Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0542600-01
CDS Infomation

cds chromosome:IRGSP-1.0:5:26930547:26935797:1 gene:Os05g0542600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Mov34/MPN/PAD-1 family protein. (Os05t0542600-01)
Sequence

ATGTCGCTGACGGAGGTCAGGATCGGGGAGGAGGTGTGGCTCACCTGCCTCTCCCACGCC
CTCACCACCGAGACGGAGGAGGTCATGGGCCTCCTCTTCGGCGACATCAAGCATTCGAGC
AGGGGCGGGGTGACTGCTCTGATATGGGGGGCGTCGCCGCAGATGAGGTGCGAGCGGAAG
AAGGACAGGGTGGAGGTCAACCCCGAGCTGCTCGCGGCGGCGACGGCGCAGGCCGAGAGC
TTGTCGGCCACCATCGGCGAGAAAACGAGGGTGATTGGATGGTACCACTCGCACCCGCAT
ATCACCGTTCTGCCTTCCCATGTAGATGTTCGGACCCAGGCAATGTTTCAGTTGATGGAG
CCAGGTTTTGTGGGTCTGATATTCTCTTGTTTTAGCGAAGATGCTCAAAAGGTTGGAAAA
ATCCAAGTGATTGCTTTTCAGTCACTTGGTGGAAATCAGCAATCTGTTGTTCCTGTTAAT
GATCCAGTCATTAACCTTGAATCATCTTGGAGTTCGTTGGATGATACCTCACATCCGGCA
TTGATTGAAGGCATTGAACAAGACACGGGGGATTCTAAATCTTCAAGAAATAGCAAGGTG
TGGGCAAAATCTTCTGATGTGGATTTCTATCCTCATTTTGACGCCAATCACTCAGCAAAA
CATCAATCCAAAGAAAATGCTATAGTTGCATACGATCCCAATAATGCACCTGAGACCCCT
GTTGATCTAGATGAATCAGATATGACCCCAAGCATCCAGGAGGCGTTGCACAGGTCAAAC
ATGGACATTAGTGGTGCAGAATATGTAAGAAAGGAGGTGCCACTTTATGTATTTCCGACC
AGGCATCTGCTAAAGCTGGACACCACATTAACTTCTTACTGTGATATGCAACATGTCGTT
TTCGAAGAGGAAAAATCAGCATATAATCAAGCCATGCATCAAAATATTCGTGATGGGAAG
ATCCACCCACTTACATCTATTCACCATGCATCTACATACAACTCATCTCTCTGCAAATTA
ATGGAATATTGTTTGAGCCCTGCTATAACTGTACTTCAGGATCGTCTGAAGGAAAATGAA
CTTCGGTTATCTATGCTAATGGAGGAGGCTAAACAACTTGAGGCAGAGAACCAGAGCATG
AGAAATGATTCTCCTCGTCGCTTGATGTATCATGGGACTAGTGGCACCAGTTCTCTGATG
GCACAGGATAAGCAAATGAGCCCCAGAAGTCCTAGCGGCACCGGCCGGAGAAAGGCTTCC
TGA

Peptide Sequence

PEP ID

Os05t0542600-01
PEP Infomation

pep chromosome:IRGSP-1.0:5:26930547:26935797:1 gene:Os05g0542600 transcript:Os05t0542600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Mov34/MPN/PAD-1 family protein. (Os05t0542600-01)
Sequence

MSLTEVRIGEEVWLTCLSHALTTETEEVMGLLFGDIKHSSRGGVTALIWGASPQMRCERK
KDRVEVNPELLAAATAQAESLSATIGEKTRVIGWYHSHPHITVLPSHVDVRTQAMFQLME
PGFVGLIFSCFSEDAQKVGKIQVIAFQSLGGNQQSVVPVNDPVINLESSWSSLDDTSHPA
LIEGIEQDTGDSKSSRNSKVWAKSSDVDFYPHFDANHSAKHQSKENAIVAYDPNNAPETP
VDLDESDMTPSIQEALHRSNMDISGAEYVRKEVPLYVFPTRHLLKLDTTLTSYCDMQHVV
FEEEKSAYNQAMHQNIRDGKIHPLTSIHHASTYNSSLCKLMEYCLSPAITVLQDRLKENE
LRLSMLMEEAKQLEAENQSMRNDSPRRLMYHGTSGTSSLMAQDKQMSPRSPSGTGRRKAS

Transcript Sequence

Transcript ID

Os05t0542600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:26930547:26935797:1 gene:Os05g0542600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Mov34/MPN/PAD-1 family protein. (Os05t0542600-01)
Sequence

GAAGAGGCAAACCAAACCAAACCCAACCCCTCCTCCGCCGCGGCCCGAAACCCCACCGGA
TCGGCGGCGGCGGCGGCGGCAGGAGGCCGGCGGGCGGAGGAGATGTCGCTGACGGAGGTC
AGGATCGGGGAGGAGGTGTGGCTCACCTGCCTCTCCCACGCCCTCACCACCGAGACGGAG
GAGGTCATGGGCCTCCTCTTCGGCGACATCAAGCATTCGAGCAGGGGCGGGGTGACTGCT
CTGATATGGGGGGCGTCGCCGCAGATGAGGTGCGAGCGGAAGAAGGACAGGGTGGAGGTC
AACCCCGAGCTGCTCGCGGCGGCGACGGCGCAGGCCGAGAGCTTGTCGGCCACCATCGGC
GAGAAAACGAGGGTGATTGGATGGTACCACTCGCACCCGCATATCACCGTTCTGCCTTCC
CATGTAGATGTTCGGACCCAGGCAATGTTTCAGTTGATGGAGCCAGGTTTTGTGGGTCTG
ATATTCTCTTGTTTTAGCGAAGATGCTCAAAAGGTTGGAAAAATCCAAGTGATTGCTTTT
CAGTCACTTGGTGGAAATCAGCAATCTGTTGTTCCTGTTAATGATCCAGTCATTAACCTT
GAATCATCTTGGAGTTCGTTGGATGATACCTCACATCCGGCATTGATTGAAGGCATTGAA
CAAGACACGGGGGATTCTAAATCTTCAAGAAATAGCAAGGTGTGGGCAAAATCTTCTGAT
GTGGATTTCTATCCTCATTTTGACGCCAATCACTCAGCAAAACATCAATCCAAAGAAAAT
GCTATAGTTGCATACGATCCCAATAATGCACCTGAGACCCCTGTTGATCTAGATGAATCA
GATATGACCCCAAGCATCCAGGAGGCGTTGCACAGGTCAAACATGGACATTAGTGGTGCA
GAATATGTAAGAAAGGAGGTGCCACTTTATGTATTTCCGACCAGGCATCTGCTAAAGCTG
GACACCACATTAACTTCTTACTGTGATATGCAACATGTCGTTTTCGAAGAGGAAAAATCA
GCATATAATCAAGCCATGCATCAAAATATTCGTGATGGGAAGATCCACCCACTTACATCT
ATTCACCATGCATCTACATACAACTCATCTCTCTGCAAATTAATGGAATATTGTTTGAGC
CCTGCTATAACTGTACTTCAGGATCGTCTGAAGGAAAATGAACTTCGGTTATCTATGCTA
ATGGAGGAGGCTAAACAACTTGAGGCAGAGAACCAGAGCATGAGAAATGATTCTCCTCGT
CGCTTGATGTATCATGGGACTAGTGGCACCAGTTCTCTGATGGCACAGGATAAGCAAATG
AGCCCCAGAAGTCCTAGCGGCACCGGCCGGAGAAAGGCTTCCTGATTTCAATCTTGTTCA
CTTGACATGGTGAATATCGTGAGCTGCGGTTCCACCCCTTGCTATCTGCAATCCCCATTT
TTCCGGTGTATGAAGGTGTGTACAGTGGCTTTGTACATACCTCAACTCCTCAGCACCAGT
GCTGTTGTAAAAGTTACTGCGGCCTCCCTTGGCTTTGTACTGCTGTTCCTCGCGCTGCTG
CTTAATTTGCGCCAAATCCCTTTCCCTTCCGAGGGCTTATTCCATGAGCTTGTAGTTTGT
GCTGGGGTGGTTGCTTTCTTTGAGCTATTGCTAATTAAGATGCAATGCATTTCCCGTGCA
GGCAAAGACGAAGCTTGTTTTTGCTTTGCTGTTGGAACAGATCATGTACTATTACCAATC
CAAAAGCTGAAATGCTCAGGCACACTTGCTGCCAAAGTGTC