Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0543100-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:26952587:26955912:-1 gene:Os05g0543100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Clathrin coat assembly protein AP47 (Clathrin coat associated protein AP47) (Golgi adaptor AP-1 47 kDa protein) (HA1 47 kDa subunit) (Clathrin assembly protein assembly protein complex 1 medium chain) (Uncoordinated protein 101). (Os05t0543100-01)
Sequence	ATGGCGGCGGGGGCGGTGTCGGCGCTGTTCCTGCTCGACATCAAGGGCCGCGTCCTCGTC TGGCGCGACTACCGCGGCGACGTCTCCGCGCTCCAGGCCGAGCGCTTCTTCACCAAGCTC CTCGACAAGGAGAGCGACGCGGAGGTGCTCTCCCCCGTCGTCCACGATGACGCCGGCGTC TCCTACATGTTCATCCAGCACAACAATGTGTTCCTCCTCACCGCGTCCCGTCAGAACTGC AACGCCGCCAGCATACTCCTCTTCCTCCACCGCGTCGTCGATGTGTTCAAGCATTACTTC GAGGAGCTGGAGGAGGAATCATTGAGGGACAACTTCGTCGTTGTGTATGAGTTGCTTGAT GAGATGATGGATTTCGGGTACCCACAATACACGGAAGCAATGATCCTGAGCGAGTTCATT AAAACGGACGCGTACAGGATGGAGGTCACTCAGAGGCCGCCCATGGCAGTGACAAATGCT GTGTCATGGAGGAGCGAGGGGATTCGGTACAAGAAGAATGAAGTGTTCTTGGATGTGGTG GAGAGTGTCAATATCCTCGTTAACAGCAATGGGCAGATAGTGAGGTCTGATGTCATCGGT GAGCTGAAAATGCGAACCTTTCTAAGTGGAATGCCCGAGTGCAAACTGGGGTTGAATGAT AGGGTTCTCTTGGAGGCTCAAGGCCGAACAACTAAAGGAAAAGCAATAGATTTGGACGAT ATCAAATTCCATCAGTGTGTTCGGTTGGCCAGATTTGAGAATGACAGGACTATATCCTTC ATTCCTCCAGATGGATCATTTGATCTGATGACTTACAGACTTAGCACCCAGGTGAAACCT CTTATCTGGGTAGAAGCACAAGTGGAGAAACATTCAAGAAGTCGGATACAGATCACAGTG AAGACAAGAAGTCAGTTCAAAGAAAGGAGCACAGCAACAAATGTAGAAATTGAAGTACCA GTGCCTGAGGATTCGACAAACCCAAATATAAGAACTTCAATGGGCTCTGCGGCATATGCA CCTGAGAGAGATGCGATGGTCTGGAAAATAAAATCATTTCCTGGTGGCAAGGAATATATG TGTAGAGCAGAATTTAGCCTTCCAAGCATAACATCAGAAGATGGAATGCCTGAAAAGAAG GCTCCGATACGTGTGAAATTTGAGATACCGTATTTTACCGTGTCGGGTATTCAGGTTCGC TATCTGAAAATCATCGAAAAGAGTGGATATCAGGCCCTTCCTTGGGTTCGATACATCACA ATGGCTGGTGAATATGAGTTGAGACTCATCTGA

Peptide Sequence

PEP ID	Os05t0543100-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:26952587:26955912:-1 gene:Os05g0543100 transcript:Os05t0543100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Clathrin coat assembly protein AP47 (Clathrin coat associated protein AP47) (Golgi adaptor AP-1 47 kDa protein) (HA1 47 kDa subunit) (Clathrin assembly protein assembly protein complex 1 medium chain) (Uncoordinated protein 101). (Os05t0543100-01)
Sequence	MAAGAVSALFLLDIKGRVLVWRDYRGDVSALQAERFFTKLLDKESDAEVLSPVVHDDAGV SYMFIQHNNVFLLTASRQNCNAASILLFLHRVVDVFKHYFEELEEESLRDNFVVVYELLD EMMDFGYPQYTEAMILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIRYKKNEVFLDVV ESVNILVNSNGQIVRSDVIGELKMRTFLSGMPECKLGLNDRVLLEAQGRTTKGKAIDLDD IKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQVEKHSRSRIQITV KTRSQFKERSTATNVEIEVPVPEDSTNPNIRTSMGSAAYAPERDAMVWKIKSFPGGKEYM CRAEFSLPSITSEDGMPEKKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYIT MAGEYELRLI

Transcript Sequence

Transcript ID	Os05t0543100-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:26952587:26955912:-1 gene:Os05g0543100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Clathrin coat assembly protein AP47 (Clathrin coat associated protein AP47) (Golgi adaptor AP-1 47 kDa protein) (HA1 47 kDa subunit) (Clathrin assembly protein assembly protein complex 1 medium chain) (Uncoordinated protein 101). (Os05t0543100-01)
Sequence	AGAGGTGCACGAGAGCGCGCGCGCCGCGCCGCGCCTCGCCTCGCTGATCCGGCAAGCAAA CCGCGGCGCCGCGACGCGACGCGAACCCCGCCGCGCCGCGAGTGTGGGGGAGCACGAATG GTAGCCGGCCGCGGTTAGGTAGGTGGGCGCCGCGGGGTGTCGATAGCTCCGGAGGGTGGG GGTGGGGGGAGCAGATCCAGATCCAGCGAGGGCGCGAGCAATGGCGGCGGGGGCGGTGTC GGCGCTGTTCCTGCTCGACATCAAGGGCCGCGTCCTCGTCTGGCGCGACTACCGCGGCGA CGTCTCCGCGCTCCAGGCCGAGCGCTTCTTCACCAAGCTCCTCGACAAGGAGAGCGACGC GGAGGTGCTCTCCCCCGTCGTCCACGATGACGCCGGCGTCTCCTACATGTTCATCCAGCA CAACAATGTGTTCCTCCTCACCGCGTCCCGTCAGAACTGCAACGCCGCCAGCATACTCCT CTTCCTCCACCGCGTCGTCGATGTGTTCAAGCATTACTTCGAGGAGCTGGAGGAGGAATC ATTGAGGGACAACTTCGTCGTTGTGTATGAGTTGCTTGATGAGATGATGGATTTCGGGTA CCCACAATACACGGAAGCAATGATCCTGAGCGAGTTCATTAAAACGGACGCGTACAGGAT GGAGGTCACTCAGAGGCCGCCCATGGCAGTGACAAATGCTGTGTCATGGAGGAGCGAGGG GATTCGGTACAAGAAGAATGAAGTGTTCTTGGATGTGGTGGAGAGTGTCAATATCCTCGT TAACAGCAATGGGCAGATAGTGAGGTCTGATGTCATCGGTGAGCTGAAAATGCGAACCTT TCTAAGTGGAATGCCCGAGTGCAAACTGGGGTTGAATGATAGGGTTCTCTTGGAGGCTCA AGGCCGAACAACTAAAGGAAAAGCAATAGATTTGGACGATATCAAATTCCATCAGTGTGT TCGGTTGGCCAGATTTGAGAATGACAGGACTATATCCTTCATTCCTCCAGATGGATCATT TGATCTGATGACTTACAGACTTAGCACCCAGGTGAAACCTCTTATCTGGGTAGAAGCACA AGTGGAGAAACATTCAAGAAGTCGGATACAGATCACAGTGAAGACAAGAAGTCAGTTCAA AGAAAGGAGCACAGCAACAAATGTAGAAATTGAAGTACCAGTGCCTGAGGATTCGACAAA CCCAAATATAAGAACTTCAATGGGCTCTGCGGCATATGCACCTGAGAGAGATGCGATGGT CTGGAAAATAAAATCATTTCCTGGTGGCAAGGAATATATGTGTAGAGCAGAATTTAGCCT TCCAAGCATAACATCAGAAGATGGAATGCCTGAAAAGAAGGCTCCGATACGTGTGAAATT TGAGATACCGTATTTTACCGTGTCGGGTATTCAGGTTCGCTATCTGAAAATCATCGAAAA GAGTGGATATCAGGCCCTTCCTTGGGTTCGATACATCACAATGGCTGGTGAATATGAGTT GAGACTCATCTGATTTTCACACCTCTGGTTGCTGGAAGAAATGATTGATTTCCTGGAGTC CAAGCCTCCCAGGGGGCGTTTACAGAGGCAACTCAGACGAACATTCACTCGCTGGATGGG CTCCCGAGGCTTCATGGTTCCATCTCGCGCAAGCGAGGAAAGCTGCTGACAGCCATGTTA TTGATTTTACCCATGTTTTGCTGCAAGTTTGTCATCAGTATAGGTCCCCAGAATCTTCAT TTCTTTTCTGCGTTTTGTTCCCAGCCGATATCTCTTGTATCATTGTAAAATTTATTTAAT CAACTGATGTCACAAGCTTGGATTTTTTTTTGTATCTCCTGTACCTAATTAACAAGCTTG GATCATGTATACCACTATGTATATCTCTCCTTTCCATC