Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0540300-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:26835675:26840306:-1 gene:Os05g0540300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Chaperonin CPN60-2, mitochondrial precursor (HSP60-2). (Os05t0540300-01)
Sequence	ATGTACCGGGCGGCGGCGGCGGCGGCGTCGTCGATTTCGAGGTCCTCGTCGGCGCTGCGG AAGCAGCTGTCGCGCGGCGGTTGCGGGGAGCAGCGGCTGTGGGCGCGGGGGTATGCGGCG AAGGAGGTGGCGTTCGGCGTCGGAGCCCGGGCCGCCTTGCTGCAGGGCGTGAACGACCTC GCCGACGCCGTCAAGGTCACCATGGGCCCCAAGGGGCGCAATGTGATTATCGAGAGATCC CATAGAGCTCCCAAAGTCACAAAGGATGGAGTCACGGTTGCAAAAAGCATTGAGTTTGAG GACAGTGCTAAGAATGTTGGTGCAAACCTGGTGAAGCAAGTTGCTGAAGCTACTAATAAG GTCGCAGGAGATGGTACCACTTGTGCAACTGTACTTACACAGGCTATTCTTACGGAAGGC TGCAAGGCTGTGGCAGCAGGGGTCAATGTTATGGACTTACGTAATGGCATAAACAAGGCC ATAAGTTCTATCACTACACACCTCAAAAGTAAAGCATGGATTATCAACTCCTCAGAAGAA ATAAATCAGGTAGCAACTATTTCTGCAAATGGAGAAAAGGAAATAGGAGATTTGATATCA AAGGCGATGGAAAAGGTTGGAAAGGATGGAGTTATTACTATTACTGATGGCAAGACATTA GACAATGAGCTTGAAGCGGTACAGGGAATGAAACTTTCCAGAGGCTACATATCTCCTTAC TTTGTGACTGATCAGAAGACTCAGAAGTGTGAGATGGAAAATCCTCTTATTCTAATTCAT GACAAGAAAATCTCAACGATGAATTCACTTCTTCCAGTTTTAGAAATGTCTATCAAGAAT CGTAGGCCTCTTCTCATCATTGCTGAGGATGTTGAGGGAGAAGCTCTATCAATGCTTGTT CTGAACAAGCATCGTGCTGGATTAAAGATATGTGCTGTCAAAGCTCCTGGATTTGGTGAA AACAGAAGAGCCAATCTGGATGACGTGGCTGTGTTGACAGGAGGAGAGGTTGTCAGCGAG GACCAAGGTCTTGATCTTGGTAAAGTCGAACTACAAATGCTTGGCACTGCTAAAAAGGTT ACTGTATCCCTTGATGATACTATCATTCTAGATGGTGGAGGCGACAAACAGCAGATAGAG GAGAGGTGTCAACAGCTTAGAGAATCAATGGACAAAAGCACTGCTGTATTTGACAAAGAA AAGGCTCAAGAACGTCTATCAAAGTTATCTGGTGGTGTTGCTGTCCTCAAGATTGGGGGA GCTAGTGAAGTTGAAGTTGGTGAGAAAAAAGATAGGGTAACAGACGCTTTACATGCAGCA AGGGCTGCTGTGGAGGAGGGCATTGTACCAGGTGGTGGAGTTGCCCTTCTGTATGCCACC AAGGAGCTTGACAAGATTATCACAGCAAATGAGGATGAAAAGATTGGAGTTCAAATTATC AAGAATGCTTTGAAGGCTCCTTTGATGACTATAGCTGCAAATGCTGGCATTGATGGTGGT GTGGTCATTGGGAAGCTAATTGAACAAGATAATCTTAATATGGGCTATGATGCAGCAAGA GGGGAGTATGTTGACATGATTAAGGCTGGGATCATCGACCCTGTGAAAGTCATCCGAACA GCGCTACAAGATGCATCAAGTGTTTCTTTGCTGATGACAACGACAGAGGCAGCTGTTGCT GAGCCCCCAGCAGCAAAGGCCAGAATGGCTAGTCGGATGCCGCAGATGAGCGGGATGGAT TTTTGA

Peptide Sequence

PEP ID	Os05t0540300-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:26835675:26840306:-1 gene:Os05g0540300 transcript:Os05t0540300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Chaperonin CPN60-2, mitochondrial precursor (HSP60-2). (Os05t0540300-01)
Sequence	MYRAAAAAASSISRSSSALRKQLSRGGCGEQRLWARGYAAKEVAFGVGARAALLQGVNDL ADAVKVTMGPKGRNVIIERSHRAPKVTKDGVTVAKSIEFEDSAKNVGANLVKQVAEATNK VAGDGTTCATVLTQAILTEGCKAVAAGVNVMDLRNGINKAISSITTHLKSKAWIINSSEE INQVATISANGEKEIGDLISKAMEKVGKDGVITITDGKTLDNELEAVQGMKLSRGYISPY FVTDQKTQKCEMENPLILIHDKKISTMNSLLPVLEMSIKNRRPLLIIAEDVEGEALSMLV LNKHRAGLKICAVKAPGFGENRRANLDDVAVLTGGEVVSEDQGLDLGKVELQMLGTAKKV TVSLDDTIILDGGGDKQQIEERCQQLRESMDKSTAVFDKEKAQERLSKLSGGVAVLKIGG ASEVEVGEKKDRVTDALHAARAAVEEGIVPGGGVALLYATKELDKIITANEDEKIGVQII KNALKAPLMTIAANAGIDGGVVIGKLIEQDNLNMGYDAARGEYVDMIKAGIIDPVKVIRT ALQDASSVSLLMTTTEAAVAEPPAAKARMASRMPQMSGMDF

Transcript Sequence

Transcript ID	Os05t0540300-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:26835675:26840306:-1 gene:Os05g0540300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Chaperonin CPN60-2, mitochondrial precursor (HSP60-2). (Os05t0540300-01)
Sequence	ATTGCGAAGCCGCAAGCAAAGCCGCCGGAGGAAGGAGCAATCGCGAGTACTCGCCACCAT GTACCGGGCGGCGGCGGCGGCGGCGTCGTCGATTTCGAGGTCCTCGTCGGCGCTGCGGAA GCAGCTGTCGCGCGGCGGTTGCGGGGAGCAGCGGCTGTGGGCGCGGGGGTATGCGGCGAA GGAGGTGGCGTTCGGCGTCGGAGCCCGGGCCGCCTTGCTGCAGGGCGTGAACGACCTCGC CGACGCCGTCAAGGTCACCATGGGCCCCAAGGGGCGCAATGTGATTATCGAGAGATCCCA TAGAGCTCCCAAAGTCACAAAGGATGGAGTCACGGTTGCAAAAAGCATTGAGTTTGAGGA CAGTGCTAAGAATGTTGGTGCAAACCTGGTGAAGCAAGTTGCTGAAGCTACTAATAAGGT CGCAGGAGATGGTACCACTTGTGCAACTGTACTTACACAGGCTATTCTTACGGAAGGCTG CAAGGCTGTGGCAGCAGGGGTCAATGTTATGGACTTACGTAATGGCATAAACAAGGCCAT AAGTTCTATCACTACACACCTCAAAAGTAAAGCATGGATTATCAACTCCTCAGAAGAAAT AAATCAGGTAGCAACTATTTCTGCAAATGGAGAAAAGGAAATAGGAGATTTGATATCAAA GGCGATGGAAAAGGTTGGAAAGGATGGAGTTATTACTATTACTGATGGCAAGACATTAGA CAATGAGCTTGAAGCGGTACAGGGAATGAAACTTTCCAGAGGCTACATATCTCCTTACTT TGTGACTGATCAGAAGACTCAGAAGTGTGAGATGGAAAATCCTCTTATTCTAATTCATGA CAAGAAAATCTCAACGATGAATTCACTTCTTCCAGTTTTAGAAATGTCTATCAAGAATCG TAGGCCTCTTCTCATCATTGCTGAGGATGTTGAGGGAGAAGCTCTATCAATGCTTGTTCT GAACAAGCATCGTGCTGGATTAAAGATATGTGCTGTCAAAGCTCCTGGATTTGGTGAAAA CAGAAGAGCCAATCTGGATGACGTGGCTGTGTTGACAGGAGGAGAGGTTGTCAGCGAGGA CCAAGGTCTTGATCTTGGTAAAGTCGAACTACAAATGCTTGGCACTGCTAAAAAGGTTAC TGTATCCCTTGATGATACTATCATTCTAGATGGTGGAGGCGACAAACAGCAGATAGAGGA GAGGTGTCAACAGCTTAGAGAATCAATGGACAAAAGCACTGCTGTATTTGACAAAGAAAA GGCTCAAGAACGTCTATCAAAGTTATCTGGTGGTGTTGCTGTCCTCAAGATTGGGGGAGC TAGTGAAGTTGAAGTTGGTGAGAAAAAAGATAGGGTAACAGACGCTTTACATGCAGCAAG GGCTGCTGTGGAGGAGGGCATTGTACCAGGTGGTGGAGTTGCCCTTCTGTATGCCACCAA GGAGCTTGACAAGATTATCACAGCAAATGAGGATGAAAAGATTGGAGTTCAAATTATCAA GAATGCTTTGAAGGCTCCTTTGATGACTATAGCTGCAAATGCTGGCATTGATGGTGGTGT GGTCATTGGGAAGCTAATTGAACAAGATAATCTTAATATGGGCTATGATGCAGCAAGAGG GGAGTATGTTGACATGATTAAGGCTGGGATCATCGACCCTGTGAAAGTCATCCGAACAGC GCTACAAGATGCATCAAGTGTTTCTTTGCTGATGACAACGACAGAGGCAGCTGTTGCTGA GCCCCCAGCAGCAAAGGCCAGAATGGCTAGTCGGATGCCGCAGATGAGCGGGATGGATTT TTGAGAGCAAGTAACATGATTTATGATATGTCTTCTCCTGATGTAAGGCAGTGCCCCTCA AATGAAAGGGGTGATTTTTTGAAAGCTATATGACGTGATTTTGTCTTTTCGTGGTGAAAG GCAGTAGTAGTACTTAATATTTCTACAGAATTTCACGGCCCGGGAGAAAGACGTTACAGA TATAATTTATTTTAAACTTGGGAATTGGGAATCCGTCTGATGTAAACTGAACTAATGTGG AGCAGCACCTCATTTTGTAGATTACTACATATGTGAAATTGATACTGTGAAAGCTGCAAT ATTTTACTATGCATTTTGGCAATAATTTTGCCTGCGC