Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0541400-00
CDS Infomation

cds chromosome:IRGSP-1.0:5:26879818:26881142:1 gene:Os05g0541400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:late flowering, basic helix-loop-helix protein 119 description:Helix-loop-helix DNA-binding domain containing protein. (Os05t0541400-00)
Sequence

ATGTACATGGACGCCTTCGGGTGGAGCGCGCCAGCCGCGCCGTGCCAGCCGAGCTGCGGC
CCCGGCGGCGACGACGACGACGACGTCCTCCTCGCCGCCGTCTTGGGCGCGAGCTTCGAG
CTCCACTCCCTCGTCGACGGCGGCGGCAACGGCGCCGCCGGCGCCGTTCGCTCTGACGAT
GCCTACGGCCTCGACGTCGACCTGCCGTCCCACCAGATGAGCCTCCTGCGTTGCCAAGAT
GGTCTGAGTGCTCTTCACGGCGACGCGTCCCCGACGGCGGCGGCGGCGGCGTTCCTTGAC
TCGGTGGATGTGTTGCCAGTGCCGGCCATCGCCGGCGCGACGCACGACGACGGCGGGCTC
CTCGATAGGTTCGCGTTCCCGAACGTTGCCGAGACGACGACCGTGCAAGCCGCCGCGTCG
AACACCGCCTTCTCCGGATACAGCAGCAACACCACCGGCGGCGGCAACATCTCCTCCGGC
GAGTCGAACACCTACACGGAGGTGGCGTCGACGCCGTGCGCCGTGTCGACGACGACGACG
ACGACGGCTCTGCCCCCGTCGAAGCGGAAGCTACCAGAGAAGTACCCCGTCGTAGGCACA
TCACCAACGACGAAGACCACGACGACGTCGGAGACAGCCGCAGAGCGCCGGAGCACCAAG
AGAGGGGCCGGGGGCAGCAGCAGCATCACGTTCGGCGGCGGCTGCCACGGCGCCGGTGCG
GCGGCGGCGCTGCTCGGCTACGGCCGCGGGTACGAGCCGGACACGGAGGCGATAGCGCAG
GTGAAGGAGATGATCTACCGCGCGGCGGCGATGCGCCCGGTCACCCTCGGCGGCCCCGCC
TCCGCCTCCGACCCGTCATCCCGGCCGCCGCCGCCGCCCCAGCGGCCGCGGCGCAAGAAC
GTGCGCATCTCCAGCGACCCGCAGACGGTGGCGGCGCGGCTGCGGCGGGAGCGGGTGAGC
GAGCGCCTGCGCGTGCTGCAGCGGCTGGTCCCCGGCGGCAGCAAGATGGACACGGCCACC
ATGCTCGACGAGGCCGCCAGCTACCTCAAGTTCCTCAAGTCGCAGCTCGAGGCGCTGGAA
ACCCTAGGGAATGGCAATGGCAACGGCAACCTGTTGCACCATGGCTACTACACTGGATCA
AGAAATGCTACTGCTACTGCTGCTACTGGTTCTAGCAATAGCACTGTACTTGCATTTGGG
CGAGATGGACTTGCTGGCTTTGTGAAATCCAATAGGAATTTGCAATTGTAG

Peptide Sequence

PEP ID

Os05t0541400-00
PEP Infomation

pep chromosome:IRGSP-1.0:5:26879818:26881142:1 gene:Os05g0541400 transcript:Os05t0541400-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:late flowering, basic helix-loop-helix protein 119 description:Helix-loop-helix DNA-binding domain containing protein. (Os05t0541400-00)
Sequence

MYMDAFGWSAPAAPCQPSCGPGGDDDDDVLLAAVLGASFELHSLVDGGGNGAAGAVRSDD
AYGLDVDLPSHQMSLLRCQDGLSALHGDASPTAAAAAFLDSVDVLPVPAIAGATHDDGGL
LDRFAFPNVAETTTVQAAASNTAFSGYSSNTTGGGNISSGESNTYTEVASTPCAVSTTTT
TTALPPSKRKLPEKYPVVGTSPTTKTTTTSETAAERRSTKRGAGGSSSITFGGGCHGAGA
AAALLGYGRGYEPDTEAIAQVKEMIYRAAAMRPVTLGGPASASDPSSRPPPPPQRPRRKN
VRISSDPQTVAARLRRERVSERLRVLQRLVPGGSKMDTATMLDEAASYLKFLKSQLEALE
TLGNGNGNGNLLHHGYYTGSRNATATAATGSSNSTVLAFGRDGLAGFVKSNRNLQL

Transcript Sequence

Transcript ID

Os05t0541400-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:26879818:26881142:1 gene:Os05g0541400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:late flowering, basic helix-loop-helix protein 119 description:Helix-loop-helix DNA-binding domain containing protein. (Os05t0541400-00)
Sequence

TGGTAGTAGCAGCAGATAGCTACAGGCGAGTTTAGCTAGCCAATTTGGAAGCCTCGCCGG
CGGCGACCGCGTCATGTACATGGACGCCTTCGGGTGGAGCGCGCCAGCCGCGCCGTGCCA
GCCGAGCTGCGGCCCCGGCGGCGACGACGACGACGACGTCCTCCTCGCCGCCGTCTTGGG
CGCGAGCTTCGAGCTCCACTCCCTCGTCGACGGCGGCGGCAACGGCGCCGCCGGCGCCGT
TCGCTCTGACGATGCCTACGGCCTCGACGTCGACCTGCCGTCCCACCAGATGAGCCTCCT
GCGTTGCCAAGATGGTCTGAGTGCTCTTCACGGCGACGCGTCCCCGACGGCGGCGGCGGC
GGCGTTCCTTGACTCGGTGGATGTGTTGCCAGTGCCGGCCATCGCCGGCGCGACGCACGA
CGACGGCGGGCTCCTCGATAGGTTCGCGTTCCCGAACGTTGCCGAGACGACGACCGTGCA
AGCCGCCGCGTCGAACACCGCCTTCTCCGGATACAGCAGCAACACCACCGGCGGCGGCAA
CATCTCCTCCGGCGAGTCGAACACCTACACGGAGGTGGCGTCGACGCCGTGCGCCGTGTC
GACGACGACGACGACGACGGCTCTGCCCCCGTCGAAGCGGAAGCTACCAGAGAAGTACCC
CGTCGTAGGCACATCACCAACGACGAAGACCACGACGACGTCGGAGACAGCCGCAGAGCG
CCGGAGCACCAAGAGAGGGGCCGGGGGCAGCAGCAGCATCACGTTCGGCGGCGGCTGCCA
CGGCGCCGGTGCGGCGGCGGCGCTGCTCGGCTACGGCCGCGGGTACGAGCCGGACACGGA
GGCGATAGCGCAGGTGAAGGAGATGATCTACCGCGCGGCGGCGATGCGCCCGGTCACCCT
CGGCGGCCCCGCCTCCGCCTCCGACCCGTCATCCCGGCCGCCGCCGCCGCCCCAGCGGCC
GCGGCGCAAGAACGTGCGCATCTCCAGCGACCCGCAGACGGTGGCGGCGCGGCTGCGGCG
GGAGCGGGTGAGCGAGCGCCTGCGCGTGCTGCAGCGGCTGGTCCCCGGCGGCAGCAAGAT
GGACACGGCCACCATGCTCGACGAGGCCGCCAGCTACCTCAAGTTCCTCAAGTCGCAGCT
CGAGGCGCTGGAAACCCTAGGGAATGGCAATGGCAACGGCAACCTGTTGCACCATGGCTA
CTACACTGGATCAAGAAATGCTACTGCTACTGCTGCTACTGGTTCTAGCAATAGCACTGT
ACTTGCATTTGGGCGAGATGGACTTGCTGGCTTTGTGAAATCCAATAGGAATTTGCAATT
GTAGT