Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0542800-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:26940318:26943164:1 gene:Os05g0542800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectin lyase fold/virulence factor domain containing protein. (Os05t0542800-01);Similar to polygalacturonase. (Os05t0542800-02);Similar to polygalacturonase. (Os05t0542800-03)
Sequence	ATGGCGATTCTTCGTGTGTCCGTGATGCGGCTGGTTGTTGCGGCCATGGCTGTTGCAGCT GGTGTTCTCTTCTTCTCCGGCGCCGGCGAGGCGCGCGTGCTCCTCACCCTCGACGACTTC GGCGCCGTCGGCGACGGCATTACCAACGACACGCAGGCCTTCTTGGACGCCTGGAACGCC GCCTGCGCCTCGACGGAGCCGGCCGTCCTCGCCGTGCCGGCCGGGAAGACGTACCAGATC TGGCCGGTGCGGCTCGCCGGGCCCTGCAAGAAGAAGCTCAAGCTCATGATTTCCGGGACG ATCGCGGCGCCGGCGAGCCCCGACGAGTGGGCGGGGCGCGACCCGACGAAGTGGCTCTAC GTCTTCCGCGTCGACGACCTGTCCGTCTCCGGCGGCGGCACCATCGACGGCATGGGCGCC GAGTGGTGGGCGCGCTCCTGCAAGCGCAAGAAGACCAAGCCTTGCAGCACGGTGTCTGCT CCCAAGGCGCTGCAGTTCGAGGAGTGCAGGCGGGTGAGCGTGCAGGGGATCACGATGCAG AACGGGCCGCAGTTCCACCTGATGTTCACCCGGTGCACGGACGTCAAGGCAAGCTTCCTC CGCGTCGTGGCGCCGGAGAGCAGCCCGAACACCGACGGGATCCACCTCAACGACACCACC CATGCCCAGATCATGGACAACCTCATCTCCACAGGAGATGATTGCGTGTCAATGGTTGGC AATTGCTCTGACGTCCGAGTGAAGGACATATCATGTGGGCCTGGACATGGCATCAGTATC GGAAGCTTAGGCAAGAACCGGACCACTGACAGAATAGAGAACGTGAGGGTGGACACCTGC TTGCTGACAAACACAACCAACGGTGTACGGATCAAGAGTTGGCAGGGAGGGATGGGGTAT GCTCACAACCTGAGGTTCGAGGGCATCGTGATGAAGAACGTCTCCAATCCAATCATCATC GATCAGTACTACTGTGACCAACCAACACCCTGTGCAAACCAGACGCAGGCGGTGGAGGTG CGCAAGATCGAGTTCGCGGGCATCCGGGGCACGTCGGCGACGGAGCAGGCGATCAAGCTG GCGTGCAGCGACGCCGTGCCGTGCCGGGATCTGGAGCTGAGGAACGTCAACCTGACCATG GTGGGCGTCGTGCCGGCGTCCTGCCTCGCCAAGGCGCCCCACAGGATGCTCGGCGACGCC ACGCCGGCGGCCAGAGTCGGTTCTTGA

Peptide Sequence

PEP ID	Os05t0542800-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:26940318:26943164:1 gene:Os05g0542800 transcript:Os05t0542800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectin lyase fold/virulence factor domain containing protein. (Os05t0542800-01);Similar to polygalacturonase. (Os05t0542800-02);Similar to polygalacturonase. (Os05t0542800-03)
Sequence	MAILRVSVMRLVVAAMAVAAGVLFFSGAGEARVLLTLDDFGAVGDGITNDTQAFLDAWNA ACASTEPAVLAVPAGKTYQIWPVRLAGPCKKKLKLMISGTIAAPASPDEWAGRDPTKWLY VFRVDDLSVSGGGTIDGMGAEWWARSCKRKKTKPCSTVSAPKALQFEECRRVSVQGITMQ NGPQFHLMFTRCTDVKASFLRVVAPESSPNTDGIHLNDTTHAQIMDNLISTGDDCVSMVG NCSDVRVKDISCGPGHGISIGSLGKNRTTDRIENVRVDTCLLTNTTNGVRIKSWQGGMGY AHNLRFEGIVMKNVSNPIIIDQYYCDQPTPCANQTQAVEVRKIEFAGIRGTSATEQAIKL ACSDAVPCRDLELRNVNLTMVGVVPASCLAKAPHRMLGDATPAARVGS

Transcript Sequence

Transcript ID	Os05t0542800-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:26940318:26943164:1 gene:Os05g0542800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectin lyase fold/virulence factor domain containing protein. (Os05t0542800-01);Similar to polygalacturonase. (Os05t0542800-02);Similar to polygalacturonase. (Os05t0542800-03)
Sequence	ATTCAACCGCAAAAGCAACCTAGTTAGTACAAGGCAGCACATGCGCTGCTATTAGTAGCA GCTGCTAGGTGTCCTGCTATTTTGTTGCCCTGCTTCCTCTAATCTTCCTCTTCTTCTTCT CCTTCAATCGTGTCGTGTCGTCTCCTTGTTCGGTTCTTTGGTGCAGGAAGCAATGGCGAT TCTTCGTGTGTCCGTGATGCGGCTGGTTGTTGCGGCCATGGCTGTTGCAGCTGGTGTTCT CTTCTTCTCCGGCGCCGGCGAGGCGCGCGTGCTCCTCACCCTCGACGACTTCGGCGCCGT CGGCGACGGCATTACCAACGACACGCAGGCCTTCTTGGACGCCTGGAACGCCGCCTGCGC CTCGACGGAGCCGGCCGTCCTCGCCGTGCCGGCCGGGAAGACGTACCAGATCTGGCCGGT GCGGCTCGCCGGGCCCTGCAAGAAGAAGCTCAAGCTCATGATTTCCGGGACGATCGCGGC GCCGGCGAGCCCCGACGAGTGGGCGGGGCGCGACCCGACGAAGTGGCTCTACGTCTTCCG CGTCGACGACCTGTCCGTCTCCGGCGGCGGCACCATCGACGGCATGGGCGCCGAGTGGTG GGCGCGCTCCTGCAAGCGCAAGAAGACCAAGCCTTGCAGCACGGTGTCTGCTCCCAAGGC GCTGCAGTTCGAGGAGTGCAGGCGGGTGAGCGTGCAGGGGATCACGATGCAGAACGGGCC GCAGTTCCACCTGATGTTCACCCGGTGCACGGACGTCAAGGCAAGCTTCCTCCGCGTCGT GGCGCCGGAGAGCAGCCCGAACACCGACGGGATCCACCTCAACGACACCACCCATGCCCA GATCATGGACAACCTCATCTCCACAGGAGATGATTGCGTGTCAATGGTTGGCAATTGCTC TGACGTCCGAGTGAAGGACATATCATGTGGGCCTGGACATGGCATCAGTATCGGAAGCTT AGGCAAGAACCGGACCACTGACAGAATAGAGAACGTGAGGGTGGACACCTGCTTGCTGAC AAACACAACCAACGGTGTACGGATCAAGAGTTGGCAGGGAGGGATGGGGTATGCTCACAA CCTGAGGTTCGAGGGCATCGTGATGAAGAACGTCTCCAATCCAATCATCATCGATCAGTA CTACTGTGACCAACCAACACCCTGTGCAAACCAGACGCAGGCGGTGGAGGTGCGCAAGAT CGAGTTCGCGGGCATCCGGGGCACGTCGGCGACGGAGCAGGCGATCAAGCTGGCGTGCAG CGACGCCGTGCCGTGCCGGGATCTGGAGCTGAGGAACGTCAACCTGACCATGGTGGGCGT CGTGCCGGCGTCCTGCCTCGCCAAGGCGCCCCACAGGATGCTCGGCGACGCCACGCCGGC GGCCAGAGTCGGTTCTTGATCGCCGCCGGCAATGCCCGATCCTGGCAACGATCACCGGAA AAAAGCTGAAGTATAAATACCGTACACGTAGGTGTAGAAACTGTTGCCGTATTTGGGAGA GTGTATGAGTACAGAGAGTTGTAAGCTGTATACGACGTTTGTGTCAAGAATTTTTTAGAG GGCATTATGTGAAGTTAAAATGGATACAAAAAAACATAATTTTACCGGAGTT