Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0542900-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:26943380:26945786:1 gene:Os05g0542900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectin lyase fold domain containing protein. (Os05t0542900-01)
Sequence	ATGCCACCTAGTTCAAGGATGGCGCCGCCGCCGCTCGCCGGCGTGGTGGTGGTCGCCGCC GCGCTCCTGCTCCTCCTGCCGGAGGCCGCCGAGCCCCGCACTCTCCTCTCGCTCGACGAC TTCGGCGCCGTCGGCGACGGCGTCGCCAACGACACGCAGGCCTTGGTGGACGCCTGGAGC GCCGCCTGCGCCACCGGCGACCACACCTTCCTCCACGTCCCCGCCGCCAAGTCCTACCTC GTCTGGCCGGTCACCCTCGCCGGACCTTGCAGGGAGGAGATCAAGCTCTTCATCTCCGGC AACATCGTCGCGCCGGAGAGCCCCGACGAGTGGCCGGAGGGCGGCGGCGGCGGCGGCGAA TGGCTCCACTTCGTCGGCGTCAGCGACCTGACGCTGAGCGGCGGGGGCGTCATCGACGGC CGTGGCCACCGGTGGTGGGCCCGGTCGTGCAAGGCAAAGCACAACGCGACCGAGAATTGC ACTACCCAGGCTGCTCCAAAGGCGCTGCACTTCGAGGATTGTCAGGGTATCAGCGTGATG GGGATCACGCTGCAGAACAGCCAGGAGAGCCACCTGACGTTCACCCGGTGCTCGCACGTC AAGGCCAACTACCTGAGGATAACCTCGCCGGAGGACAGCCCGGACACCACCGGAGTTCAC GTCGTCAGCTCGCGCAATGTTCACATCATGGACGACTCGATCTCCACAGGTCATGATTGT GTCTCGATTGTGGGCAATTCTACGGATGTTCGTCTAAGAGCCATCTCATGTGGACCTGGC CATGGTATCAGTATTGGAGGATTAGGCGAGAACCGAAGTTACCACAGGGTAGAAAAGATC AAGATGGACACCCTGTTCATTTCCAACACTGAAAACGGCGTACGCGTCAAGACCTTCCAG GGCGGCTGCGGCACCGCCCGGAAAATGAAGTTCGGTGACATCCTTATGAAGAACGTCAAG AACCCGATCGTCATCGATCAGCAGAACTCCTCGAGCAACGAAATTCCCTGCGGATCAAAG AACGGAAGCGCGGTGACGGTGGGGGAGATCAGCTACACGGACATCACCGGCACGTCGGCG TCGGAGCGGGCGGTGACGTTCGCGTGCAGCGAGGCGGCGCCGTGCAGCAAGCTGTCGCTG GAGAACGTGAACATCACCATGGCCGGCGGGCAGAACGCGTCCGCCTACTGCCACCACGCG TTCGGGAAGAGCGTCGGCGTCGTCGTCCCGGACTCGTGCCTCGGGAAGGAGGACTACCTC CGCCGGCAAGTCCCCGCCTCCGCCGCCGCCGCCGGCGGCGGAACGCAGGAGAAGGGAGGA GAAGATGACGATCGGTGA

Peptide Sequence

PEP ID	Os05t0542900-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:26943380:26945786:1 gene:Os05g0542900 transcript:Os05t0542900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectin lyase fold domain containing protein. (Os05t0542900-01)
Sequence	MPPSSRMAPPPLAGVVVVAAALLLLLPEAAEPRTLLSLDDFGAVGDGVANDTQALVDAWS AACATGDHTFLHVPAAKSYLVWPVTLAGPCREEIKLFISGNIVAPESPDEWPEGGGGGGE WLHFVGVSDLTLSGGGVIDGRGHRWWARSCKAKHNATENCTTQAAPKALHFEDCQGISVM GITLQNSQESHLTFTRCSHVKANYLRITSPEDSPDTTGVHVVSSRNVHIMDDSISTGHDC VSIVGNSTDVRLRAISCGPGHGISIGGLGENRSYHRVEKIKMDTLFISNTENGVRVKTFQ GGCGTARKMKFGDILMKNVKNPIVIDQQNSSSNEIPCGSKNGSAVTVGEISYTDITGTSA SERAVTFACSEAAPCSKLSLENVNITMAGGQNASAYCHHAFGKSVGVVVPDSCLGKEDYL RRQVPASAAAAGGGTQEKGGEDDDR

Transcript Sequence

Transcript ID	Os05t0542900-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:26943380:26945786:1 gene:Os05g0542900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectin lyase fold domain containing protein. (Os05t0542900-01)
Sequence	AGAAAGTCGAAGCTGCTGATCTTGGATGCCACCTAGTTCAAGGATGGCGCCGCCGCCGCT CGCCGGCGTGGTGGTGGTCGCCGCCGCGCTCCTGCTCCTCCTGCCGGAGGCCGCCGAGCC CCGCACTCTCCTCTCGCTCGACGACTTCGGCGCCGTCGGCGACGGCGTCGCCAACGACAC GCAGGCCTTGGTGGACGCCTGGAGCGCCGCCTGCGCCACCGGCGACCACACCTTCCTCCA CGTCCCCGCCGCCAAGTCCTACCTCGTCTGGCCGGTCACCCTCGCCGGACCTTGCAGGGA GGAGATCAAGCTCTTCATCTCCGGCAACATCGTCGCGCCGGAGAGCCCCGACGAGTGGCC GGAGGGCGGCGGCGGCGGCGGCGAATGGCTCCACTTCGTCGGCGTCAGCGACCTGACGCT GAGCGGCGGGGGCGTCATCGACGGCCGTGGCCACCGGTGGTGGGCCCGGTCGTGCAAGGC AAAGCACAACGCGACCGAGAATTGCACTACCCAGGCTGCTCCAAAGGCGCTGCACTTCGA GGATTGTCAGGGTATCAGCGTGATGGGGATCACGCTGCAGAACAGCCAGGAGAGCCACCT GACGTTCACCCGGTGCTCGCACGTCAAGGCCAACTACCTGAGGATAACCTCGCCGGAGGA CAGCCCGGACACCACCGGAGTTCACGTCGTCAGCTCGCGCAATGTTCACATCATGGACGA CTCGATCTCCACAGGTCATGATTGTGTCTCGATTGTGGGCAATTCTACGGATGTTCGTCT AAGAGCCATCTCATGTGGACCTGGCCATGGTATCAGTATTGGAGGATTAGGCGAGAACCG AAGTTACCACAGGGTAGAAAAGATCAAGATGGACACCCTGTTCATTTCCAACACTGAAAA CGGCGTACGCGTCAAGACCTTCCAGGGCGGCTGCGGCACCGCCCGGAAAATGAAGTTCGG TGACATCCTTATGAAGAACGTCAAGAACCCGATCGTCATCGATCAGCAGAACTCCTCGAG CAACGAAATTCCCTGCGGATCAAAGAACGGAAGCGCGGTGACGGTGGGGGAGATCAGCTA CACGGACATCACCGGCACGTCGGCGTCGGAGCGGGCGGTGACGTTCGCGTGCAGCGAGGC GGCGCCGTGCAGCAAGCTGTCGCTGGAGAACGTGAACATCACCATGGCCGGCGGGCAGAA CGCGTCCGCCTACTGCCACCACGCGTTCGGGAAGAGCGTCGGCGTCGTCGTCCCGGACTC GTGCCTCGGGAAGGAGGACTACCTCCGCCGGCAAGTCCCCGCCTCCGCCGCCGCCGCCGG CGGCGGAACGCAGGAGAAGGGAGGAGAAGATGACGATCGGTGAAACCGTGGCAGGTTAAG TCAGCGTGTGTAGTGGACGTGTTCACATCCTTTACCATAATAACGCTATTATTACATGTA CTAACGTGTGAGGATAATAAAAGTTTAGAACCC