Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0545900-00
CDS Infomation

cds chromosome:IRGSP-1.0:5:27103789:27105687:1 gene:Os05g0545900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hypothetical conserved gene. (Os05t0545900-00)
Sequence

ATGAGAAGGCCCACCATAGAAGAGAAACTGGCGACCTACTCCATGTTCCAGGTTCGTCAG
GGATCCACCGTCCCGATCACCGCGCGGGAATGGCTGGACTCTCTGCCGCCGCCGCCGCCG
CCGTCGCCGTCGCAATCGGGGGCCAATTCCTCCACCTTCCTGCCGGCGGCGGCGGGGTCT
GCATGCGAGGCCCCGGCGAGGAAGAAGAGGACGCCAGGGAGGTGGAGGAGGATCCCTCGC
ACGCTACCCCATCCTTGCCTGAGAAAGAGGCCCATGACATGGGAGGAGCTTCTCGCGGAC
AGCTTGGACATGAGCGATAAGGCTCACTGCTTCAGGGAGGAGGATAAGCCCGCTTTCCGC
GAGTCCAAGGCGCAGATGGCCAGGTTCTATCAGAGGATGATCGACATCGAGAAGAACAAA
ATCGAACAAATCTTCCGACCCCGCGTCCTCTCCGATACACCTGAGCAACATTTGACCGCA
GAAGAGATGGAGGCAGAGCTCGCTGGCAAGAAAGTTAAGATTGAGCTTTGTACTGTTCTT
TTATCAAACTGTTTTCATGAGGTCTGTGGGTCCACATACGCCCATGTCAACTTTACTGCC
AGGGCTCAGAATGATGATCAGGCTAAGAAGAGCCTGTACTTTGCAGAGCTCAAATTGAAT
CCGGATCTTCTGGCAAAGAGGATGGAACGCTTTGCAGAGTTGAGCCTTGATCCTAATATT
GTTGGATGTGCTGATGATATCGAGCCCATGTGTGTCGTCTCTATCCACAACCTCCAGGGT
TCTTGTTTTGGTGGATGCCATGAGATCAACAGGAGAATTGATTATGTAATGACGAGGAAT
CAGGACTATGAGCGTTGTCACTCATGTAGTGACCGTATCAAGCATCCATATGGGACAGAA
TTTGTTGCAGGGCATGATAGTTCCAAGATTCCGTATTACACTGCAGGCTGA

Peptide Sequence

PEP ID

Os05t0545900-00
PEP Infomation

pep chromosome:IRGSP-1.0:5:27103789:27105687:1 gene:Os05g0545900 transcript:Os05t0545900-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hypothetical conserved gene. (Os05t0545900-00)
Sequence

MRRPTIEEKLATYSMFQVRQGSTVPITAREWLDSLPPPPPPSPSQSGANSSTFLPAAAGS
ACEAPARKKRTPGRWRRIPRTLPHPCLRKRPMTWEELLADSLDMSDKAHCFREEDKPAFR
ESKAQMARFYQRMIDIEKNKIEQIFRPRVLSDTPEQHLTAEEMEAELAGKKVKIELCTVL
LSNCFHEVCGSTYAHVNFTARAQNDDQAKKSLYFAELKLNPDLLAKRMERFAELSLDPNI
VGCADDIEPMCVVSIHNLQGSCFGGCHEINRRIDYVMTRNQDYERCHSCSDRIKHPYGTE
FVAGHDSSKIPYYTAG

Transcript Sequence

Transcript ID

Os05t0545900-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:27103789:27105687:1 gene:Os05g0545900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hypothetical conserved gene. (Os05t0545900-00)
Sequence

ATGAGAAGGCCCACCATAGAAGAGAAACTGGCGACCTACTCCATGTTCCAGGTTCGTCAG
GGATCCACCGTCCCGATCACCGCGCGGGAATGGCTGGACTCTCTGCCGCCGCCGCCGCCG
CCGTCGCCGTCGCAATCGGGGGCCAATTCCTCCACCTTCCTGCCGGCGGCGGCGGGGTCT
GCATGCGAGGCCCCGGCGAGGAAGAAGAGGACGCCAGGGAGGTGGAGGAGGATCCCTCGC
ACGCTACCCCATCCTTGCCTGAGAAAGAGGCCCATGACATGGGAGGAGCTTCTCGCGGAC
AGCTTGGACATGAGCGATAAGGCTCACTGCTTCAGGGAGGAGGATAAGCCCGCTTTCCGC
GAGTCCAAGGCGCAGATGGCCAGGTTCTATCAGAGGATGATCGACATCGAGAAGAACAAA
ATCGAACAAATCTTCCGACCCCGCGTCCTCTCCGATACACCTGAGCAACATTTGACCGCA
GAAGAGATGGAGGCAGAGCTCGCTGGCAAGAAAGTTAAGATTGAGCTTTGTACTGTTCTT
TTATCAAACTGTTTTCATGAGGTCTGTGGGTCCACATACGCCCATGTCAACTTTACTGCC
AGGGCTCAGAATGATGATCAGGCTAAGAAGAGCCTGTACTTTGCAGAGCTCAAATTGAAT
CCGGATCTTCTGGCAAAGAGGATGGAACGCTTTGCAGAGTTGAGCCTTGATCCTAATATT
GTTGGATGTGCTGATGATATCGAGCCCATGTGTGTCGTCTCTATCCACAACCTCCAGGGT
TCTTGTTTTGGTGGATGCCATGAGATCAACAGGAGAATTGATTATGTAATGACGAGGAAT
CAGGACTATGAGCGTTGTCACTCATGTAGTGACCGTATCAAGCATCCATATGGGACAGAA
TTTGTTGCAGGGCATGATAGTTCCAAGATTCCGTATTACACTGCAGGCTGA