMILY MEMBER 19 description:Similar to MDR-like ABC transporter. (Os05t0548500-00)
Sequence	ATGGAAGAAGCATCCACAGCAAGAGCTGCTGATGGAGATAAGCGTGGAAAGGAAGAGAAT GACAGGAGGATGGCCAAGGATGGCAAGGTGGCATTCCATCACCTGTTCAAGTATGCGGAC AGCACAGATGTGGCGTTGATGCTGGTTGGCACCATAGCATCACTTGCAAGCGGCATGTCA CAAGTAATCATGACCATCATCTTCGGGCAGATGGTCGACGCCTTTGGGAAATCATCCCCG GGCAACATCCTTCATCAAGTCAACAAGGCGGTACTATACTTTGTCTACTTGGGCATTGGA TCAGGGATTGTTTGTTTTCTCCAGGTGTCATGCTGGTCTGTGACTGGGGAAAGGCAGGCC ACTCGCATTCGATCCTTGTATCTCAAGACAATTCTGCGACAAGATATGGCATTCTTTGAC AAGGAAATGACAACTGGACAAGTTATCTCCAGTATCTCTACTGACACTACACTAATTCAA GGTGCTACTGGTGAGAAGGTTGGGAAGTTTCTACAGCTTGTTACCACTTTCCCTGGTGGT TTTGTGCTTGCGTTCCTCAAAGGCTGGCTTCTCACTCTCGTCATGCTTTCTACCATACCA CCTTTTATCTTTGCTGCCGGAATTGTCTCAAAGATGTTAGCCAAAATATCTAACGAGGGC CTAGCATCATACAGCAAGGCAGGGGACATTGTTGAACAAACAGTTGGATCTATAAGAACG GTGGTATCCTTCAATGGTGAAAAGAAAGCCATTGGCCTCTACAACGATCTGATAAAGAAA GCATACAAGGGTGCGGTCAAGGAAGGGTTTATCCAAGGCTTTGGCATGGGTTTCCTCAAC TTAATCTATTTTTCCAGCTTTGGATTAATTGTATGGTATGGCAGTAAGCTAAGCCTCAGT AGAGGATATAGTGGGGCGGATATCATGAACATCTTGTTTGGTATCATGATAGGTGCAAGA GCTTTAGGTGATGCGACCCCCTGTACTGCTGCCTTTGAAGAAGGAAGAATTGCTGCTTAC AGATTGTTTAAAGTAATCAAGAGGAAACCAGAGATTGACTATGATGATACTAGCGGGATT GTGTTAGAAGATATCAAGGGTGACATAGAGCTAAAGGATGTATTCTTCAGTTACCCGAGC AGGTCGGAGCAATTGATATTTGATGGATTTTCGATGTGTGTATCAAATGGAACAACAATG GCCATAGTAGGGGAGAGTGGTAGCGGCAAATCAACTGTGATAAATCTAGTTGAGAGATTT TACGATCCACAGGCTGGTGAGGTTTTGATTGATGGAATGAACATCAAGAGCTTGAGGCTG GAGTGGATACGAGGGAAGATTGGCCTTGTTAACCAGGAACCAATACTCTTCATGACATCT ATCAAGGACAATATACTTTATGGCAAAGAGAATGCAACACTTGAAGAAATTAAGAGAGCA GCTGAGCTTGCCAATGCAGCAAGATTCATTGAGAGCATGCCTAATGGTTACGATACATTA GTTGGACAGCGTGGCGCTCAGCTTTCAGGGGGGCAGAAGCAAAGGATAGCAATTGCCAGA GCCATACTTAAAAACCCCAAAATCCTTTTGCTTGATGAAGCCACTAGTGCATTGGATTTG GAGTCTGAGAGGATAGTCCAAGACGCACTGAATCAGATCATGGTTGGAAGGACCACCCTT GTTGTGGCACACCGTTTGAGCACTGTGAGAAATGCCCACTGCATCTCAGTTGTACATAAA GGAAAAATCGCAGAACAAGGACATCATGATGAATTGGTTAAGGATCCTAACGGGGCATAC TCTCAACTTATTCGGCTACAAGAGGCGCAACAGGCAATCGACCCCCACTTAGATGGTCCA TTAAATAAAAGGAGCCAGTCACTCAAACGCTCATTAAGTAGAAATTCAGCTGGGAGCAGC TCCCATTCTTTAAACCTCCCCTTCAGCTTGCGTGGGGCCACTGAATTACTAGAGTATGAT GGTGCAGACGGTGAGAATCGCAATTTGAAAAATGATGGAAAGTTACCCAAAAAAGGATCC ATGGGTCGCCTAATTAGCCTAAACAAACCAGAAATCGCAATTCTTCTGTTTGGTTCTCTT GCAGCAGCAATTGATGGAGCTGTCTTCCCAATGATTGGTTTAGTATTGGCCAGTGCTGTT AAAGTTTTTTATGAATCACCAGACAAGCGAGAGAAAGATGCAACCTTTTGGGGATTGCTC TGTGTTGGCATGGGTGCAATTGCTATGATATCAAAGCTAGCAAATATCCTTCTATTTGCA ATCGCTGGTGGGAAACTTATAAAGCGCATCCGTGCTTTGACATTTCGAAGCATAGTACAC CAAGAAGTTTCTTGGTTTGATCATCCAGCAAATTCTAGTGGAGCTCTTGGTGGAAAGCTA TGTGTCGATGCCCTTAATGTGAGACGCCTTGTAGGCGATAATTTGGCCTTGCTTGTCCAA TGCACTGCAACCCTAGTTTGTGGAATATTAATTGCAATGATCGCGGACTGGAAACTTTCA TTGATAATCTTATTTGTAATTCCTTTAATCGGTCTACAGGGCTATGCTCAAGTGAGGTTC CTACAGGGGTTCAGTCAAGATGCTAAGATCATGTATGAAGAAGCAAGCCAAGTTGCAACT GATGCAGTTGGTAGCATCAGAACAGTAGCATCTTATTGTGCTGAGAAGAAAGTGATGACA AAATACAATCAGAAATGTCAAGCTTCTAGATACCAGGGAATAAGAACGGGGATAGTTGGA GGCCTTGGTTTTGGTTTCTCAAACATGATGTTGTTTATGACCTCTGCTCTTTGCTACTAT GTTGGTGCAAAGTTTGTTAGTCAAGGCAACTCTACTTTTGGCGATGTCTTCAAGGCTTTC TTTTCTTTAGTTGTGGCCATGCTGGGAGTATCATCAACTGCTGCCATGGCTTCTGACTCG AGCAAGGCTAAGGATTCTGCTTCTTCCATATTTGCAATCTTAGATAGAAAATCTCAAATT GATTCCAGCAGCAACGAAGGTTTAACCTTGGAGCTTGTCAAGGGTGACATTGAATTTACG CATATCAGTTTCAGATACCCATCCCGTCCAGATGTTCAAATCTTCAGTGACTTTACCTTG AGCATCCCCTCTGGGAAGACTGTGGCACTTGTTGGTCAGAGTGGCAGCGGCAAGTCTACA GCAATTGCGTTACTAGAACGGTTTTATGATCCTGATTCTGGTGTAATCTTATTAGATGGT GTAGAAATCAAGAAACTAGAGATCAGTTGGTTGAGGGACCAGATGGGATTAGTTAGCCAA GAACCAGTGCTTTTCAATGATACGATCCGTGCCAACATAGCTTATGGAAAGAATGAAGAA GTAACTGAGGAAGAGATTGTGGCAGCTGCTAAGGCAGCAAATGCCCACGAGTTCATATCA AGTATGCCAGAGGGGTACAGCACCAGTGTCGGAGAGAGGGGAACCCAATTATCAGGTGGG CAAAAACAACGAATAGCCATTGCAAGGGCCATCGTCAAGGATCCCAGGATACTACTCCTA GATGAGGCGACGAGCGCATTAGATGCTGAGTCAGAGCGCATCGTTCAAGATGCACTGGAC CATGTGATGGTTGGAAGGACAACCGTTGTTGTTGCACACCGCCTCTCAACAATCCAAGGC GCTGATATTATTGCAGTCCTGAAGGACGGTGCAATTGTTGAGAAGGGGAGGCACGAGGCA CTCATGGGGATTGCCAGTGGAGCTTATGCTTCACTTGTGGAACTTCGCCATAATGTGACA TAA

Peptide Sequence

PEP ID	Os05t0548500-00
PEP Infomation	pep chromosome:IRGSP-1.0:5:27211900:27217567:1 gene:Os05g0548500 transcript:Os05t0548500-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ABC TRANSPORTER B FAMILY MEMBER 19 description:Similar to MDR-like ABC transporter. (Os05t0548500-00)
Sequence	MEEASTARAADGDKRGKEENDRRMAKDGKVAFHHLFKYADSTDVALMLVGTIASLASGMS QVIMTIIFGQMVDAFGKSSPGNILHQVNKAVLYFVYLGIGSGIVCFLQVSCWSVTGERQA TRIRSLYLKTILRQDMAFFDKEMTTGQVISSISTDTTLIQGATGEKVGKFLQLVTTFPGG FVLAFLKGWLLTLVMLSTIPPFIFAAGIVSKMLAKISNEGLASYSKAGDIVEQTVGSIRT VVSFNGEKKAIGLYNDLIKKAYKGAVKEGFIQGFGMGFLNLIYFSSFGLIVWYGSKLSLS RGYSGADIMNILFGIMIGARALGDATPCTAAFEEGRIAAYRLFKVIKRKPEIDYDDTSGI VLEDIKGDIELKDVFFSYPSRSEQLIFDGFSMCVSNGTTMAIVGESGSGKSTVINLVERF YDPQAGEVLIDGMNIKSLRLEWIRGKIGLVNQEPILFMTSIKDNILYGKENATLEEIKRA AELANAARFIESMPNGYDTLVGQRGAQLSGGQKQRIAIARAILKNPKILLLDEATSALDL ESERIVQDALNQIMVGRTTLVVAHRLSTVRNAHCISVVHKGKIAEQGHHDELVKDPNGAY SQLIRLQEAQQAIDPHLDGPLNKRSQSLKRSLSRNSAGSSSHSLNLPFSLRGATELLEYD GADGENRNLKNDGKLPKKGSMGRLISLNKPEIAILLFGSLAAAIDGAVFPMIGLVLASAV KVFYESPDKREKDATFWGLLCVGMGAIAMISKLANILLFAIAGGKLIKRIRALTFRSIVH QEVSWFDHPANSSGALGGKLCVDALNVRRLVGDNLALLVQCTATLVCGILIAMIADWKLS LIILFVIPLIGLQGYAQVRFLQGFSQDAKIMYEEASQVATDAVGSIRTVASYCAEKKVMT KYNQKCQASRYQGIRTGIVGGLGFGFSNMMLFMTSALCYYVGAKFVSQGNSTFGDVFKAF FSLVVAMLGVSSTAAMASDSSKAKDSASSIFAILDRKSQIDSSSNEGLTLELVKGDIEFT HISFRYPSRPDVQIFSDFTLSIPSGKTVALVGQSGSGKSTAIALLERFYDPDSGVILLDG VEIKKLEISWLRDQMGLVSQEPVLFNDTIRANIAYGKNEEVTEEEIVAAAKAANAHEFIS SMPEGYSTSVGERGTQLSGGQKQRIAIARAIVKDPRILLLDEATSALDAESERIVQDALD HVMVGRTTVVVAHRLSTIQGADIIAVLKDGAIVEKGRHEALMGIASGAYASLVELRHNVT

Transcript Sequence

Transcript ID	Os05t0548500-00
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:27211900:27217567:1 gene:Os05g0548500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ABC TRANSPORTER B FAMILY MEMBER 19 description:Similar to MDR-like ABC transporter. (Os05t0548500-00)
Sequence	AAGTAGGCAGAACATGGAAGAAGCATCCACAGCAAGAGCTGCTGATGGAGATAAGCGTGG AAAGGAAGAGAATGACAGGAGGATGGCCAAGGATGGCAAGGTGGCATTCCATCACCTGTT CAAGTATGCGGACAGCACAGATGTGGCGTTGATGCTGGTTGGCACCATAGCATCACTTGC AAGCGGCATGTCACAAGTAATCATGACCATCATCTTCGGGCAGATGGTCGACGCCTTTGG GAAATCATCCCCGGGCAACATCCTTCATCAAGTCAACAAGGCGGTACTATACTTTGTCTA CTTGGGCATTGGATCAGGGATTGTTTGTTTTCTCCAGGTGTCATGCTGGTCTGTGACTGG GGAAAGGCAGGCCACTCGCATTCGATCCTTGTATCTCAAGACAATTCTGCGACAAGATAT GGCATTCTTTGACAAGGAAATGACAACTGGACAAGTTATCTCCAGTATCTCTACTGACAC TACACTAATTCAAGGTGCTACTGGTGAGAAGGTTGGGAAGTTTCTACAGCTTGTTACCAC TTTCCCTGGTGGTTTTGTGCTTGCGTTCCTCAAAGGCTGGCTTCTCACTCTCGTCATGCT TTCTACCATACCACCTTTTATCTTTGCTGCCGGAATTGTCTCAAAGATGTTAGCCAAAAT ATCTAACGAGGGCCTAGCATCATACAGCAAGGCAGGGGACATTGTTGAACAAACAGTTGG ATCTATAAGAACGGTGGTATCCTTCAATGGTGAAAAGAAAGCCATTGGCCTCTACAACGA TCTGATAAAGAAAGCATACAAGGGTGCGGTCAAGGAAGGGTTTATCCAAGGCTTTGGCAT GGGTTTCCTCAACTTAATCTATTTTTCCAGCTTTGGATTAATTGTATGGTATGGCAGTAA GCTAAGCCTCAGTAGAGGATATAGTGGGGCGGATATCATGAACATCTTGTTTGGTATCAT GATAGGTGCAAGAGCTTTAGGTGATGCGACCCCCTGTACTGCTGCCTTTGAAGAAGGAAG AATTGCTGCTTACAGATTGTTTAAAGTAATCAAGAGGAAACCAGAGATTGACTATGATGA TACTAGCGGGATTGTGTTAGAAGATATCAAGGGTGACATAGAGCTAAAGGATGTATTCTT CAGTTACCCGAGCAGGTCGGAGCAATTGATATTTGATGGATTTTCGATGTGTGTATCAAA TGGAACAACAATGGCCATAGTAGGGGAGAGTGGTAGCGGCAAATCAACTGTGATAAATCT AGTTGAGAGATTTTACGATCCACAGGCTGGTGAGGTTTTGATTGATGGAATGAACATCAA GAGCTTGAGGCTGGAGTGGATACGAGGGAAGATTGGCCTTGTTAACCAGGAACCAATACT CTTCATGACATCTATCAAGGACAATATACTTTATGGCAAAGAGAATGCAACACTTGAAGA AATTAAGAGAGCAGCTGAGCTTGCCAATGCAGCAAGATTCATTGAGAGCATGCCTAATGG TTACGATACATTAGTTGGACAGCGTGGCGCTCAGCTTTCAGGGGGGCAGAAGCAAAGGAT AGCAATTGCCAGAGCCATACTTAAAAACCCCAAAATCCTTTTGCTTGATGAAGCCACTAG TGCATTGGATTTGGAGTCTGAGAGGATAGTCCAAGACGCACTGAATCAGATCATGGTTGG AAGGACCACCCTTGTTGTGGCACACCGTTTGAGCACTGTGAGAAATGCCCACTGCATCTC AGTTGTACATAAAGGAAAAATCGCAGAACAAGGACATCATGATGAATTGGTTAAGGATCC TAACGGGGCATACTCTCAACTTATTCGGCTACAAGAGGCGCAACAGGCAATCGACCCCCA CTTAGATGGTCCATTAAATAAAAGGAGCCAGTCACTCAAACGCTCATTAAGTAGAAATTC AGCTGGGAGCAGCTCCCATTCTTTAAACCTCCCCTTCAGCTTGCGTGGGGCCACTGAATT ACTAGAGTATGATGGTGCAGACGGTGAGAATCGCAATTTGAAAAATGATGGAAAGTTACC CAAAAAAGGATCCATGGGTCGCCTAATTAGCCTAAACAAACCAGAAATCGCAATTCTTCT GTTTGGTTCTCTTGCAGCAGCAATTGATGGAGCTGTCTTCCCAATGATTGGTTTAGTATT GGCCAGTGCTGTTAAAGTTTTTTATGAATCACCAGACAAGCGAGAGAAAGATGCAACCTT TTGGGGATTGCTCTGTGTTGGCATGGGTGCAATTGCTATGATATCAAAGCTAGCAAATAT CCTTCTATTTGCAATCGCTGGTGGGAAACTTATAAAGCGCATCCGTGCTTTGACATTTCG AAGCATAGTACACCAAGAAGTTTCTTGGTTTGATCATCCAGCAAATTCTAGTGGAGCTCT TGGTGGAAAGCTATGTGTCGATGCCCTTAATGTGAGACGCCTTGTAGGCGATAATTTGGC CTTGCTTGTCCAATGCACTGCAACCCTAGTTTGTGGAATATTAATTGCAATGATCGCGGA CTGGAAACTTTCATTGATAATCTTATTTGTAATTCCTTTAATCGGTCTACAGGGCTATGC TCAAGTGAGGTTCCTACAGGGGTTCAGTCAAGATGCTAAGATCATGTATGAAGAAGCAAG CCAAGTTGCAACTGATGCAGTTGGTAGCATCAGAACAGTAGCATCTTATTGTGCTGAGAA GAAAGTGATGACAAAATACAATCAGAAATGTCAAGCTTCTAGATACCAGGGAATAAGAAC GGGGATAGTTGGAGGCCTTGGTTTTGGTTTCTCAAACATGATGTTGTTTATGACCTCTGC TCTTTGCTACTATGTTGGTGCAAAGTTTGTTAGTCAAGGCAACTCTACTTTTGGCGATGT CTTCAAGGCTTTCTTTTCTTTAGTTGTGGCCATGCTGGGAGTATCATCAACTGCTGCCAT GGCTTCTGACTCGAGCAAGGCTAAGGATTCTGCTTCTTCCATATTTGCAATCTTAGATAG AAAATCTCAAATTGATTCCAGCAGCAACGAAGGTTTAACCTTGGAGCTTGTCAAGGGTGA CATTGAATTTACGCATATCAGTTTCAGATACCCATCCCGTCCAGATGTTCAAATCTTCAG TGACTTTACCTTGAGCATCCCCTCTGGGAAGACTGTGGCACTTGTTGGTCAGAGTGGCAG CGGCAAGTCTACAGCAATTGCGTTACTAGAACGGTTTTATGATCCTGATTCTGGTGTAAT CTTATTAGATGGTGTAGAAATCAAGAAACTAGAGATCAGTTGGTTGAGGGACCAGATGGG ATTAGTTAGCCAAGAACCAGTGCTTTTCAATGATACGATCCGTGCCAACATAGCTTATGG AAAGAATGAAGAAGTAACTGAGGAAGAGATTGTGGCAGCTGCTAAGGCAGCAAATGCCCA CGAGTTCATATCAAGTATGCCAGAGGGGTACAGCACCAGTGTCGGAGAGAGGGGAACCCA ATTATCAGGTGGGCAAAAACAACGAATAGCCATTGCAAGGGCCATCGTCAAGGATCCCAG GATACTACTCCTAGATGAGGCGACGAGCGCATTAGATGCTGAGTCAGAGCGCATCGTTCA AGATGCACTGGACCATGTGATGGTTGGAAGGACAACCGTTGTTGTTGCACACCGCCTCTC AACAATCCAAGGCGCTGATATTATTGCAGTCCTGAAGGACGGTGCAATTGTTGAGAAGGG GAGGCACGAGGCACTCATGGGGATTGCCAGTGGAGCTTATGCTTCACTTGTGGAACTTCG CCATAATGTGACATAA