Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0540900-01
CDS Infomation

cds chromosome:IRGSP-1.0:5:26858393:26859779:-1 gene:Os05g0540900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os05t0540900-01)
Sequence

ATGGACGTGGCGGAGGCGGCGTCGCCGGGGGTGGGCGCGTGGGCGGCGATCCGCGGGTAC
TTCACGCCGGCGACGCTGTTCCTCGTCGTGAACATCGTCATCGGCACCATCGCGCTCACC
TCCCGCACGCACCAGCGCCGCCGGCGGCAGGTGTACCAGTATCACCACGACGGGGAGATA
CTCCACCACGACCAGTTGCAACCGCCGCCGCCGCTGCTGCATCAGCAATACTACGGCGGC
GGTGAGCACCAGCAGATGATGATGCAGGAGACGCTGTATGCTCCGCCGCCGGCGCCGGCG
CCGCTCGCGCGGACGTCGTCCGTTCTTGACCGGCTCCGCTCGTTCGGACTCTACCGCTTC
CGCTCCGGTGACTTCCCTCCCGAGTACGCTACTGCTGCGGCGGCGGCGACGAGCCAACTC
CACCACCAGCGCACGGAGGAGGTGGTGTCTTCGTCTCCGGTGGATGAGGTGAAGCTGCAA
GGGCACTACGCGAGGAGCCGGTCGGAGCCGGCGGCGGCGCCGGCGCAGGAGGAGAGGAAG
GCGGCGTCGAGGCTGAGGAACTCGAGCTCCGAGGTGAGGAGGGCAGAGGTCGTGAGGGCT
CCGGCGAGGGTGGTCGAGGCGTTCCCGGAGGAGGCCGCGGCCGCCGTGGACGCGACGGCC
GAAGACGATTTCACACCGAAGCAGCAGCGAGATCTGCCGCTCCAGCAAGAATACGTTCCT
CCCCCGGCGCCGGCGCCGGCGCCGCTCGCGCGCACGTCGTCCGTCCTGGACCGCCTCCGC
TCGTTCACCCTCTACAGCTTCCGCTCCGGCGACCTCGCCACCGACGACATCCCCGCCGAC
GCAGCGGCGGCGGCAACGCCCGCACAAGCGCACTACGGTAGGACCCGGTCGGAGCCGGCG
CGGGAGCAGGACAAGAAGGCGAAGAAGCAGGCGGCGTCGGAGGCGAAGACGATGACCAAG
TCGAGCTCGGAGGCGAGGAAGGACACGGCGGCGGAGGACGCCGACGACGGCGGCGTGGAC
GCCAGAGCCGACGACTTCATCAACAAATTCAGGCAGCAACTGCAGCTTCAGAGGCTCAAC
TCGCTGCTCAACTACAAGGAGATGCTCAACCGCGGCAGCAGCAAGCAGTAG

Peptide Sequence

PEP ID

Os05t0540900-01
PEP Infomation

pep chromosome:IRGSP-1.0:5:26858393:26859779:-1 gene:Os05g0540900 transcript:Os05t0540900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os05t0540900-01)
Sequence

MDVAEAASPGVGAWAAIRGYFTPATLFLVVNIVIGTIALTSRTHQRRRRQVYQYHHDGEI
LHHDQLQPPPPLLHQQYYGGGEHQQMMMQETLYAPPPAPAPLARTSSVLDRLRSFGLYRF
RSGDFPPEYATAAAAATSQLHHQRTEEVVSSSPVDEVKLQGHYARSRSEPAAAPAQEERK
AASRLRNSSSEVRRAEVVRAPARVVEAFPEEAAAAVDATAEDDFTPKQQRDLPLQQEYVP
PPAPAPAPLARTSSVLDRLRSFTLYSFRSGDLATDDIPADAAAAATPAQAHYGRTRSEPA
REQDKKAKKQAASEAKTMTKSSSEARKDTAAEDADDGGVDARADDFINKFRQQLQLQRLN
SLLNYKEMLNRGSSKQ

Transcript Sequence

Transcript ID

Os05t0540900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:26858393:26859779:-1 gene:Os05g0540900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os05t0540900-01)
Sequence

AATCCCCACCTGTACACCACAGCCGCTCACCGAGCTCTCGCCCGCGTCGTCCGTTTCCGC
GCTTTCCCCTGCTAGCCTCCGCGTGATAGATGGACGTGGCGGAGGCGGCGTCGCCGGGGG
TGGGCGCGTGGGCGGCGATCCGCGGGTACTTCACGCCGGCGACGCTGTTCCTCGTCGTGA
ACATCGTCATCGGCACCATCGCGCTCACCTCCCGCACGCACCAGCGCCGCCGGCGGCAGG
TGTACCAGTATCACCACGACGGGGAGATACTCCACCACGACCAGTTGCAACCGCCGCCGC
CGCTGCTGCATCAGCAATACTACGGCGGCGGTGAGCACCAGCAGATGATGATGCAGGAGA
CGCTGTATGCTCCGCCGCCGGCGCCGGCGCCGCTCGCGCGGACGTCGTCCGTTCTTGACC
GGCTCCGCTCGTTCGGACTCTACCGCTTCCGCTCCGGTGACTTCCCTCCCGAGTACGCTA
CTGCTGCGGCGGCGGCGACGAGCCAACTCCACCACCAGCGCACGGAGGAGGTGGTGTCTT
CGTCTCCGGTGGATGAGGTGAAGCTGCAAGGGCACTACGCGAGGAGCCGGTCGGAGCCGG
CGGCGGCGCCGGCGCAGGAGGAGAGGAAGGCGGCGTCGAGGCTGAGGAACTCGAGCTCCG
AGGTGAGGAGGGCAGAGGTCGTGAGGGCTCCGGCGAGGGTGGTCGAGGCGTTCCCGGAGG
AGGCCGCGGCCGCCGTGGACGCGACGGCCGAAGACGATTTCACACCGAAGCAGCAGCGAG
ATCTGCCGCTCCAGCAAGAATACGTTCCTCCCCCGGCGCCGGCGCCGGCGCCGCTCGCGC
GCACGTCGTCCGTCCTGGACCGCCTCCGCTCGTTCACCCTCTACAGCTTCCGCTCCGGCG
ACCTCGCCACCGACGACATCCCCGCCGACGCAGCGGCGGCGGCAACGCCCGCACAAGCGC
ACTACGGTAGGACCCGGTCGGAGCCGGCGCGGGAGCAGGACAAGAAGGCGAAGAAGCAGG
CGGCGTCGGAGGCGAAGACGATGACCAAGTCGAGCTCGGAGGCGAGGAAGGACACGGCGG
CGGAGGACGCCGACGACGGCGGCGTGGACGCCAGAGCCGACGACTTCATCAACAAATTCA
GGCAGCAACTGCAGCTTCAGAGGCTCAACTCGCTGCTCAACTACAAGGAGATGCTCAACC
GCGGCAGCAGCAAGCAGTAGCTAGCCACACTCGCCAAGAACAACAAGAGCCTTGCAATTT
CACAGCAAGCTCACTAAGCTCCCTGTTAATTATACTACTTAGCAATGCTAAATCAATCAA
GAGATTTCTTATATATGTGGTGTTAATGAATTAAACTGTGAAATAGTTGCAAGATTTTTG
CCTTAAC