Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0534900-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:26560937:26566558:1 gene:Os05g0534900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os05t0534900-01)
Sequence	ATGTCCCGGTCTCTCCCTCTGCTACTCCTCCATTCCGCGCTCGTCTCCAAGCCCGCACCA TCTAGGCTCCTCTCTTCCTCCTCCTCCTCCGCCGCCGCCGCCGCCATCGCCGCGGCCTCT TCTGGTGCCCGAGTCGGCGGGGGGCATGGGATCGTCTCCGCGGTGCTGGAGATCGTGGGC CCCATCGAGCTCCTCTTCCCGTCCTCCGAGGCGCGCCTCTACGTGCGCCTCCTGCGGCGC TGCGCGCGCGACGCTCTCGCCGCGGGCGCGGGCGCCGTCCACGGGCACGTCCTCAAGCGC GGCTTCGCATCCGTGTCGCTCGTGTCCAACGTCCTGATGGACACTTATGCCAAAGGCGGT CTCATGGCTGCCTGTCGCCACCTGTTCGACGAAATGCCGAACAAGGACATCGTGTCATGG TGTACCGTCATCGCGGCGCACGCCAGCCGCGGGCACTGCTTCGAGGCCATTGGGCTGTTC AAGGAACTCCTGTCTTCTGAGGTGAAGCCAAATCGGTTCGTCATCTCATCGGTGCTGAAC GCCTGTGCTCGGTCTGGTGTCATAGAACAGGGGCTCATGGTTCATGGAATGGTGGTCAAG TCTGGATTGGGTGCTGATAGGTTTGTGGAGGTTGGATTCGTTGATATGTATGCGAAATGT GGCAATGTTGGCTATTCATTCAGGATGTTCAATGGAATTCCGGTGAAGAGCTCAGTTGCT TGGAATGCAATGATTTCAGGTTTTGTTGAGAATAACTGTTTCATGGATGCCGTGGAGCTT TGTCAGGATATGCATCGAGTTGGCATGGCAATGGATGTGGTGACATTGAGGGTAGTTGCT AGCGTCGCTGCTATTCTGGGAGCATTTGAGCTTTCTAGGAACATTCATGTTTATGCACTT AAAGCGGGGTTGGGAAGAGACTGTTTTGTTGTGTCTGAACTGATCAAGTCAGCTGGGAAG GCAGGTGAGACTCAGTACATCAAAAAGCTTGTTCCTGCAGTTAGAAGGCATGATGCGTCT TTGTATTCTTTGGCAATCTCAGGTTATCACTCAAATGGTTGTCAGGGTGAAGCTGTGAAA CTCGCAGAGGTTCTTCTTTATTCGGGTCTCAATTTAAGGGAAGGGGATTTGGTTACTGTG ATAAATATCTGTCAGACCAAAGAGGAAGTTCAACAGATGCATGCTTATACTTTCAGAACT GGGGATTTATCTTATACTAATGTTTGCAATTCTCTTATATCGATATACTCTGAAATTGGA TCGTTGATTCACGCGGAATCAATCTTTAAAACTATGCAATCCCGAGATGTCATATCATGG ACTGCAGTCATGGCAGGCTGTGTCAAGAACCTACAATATGAAAGAGCATTTGGTTATTTT TTAGAGTTAAGAAACTCTGGAGAACCATTAGATCAGCACTGTGTTGCTAATCTAATAAAT GCCTGTACAGGACTTGAAGACATGTACAAGGGAAAGCAGATTCACTCTTTAGCTCTTAAA CTTGGGCTACTTGTTGATTTCATCAGTGCATCCCTAGTAAACATGTATGCAAAATGCCAT CACATTGAGTGGGCTTCTCAGTTATTCTCTAGCACATTATTTCCACGAAATCTAGTGATA ATCAATGCCATGATCTCTGGATATTGCTGGAATTCACTGCCACAGAAAGCTCTTCTACTC TTCTGCAGAGAATATCGTTCTGGTCTGCGTCCTGATCATTTCACCTTCTCAACTGTTCTT GGGGCATGTGCTGATATAGGAGCAAAGGAGGCTGGTGAGCAAATCCATGGCCATCTTGTG AAGATTGGTTCTGAATACTTGGATGTTGTTGTTGGAAACTCTATCATAAACTTTTATGTC AAGTGTGGGTGCATTGCTAATGCTTGTAGGTTTTTCCATAGCATGAGGAGTCGAAACATC AATTCATATGCAATGTTGATGTTGGGTTATATTCAAAATAGATGCAGTGATGAAGCTCTT CAATTTTTCTCCATGATGCAACAGAGTGGGTTGCGTGCAAACCGTGTTACCTTTGCAAGA ATCTTGAGGGGGTGTGCTGATCTTTGTGCTATTCATTTGGGAAGGCAACTGCATGCTTCC ATTATAAAAATGGGCCTGATTTCTGATGTATATGTGGCAAATGCACTTGTAGGAATGTAT AAAAAATCTGAAGGTTGGGTGGAATCAAAAAGAAATTCTAAAGAAACTTTGGCTCCAGAA CAGGATGCCGAAGATAATTGCTATTCAGAACAAAGAGATATAAGAAGCACACTTGAAGAA ATTGGATTATTCACATTGGAAGAAGAGAAAGACAAAGAAACTTTTGCTGATGAGCGGAAG GTCTACACTAGTGCTGCTTCTGTGTTTGGACGTGATCTTAGGACCGATTCTATCATTGGG AATTGGAAGAATGGCAGGTGCAATGAAAGCGGGCATTTGCTAAATTACAAGAGTGCAGAA TATCAGGAAATTGGAGGTGAACCTTTTAAGTTGTTTGCATTGTTACAGGAGGATAGCAGA AGATCTGACAAATTTGTCCTGCTGGTCATCACTGATAATAGTCACTTAAAGACGAAGGGT GCAGGTTTTATTAATGCAGAACTAGCGAGACGACCTGGTTTTGCACCAGCACTTGACTTT CCTCCTTGA

Peptide Sequence

PEP ID	Os05t0534900-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:26560937:26566558:1 gene:Os05g0534900 transcript:Os05t0534900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os05t0534900-01)
Sequence	MSRSLPLLLLHSALVSKPAPSRLLSSSSSSAAAAAIAAASSGARVGGGHGIVSAVLEIVG PIELLFPSSEARLYVRLLRRCARDALAAGAGAVHGHVLKRGFASVSLVSNVLMDTYAKGG LMAACRHLFDEMPNKDIVSWCTVIAAHASRGHCFEAIGLFKELLSSEVKPNRFVISSVLN ACARSGVIEQGLMVHGMVVKSGLGADRFVEVGFVDMYAKCGNVGYSFRMFNGIPVKSSVA WNAMISGFVENNCFMDAVELCQDMHRVGMAMDVVTLRVVASVAAILGAFELSRNIHVYAL KAGLGRDCFVVSELIKSAGKAGETQYIKKLVPAVRRHDASLYSLAISGYHSNGCQGEAVK LAEVLLYSGLNLREGDLVTVINICQTKEEVQQMHAYTFRTGDLSYTNVCNSLISIYSEIG SLIHAESIFKTMQSRDVISWTAVMAGCVKNLQYERAFGYFLELRNSGEPLDQHCVANLIN ACTGLEDMYKGKQIHSLALKLGLLVDFISASLVNMYAKCHHIEWASQLFSSTLFPRNLVI INAMISGYCWNSLPQKALLLFCREYRSGLRPDHFTFSTVLGACADIGAKEAGEQIHGHLV KIGSEYLDVVVGNSIINFYVKCGCIANACRFFHSMRSRNINSYAMLMLGYIQNRCSDEAL QFFSMMQQSGLRANRVTFARILRGCADLCAIHLGRQLHASIIKMGLISDVYVANALVGMY KKSEGWVESKRNSKETLAPEQDAEDNCYSEQRDIRSTLEEIGLFTLEEEKDKETFADERK VYTSAASVFGRDLRTDSIIGNWKNGRCNESGHLLNYKSAEYQEIGGEPFKLFALLQEDSR RSDKFVLLVITDNSHLKTKGAGFINAELARRPGFAPALDFPP

Transcript Sequence

Transcript ID	Os05t0534900-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:26560937:26566558:1 gene:Os05g0534900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os05t0534900-01)
Sequence	AGCGAATCTGGGGACTTTTGGGAGTGGTGTCTCTGACGAAGGTGGGCCCACATCTCTAGG CTCCAAACCCCTCTCGCCGCCGGCGACTATGCCCGTGGCGATCCCGTCCTCCTCCACCGC CGCCGCCGCCGCTGTCGCCCATCTCCGGCGACGCATCCACCGCCTCTCTTATGTCCCGGT CTCTCCCTCTGCTACTCCTCCATTCCGCGCTCGTCTCCAAGCCCGCACCATCTAGGCTCC TCTCTTCCTCCTCCTCCTCCGCCGCCGCCGCCGCCATCGCCGCGGCCTCTTCTGGTGCCC GAGTCGGCGGGGGGCATGGGATCGTCTCCGCGGTGCTGGAGATCGTGGGCCCCATCGAGC TCCTCTTCCCGTCCTCCGAGGCGCGCCTCTACGTGCGCCTCCTGCGGCGCTGCGCGCGCG ACGCTCTCGCCGCGGGCGCGGGCGCCGTCCACGGGCACGTCCTCAAGCGCGGCTTCGCAT CCGTGTCGCTCGTGTCCAACGTCCTGATGGACACTTATGCCAAAGGCGGTCTCATGGCTG CCTGTCGCCACCTGTTCGACGAAATGCCGAACAAGGACATCGTGTCATGGTGTACCGTCA TCGCGGCGCACGCCAGCCGCGGGCACTGCTTCGAGGCCATTGGGCTGTTCAAGGAACTCC TGTCTTCTGAGGTGAAGCCAAATCGGTTCGTCATCTCATCGGTGCTGAACGCCTGTGCTC GGTCTGGTGTCATAGAACAGGGGCTCATGGTTCATGGAATGGTGGTCAAGTCTGGATTGG GTGCTGATAGGTTTGTGGAGGTTGGATTCGTTGATATGTATGCGAAATGTGGCAATGTTG GCTATTCATTCAGGATGTTCAATGGAATTCCGGTGAAGAGCTCAGTTGCTTGGAATGCAA TGATTTCAGGTTTTGTTGAGAATAACTGTTTCATGGATGCCGTGGAGCTTTGTCAGGATA TGCATCGAGTTGGCATGGCAATGGATGTGGTGACATTGAGGGTAGTTGCTAGCGTCGCTG CTATTCTGGGAGCATTTGAGCTTTCTAGGAACATTCATGTTTATGCACTTAAAGCGGGGT TGGGAAGAGACTGTTTTGTTGTGTCTGAACTGATCAAGTCAGCTGGGAAGGCAGGTGAGA CTCAGTACATCAAAAAGCTTGTTCCTGCAGTTAGAAGGCATGATGCGTCTTTGTATTCTT TGGCAATCTCAGGTTATCACTCAAATGGTTGTCAGGGTGAAGCTGTGAAACTCGCAGAGG TTCTTCTTTATTCGGGTCTCAATTTAAGGGAAGGGGATTTGGTTACTGTGATAAATATCT GTCAGACCAAAGAGGAAGTTCAACAGATGCATGCTTATACTTTCAGAACTGGGGATTTAT CTTATACTAATGTTTGCAATTCTCTTATATCGATATACTCTGAAATTGGATCGTTGATTC ACGCGGAATCAATCTTTAAAACTATGCAATCCCGAGATGTCATATCATGGACTGCAGTCA TGGCAGGCTGTGTCAAGAACCTACAATATGAAAGAGCATTTGGTTATTTTTTAGAGTTAA GAAACTCTGGAGAACCATTAGATCAGCACTGTGTTGCTAATCTAATAAATGCCTGTACAG GACTTGAAGACATGTACAAGGGAAAGCAGATTCACTCTTTAGCTCTTAAACTTGGGCTAC TTGTTGATTTCATCAGTGCATCCCTAGTAAACATGTATGCAAAATGCCATCACATTGAGT GGGCTTCTCAGTTATTCTCTAGCACATTATTTCCACGAAATCTAGTGATAATCAATGCCA TGATCTCTGGATATTGCTGGAATTCACTGCCACAGAAAGCTCTTCTACTCTTCTGCAGAG AATATCGTTCTGGTCTGCGTCCTGATCATTTCACCTTCTCAACTGTTCTTGGGGCATGTG CTGATATAGGAGCAAAGGAGGCTGGTGAGCAAATCCATGGCCATCTTGTGAAGATTGGTT CTGAATACTTGGATGTTGTTGTTGGAAACTCTATCATAAACTTTTATGTCAAGTGTGGGT GCATTGCTAATGCTTGTAGGTTTTTCCATAGCATGAGGAGTCGAAACATCAATTCATATG CAATGTTGATGTTGGGTTATATTCAAAATAGATGCAGTGATGAAGCTCTTCAATTTTTCT CCATGATGCAACAGAGTGGGTTGCGTGCAAACCGTGTTACCTTTGCAAGAATCTTGAGGG GGTGTGCTGATCTTTGTGCTATTCATTTGGGAAGGCAACTGCATGCTTCCATTATAAAAA TGGGCCTGATTTCTGATGTATATGTGGCAAATGCACTTGTAGGAATGTATAAAAAATCTG AAGGTTGGGTGGAATCAAAAAGAAATTCTAAAGAAACTTTGGCTCCAGAACAGGATGCCG AAGATAATTGCTATTCAGAACAAAGAGATATAAGAAGCACACTTGAAGAAATTGGATTAT TCACATTGGAAGAAGAGAAAGACAAAGAAACTTTTGCTGATGAGCGGAAGGTCTACACTA GTGCTGCTTCTGTGTTTGGACGTGATCTTAGGACCGATTCTATCATTGGGAATTGGAAGA ATGGCAGGTGCAATGAAAGCGGGCATTTGCTAAATTACAAGAGTGCAGAATATCAGGAAA TTGGAGGTGAACCTTTTAAGTTGTTTGCATTGTTACAGGAGGATAGCAGAAGATCTGACA AATTTGTCCTGCTGGTCATCACTGATAATAGTCACTTAAAGACGAAGGGTGCAGGTTTTA TTAATGCAGAACTAGCGAGACGACCTGGTTTTGCACCAGCACTTGACTTTCCTCCTTGAC AAACTATAGTGCAGTATGAGAACTACCGGATCCATATTATGCAGCAAATCTGAATTGTCA TGTTTACATATTGGAAACACATGCAAGAAAACAAACTATGAGTTTGCCTCATAGTTGCAT CAGTAATCCCCCCAAATCAATCATTGAATCTATGAATTTCACACGGTGCACTTCCTGGGA CCATCCAACTCAGTCTCTCTCTGCATTTACATAAATGATGTTTACAGCATCTTTAAGCAA ACCAAATTCTGCTATGAAGTTTTTTCAAATGTTGGATGGCCTAGGTGCATGCAGGATAGA TCAAGGATGTTAACCAGGGATGCCTACTCTTCAAATATTCCAAAGAGAGGGGAAGTAGTC TGGGAAAAATCAGCTTAAGTTTTGATCACTGATGTGAGTTAATGAACTTGAGCTTTAGAC CTTTGACAGTGCTTGAACAGCTTTTACCAATACCTTGTATAGTGTAAAAAATACTTTACC TGGTTGTCATAACTTCAATGTGTGAAAATAGAAATTAGTTTTTCGGACAGTTATTTTGGA TGATTTCATGCACTTCATTGGTATAATTATGGAGCTAACAAAGCTGAAAAGCAAACCAAC CAATTATTTCCCACAAGAGTGCACACTTATTTGACTCTTGAATCTCTTTCTGTTTCCCAT TTTTCAAAATCAAGGCTATGTTTTACATGCTCAGACCTATCTAGACTTGCCCTTGGTCAG TCTCTACCATGTTCCTGGTGTCCATACCTAGATATATTTTTCCTTTTTAATGAAATGATA AGATACTGGTTTGATATAGCTATCTGTCACTGACATTGTTGAAGACCATACGTTTGACGC TACCACCTAGTAGTTGCAGGTTCAGGGTGTGTTCGGCCGGCCAACTACAGCGGCTGTGCA GCACTGCTGCTGCAGTGACTACAGTAGAAATTGTATATTGCTACCGTAGCTGCTGGCTGC CATCTAGTCACACCGAACAGGGCCCTCAATCTCAGGCAAACTGGAATAACAAAGGCTTTA TGTAGACTAAATATTCTAAATTAATTCTGTTAATATTTGTGCTATTACATAAAAATATAA ATGATTGCTATTTTGAGGCTTGCAAGGCTATCACATCTAACGGAATGCTTTATTTCTAGC TTAGCTCATTTATGTTTCCTTCTGACAGGTACTAATTACACTTGAATGAAATGAGTGCTA CAGAGGGTGTGTTTAGTTCACGCTAAAATTGAAAGTTTGGTTGAAATTGGAACGATTTGA CGGAAAAGTTGGACGTTTGTGTGTGTAGGAAAGTTTTGATGTGATGGAAAAGGTTGGAAG TTTGAAGAAAAAGTTTGGAACTAAACAAGGGCAGAGTACAGAAGAAATTCCAAGGATATG TATTCTTTTTTTTCGTGATTCTGCCCATCGTCTGAAGGTGAGATTGTAAGTGTTGTGCTG CTGTTGGCCTTTTTCCAGTAGTATCTCCTCTGTAGACTCCCCTATAGCAGTATCTCCTCT GTAAATTCTCTCTTGTTGAAAAGTTTATATCCTTGCTAATGACACTGCCAGCATTTGCAT TGCCAGATTGTTTTGCTATATAGTATTAGATGTGTTCTATAGTGGCTTCTGATCTGCAGA TCCAAAAACCTTTTATTTACAAGTTTTGCAGCTTAAAGTAACATTCGTTGAATTATGGTG ATGTGACACTTTTCATTTGTAAACCAATCTCAGTGTTATTTAGTGGGACAAACAACCAGT TGAGCATCTTTTTAAATAAACAAAAAAAAATCATATGCTGATACTTTTTTTTTCCTTGAT CATCAGGGTCTGACGAAGATACAAGCTAAAGCAGCGCCATCCAGTGAAACAACACCGTTT CCTTTTCTGTATGTCTGGAGCAAGAAGTATCAAACTGTTTTCCTTTCATATAATCTTTAC TCCTGCGCACCTTATTTTTTGGCTGGTGCGACATGAAATATACTGATACTAACTTGATAC TAACTTGAAGCCATTAGTTGTCCATAACTCCATATAGAACCTGAGCTAGAGGCTAAAGCC TAGAGGTTTAGTGACTTCTGTACGAGGTACCATACGGTATATCCTGGATTCATTCCATGT TCAGCTGTAGGATATCCTTCAGAAATTAGTTCGACCAATAATGCTGGGATCTCCCATTTA TCAGTCACCAATCCTGCTAACCCAGGTTAGTCTTCTTTCTCATCAGAACTTGGTACACGT CTAACTGATTTTTTCTGCAATATTCGTTTCTCTTAATCTTTTCCTGATGCCAATAAATCT CTAGCAGAAATTCCTTCGGCTGCTACTTTCATCATCCATCGACATTAGAAAAAGGCAGAT CCATCAGGACGTGCATTTGACAATTTGGCCCTGCTTCAGGCTGAAACTGATTGGTCCCAT CAACTTGATGAGGTTATGAAATTTCAAGATGTGATCCTGAACAAGATTGGGACATCAAAC TTCTGTAGCATTACATCCAACAGGAGCTATCAACTACCAAGTGACTTTTTTTTTTTTTTG CCACCATCAGTTCAGTGGAGTAGAGGAGTCCGCCTCATGCAGATGTTATCTTACTGTAGT TATACTGATTTTAAGTTGCCAATTTTGCCACATCTTAACTACCATGCTGTAGACTACTAT GAAGTCTGGACACCCCGGCAACTTCAATTTTGCTGTAATGACAAGAGGAGCCCTGCGTTT CATGTG