Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0543000-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:26948391:26949737:1 gene:Os05g0543000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:pectin methylesterase inhibitor protein description:Pectinesterase inhibitor domain containing protein. (Os05t0543000-01)
Sequence	ATGGCGCGATTCGTCATCATCTCCGTCGTCGTCGTCGCCGCCTTCGCCGCTGCCGCTGTC GTTGAGGCCCGGGTTGGACCTATCGACGTCGCTCCGACCAACCTGATCACCAACCCACTC GGTGCCATCATCGACAATGGCCGCAAGATCACCGGCGCCGTCGTCGACGAGTGCGCCTGG ACCTGCGATCATGTCGCGGCGGGTAACAAGAAGATGTGCAACACGCTGAGGAAGCTGCCG GGGGTGAGCTCGCCGAAGGAGCTCCTGACGGCGGCGGTGAAGCTGTCGATGAGGAAGGCG AAGGCGGCGAGGGCGAGGTTCGAGGCGGCGGCGAGGGCGGCGGAGAAGGGGACGCCGATG GAGTCCATCCTGGACACCTGCAAGGAAGGGTACGACAGCACGGTGTCGGCGCTGCAGGAG GTGCAGCGCTGCATCGACGCCAACGACAGCAAGGCGAGCCTCATCACCAAGATGTCGGCG GCGACCACCTTCACCGGCGACTGCGGCAACGCCTACGAGGAGCGGGAGCTGGAGCCCAGC CTCGCGCTCAAGGCCACCAAGAACAACGTCAACCGCGTCGTCACCGGCGCCCTCGCCATC GCCGCCAAGCTCAAGCTATAA

Peptide Sequence

PEP ID	Os05t0543000-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:26948391:26949737:1 gene:Os05g0543000 transcript:Os05t0543000-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:pectin methylesterase inhibitor protein description:Pectinesterase inhibitor domain containing protein. (Os05t0543000-01)
Sequence	MARFVIISVVVVAAFAAAAVVEARVGPIDVAPTNLITNPLGAIIDNGRKITGAVVDECAW TCDHVAAGNKKMCNTLRKLPGVSSPKELLTAAVKLSMRKAKAARARFEAAARAAEKGTPM ESILDTCKEGYDSTVSALQEVQRCIDANDSKASLITKMSAATTFTGDCGNAYEERELEPS LALKATKNNVNRVVTGALAIAAKLKL

Transcript Sequence

Transcript ID	Os05t0543000-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:26948391:26949737:1 gene:Os05g0543000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:pectin methylesterase inhibitor protein description:Pectinesterase inhibitor domain containing protein. (Os05t0543000-01)
Sequence	AGCCATCACCAAACCTTTTAGCTTCTCAGCCTTTTGCCTCTCTTTCTACTCTCTTTCTTG GCCGTCTCTCTTATATCCCTCAATTTAACCATCGAGGGCGGCCAAAAAAAAGAGAGAAAG GAAGAGCAAAATAACACATTACACCATGGCGCGATTCGTCATCATCTCCGTCGTCGTCGT CGCCGCCTTCGCCGCTGCCGCTGTCGTTGAGGCCCGGGTTGGACCTATCGACGTCGCTCC GACCAACCTGATCACCAACCCACTCGGTGCCATCATCGACAATGGCCGCAAGATCACCGG CGCCGTCGTCGACGAGTGCGCCTGGACCTGCGATCATGTCGCGGCGGGTAACAAGAAGAT GTGCAACACGCTGAGGAAGCTGCCGGGGGTGAGCTCGCCGAAGGAGCTCCTGACGGCGGC GGTGAAGCTGTCGATGAGGAAGGCGAAGGCGGCGAGGGCGAGGTTCGAGGCGGCGGCGAG GGCGGCGGAGAAGGGGACGCCGATGGAGTCCATCCTGGACACCTGCAAGGAAGGGTACGA CAGCACGGTGTCGGCGCTGCAGGAGGTGCAGCGCTGCATCGACGCCAACGACAGCAAGGC GAGCCTCATCACCAAGATGTCGGCGGCGACCACCTTCACCGGCGACTGCGGCAACGCCTA CGAGGAGCGGGAGCTGGAGCCCAGCCTCGCGCTCAAGGCCACCAAGAACAACGTCAACCG CGTCGTCACCGGCGCCCTCGCCATCGCCGCCAAGCTCAAGCTATAATTAGCCAACTGATC ATCAATCGATATGAATGATTGATCAACTATAAAATTACACCTAGCTCATGCATGCGTCCG CGCGTTATGTGTGTACGCACGCATGCATATGTGTAAGATCGATCAACAGATCACAGAAGT GGTGGCGTATCTCGCACTTGTG