Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0534600-02
CDS Infomation	cds chromosome:IRGSP-1.0:5:26544666:26552096:-1 gene:Os05g0534600 gene_biotype:protein_coding transcript_biotype:protein_coding description:CASC3/Barentsz eIF4AIII binding domain containing protein. (Os05t0534600-01);CASC3/Barentsz eIF4AIII binding domain containing protein. (Os05t0534600-02)
Sequence	ATGGCCGACAGGGAGAAGGCGGAGGAGACGGAGGAGGAGTACGAGAGCGACCTCGACGAC GCGCCCCTCCCGGCGGTGCGGCGCCGGGACGCGGCGAGCGACTACGACGAGGAGGAGGAG GAGGAGGAGGAGGAAGGGGCGAGGCCCTCTCCGCCTACGAAGGCCGGATCCGACGCGGAA TCCGACGGGCAAGGCGCCGCCGAGGTGTACGACGACGACGACGCGTACGAAGATGACGAA GGGTACGAGGAATACGGGGAGGTGTACGAGGAGTTCGAGCAAGGGCGAGGCGTTGCGGGC GGAGTGGCCACCGGGGCGGTGGCCGCAGCGGGGGAGGAGGCGGGGATGGGTATGAAGGGG GAAGCGGAAGGTGAGGCGTCGGCGGCAGCGGCGGAGGGAGAGGAGGGGAAGAAGGGGAGC GAGCCCTATGCCGTCCCGACGGCTGGCGCCTTCTACATGCACGACGACCGCTTCCAGGAG GCCCGTGGCCATGGGCGCCAAAGGAGAATGGTGGGTGATAGACGGCTGTGGAATGCTAAA GAGGATCAAGCGTGGGTCCATGACAGATTTGATGAAATGAATTTACATGATTTCCATAAT GACTACACAAGAAGAAGGCCCAGAGGTCGATTTAGAGGACGTGGTGGTGCACCTGTTGGT AAAGTTCGTGGTGGTAGCCGTGATAATTTCAGAGGCAACAGGTCGCAGACATACTATCGT GATGGTGCTAAGAACTACATATACGTTCCGAAAGAACCTCATAGTTACCATGATAACACC AAGAAGGTTCAACAGGTTCTGAATGATAATGGCAAGAATAGAACCATCAAACCACCTAAT CCTCGTGATGGCGATGCCAACAATTTCGATTTTGTTCGAAAAGAGTCTCGCCCTCTTTAT GGCAATGCCAAAAGTAATAAGAGTGCACCGAGAGTAGTTCGAGGAAGAGGCTCTAAACGT TACCAACCACATTGGAGGAGTACCGCTGAGATATCTTCAGAGCATAATAATAAATCACAA AATCTTGAAAACACTTCTTCAAATGCAAACTTGGGAAAACACCAACATCAAGCTTCAAAT TCTCAACCAGAACGAGGATTTCCGATGAAGCAGAGCTTTGCATCAAATTTGAATTCAGCT TCACCTCCCTTTTACCCTTCTAGGCCATCTCATCAGGAACTCCCAGTGAGTCAGAGGGGG GATGGACAACCCAGTACCACTACTAGACACTTCTCATCCCCCATTGGTATGGAGCATGTC TCTCCAACCCCACAGTATGGCCCTCTCTTAAGAGGGAAAGCCTTTGTACCGTCTGCTGGG CATGGCAAGTTGCATGCTGAAGTTCCTATAAAGGGCATGGATCATCCTTCATTTCATTCA TCTACATCATCATCAACTAGTCAATTTCCTATAGCTACTAATCAGGTCACTGGAAATTCG GCTAAGTCCCCACACCCAATTGTCCAACAAAGGTTGGTTCAATCATTTAATCAATCCACA CCAAAGATGCCTGGTCAGATGTTTGCTGCGCAATTTGCTAGCAGTGATAAATTGCCATCT TCCATGCAATCTACATCAACAATTTTGACTGAAGGCACTGAAATTTCTTCACCTCATGGT TCCAACAAATCTAATACTAGATTGATGGCAAAGGGACAACATAGTGACCAGGGAGAAGAA CATGCTTCTTTTATGTATGGTGGAGCTCAAGTTCTTGGGACTACAGGATCACTTGGTGAC CAAAATTTCCATGGAACCCCTGCACTATTTCCAGTTATGCAGTTTGGAGGCCAGCATCCA GGTGGGACTGGCGTTCCCTCAATTGGCATGGCTCTACCAGGATTTGTGTCTCAACAACAA CTTGGTCTGAGCAATTCTGAAATGACTTGGCTACCGATATTGGCTGGTGCTTCTGGAGCT TTGGGAGCAACGTATGGTTCACCTTATATTACTGTAGATGGCAGCTATTATCCCCGAACT TCTGAACATGCATCTTCATCAGTTTCTTTGAGAGAACCCAGTGCCTCTTCTCAGTTGAAG TCACAAGAAATAACTGAGGCTTTAAATGATGAACTTAGTCAACGCCAACATAAACCTCGG AGATATTCGGAAATGAACTTTGGCAAATGA

Peptide Sequence

PEP ID	Os05t0534600-02
PEP Infomation	pep chromosome:IRGSP-1.0:5:26544666:26552096:-1 gene:Os05g0534600 transcript:Os05t0534600-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:CASC3/Barentsz eIF4AIII binding domain containing protein. (Os05t0534600-01);CASC3/Barentsz eIF4AIII binding domain containing protein. (Os05t0534600-02)
Sequence	MADREKAEETEEEYESDLDDAPLPAVRRRDAASDYDEEEEEEEEEGARPSPPTKAGSDAE SDGQGAAEVYDDDDAYEDDEGYEEYGEVYEEFEQGRGVAGGVATGAVAAAGEEAGMGMKG EAEGEASAAAAEGEEGKKGSEPYAVPTAGAFYMHDDRFQEARGHGRQRRMVGDRRLWNAK EDQAWVHDRFDEMNLHDFHNDYTRRRPRGRFRGRGGAPVGKVRGGSRDNFRGNRSQTYYR DGAKNYIYVPKEPHSYHDNTKKVQQVLNDNGKNRTIKPPNPRDGDANNFDFVRKESRPLY GNAKSNKSAPRVVRGRGSKRYQPHWRSTAEISSEHNNKSQNLENTSSNANLGKHQHQASN SQPERGFPMKQSFASNLNSASPPFYPSRPSHQELPVSQRGDGQPSTTTRHFSSPIGMEHV SPTPQYGPLLRGKAFVPSAGHGKLHAEVPIKGMDHPSFHSSTSSSTSQFPIATNQVTGNS AKSPHPIVQQRLVQSFNQSTPKMPGQMFAAQFASSDKLPSSMQSTSTILTEGTEISSPHG SNKSNTRLMAKGQHSDQGEEHASFMYGGAQVLGTTGSLGDQNFHGTPALFPVMQFGGQHP GGTGVPSIGMALPGFVSQQQLGLSNSEMTWLPILAGASGALGATYGSPYITVDGSYYPRT SEHASSSVSLREPSASSQLKSQEITEALNDELSQRQHKPRRYSEMNFGK

Transcript Sequence

Transcript ID	Os05t0534600-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:26544666:26552096:-1 gene:Os05g0534600 gene_biotype:protein_coding transcript_biotype:protein_coding description:CASC3/Barentsz eIF4AIII binding domain containing protein. (Os05t0534600-01);CASC3/Barentsz eIF4AIII binding domain containing protein. (Os05t0534600-02)
Sequence	CAGTCCTCTCCCTCCCGTAGACCGTGGATATCGTAGAACAAACGGAAGAACACGAGAAGC CTCTCGAAGCTTCCAGAATCCCGATTCCACCAGATTCCTCCCCCCCCCCCCCGGAGCCCT AATTCTCTCGCGCGGTTCGTCCCGCGACCTCCCGGTTCCTGCCAATGGCCGACAGGGAGA AGGCGGAGGAGACGGAGGAGGAGTACGAGAGCGACCTCGACGACGCGCCCCTCCCGGCGG TGCGGCGCCGGGACGCGGCGAGCGACTACGACGAGGAGGAGGAGGAGGAGGAGGAGGAAG GGGCGAGGCCCTCTCCGCCTACGAAGGCCGGATCCGACGCGGAATCCGACGGGCAAGGCG CCGCCGAGGTGTACGACGACGACGACGCGTACGAAGATGACGAAGGGTACGAGGAATACG GGGAGGTGTACGAGGAGTTCGAGCAAGGGCGAGGCGTTGCGGGCGGAGTGGCCACCGGGG CGGTGGCCGCAGCGGGGGAGGAGGCGGGGATGGGTATGAAGGGGGAAGCGGAAGGTGAGG CGTCGGCGGCAGCGGCGGAGGGAGAGGAGGGGAAGAAGGGGAGCGAGCCCTATGCCGTCC CGACGGCTGGCGCCTTCTACATGCACGACGACCGCTTCCAGGAGGCCCGTGGCCATGGGC GCCAAAGGAGAATGGTGGGTGATAGACGGCTGTGGAATGCTAAAGAGGATCAAGCGTGGG TCCATGACAGATTTGATGAAATGAATTTACATGATTTCCATAATGACTACACAAGAAGAA GGCCCAGAGGTCGATTTAGAGGACGTGGTGGTGCACCTGTTGGTAAAGTTCGTGGTGGTA GCCGTGATAATTTCAGAGGCAACAGGTCGCAGACATACTATCGTGATGGTGCTAAGAACT ACATATACGTTCCGAAAGAACCTCATAGTTACCATGATAACACCAAGAAGGTTCAACAGG TTCTGAATGATAATGGCAAGAATAGAACCATCAAACCACCTAATCCTCGTGATGGCGATG CCAACAATTTCGATTTTGTTCGAAAAGAGTCTCGCCCTCTTTATGGCAATGCCAAAAGTA ATAAGAGTGCACCGAGAGTAGTTCGAGGAAGAGGCTCTAAACGTTACCAACCACATTGGA GGAGTACCGCTGAGATATCTTCAGAGCATAATAATAAATCACAAAATCTTGAAAACACTT CTTCAAATGCAAACTTGGGAAAACACCAACATCAAGCTTCAAATTCTCAACCAGAACGAG GATTTCCGATGAAGCAGAGCTTTGCATCAAATTTGAATTCAGCTTCACCTCCCTTTTACC CTTCTAGGCCATCTCATCAGGAACTCCCAGTGAGTCAGAGGGGGGATGGACAACCCAGTA CCACTACTAGACACTTCTCATCCCCCATTGGTATGGAGCATGTCTCTCCAACCCCACAGT ATGGCCCTCTCTTAAGAGGGAAAGCCTTTGTACCGTCTGCTGGGCATGGCAAGTTGCATG CTGAAGTTCCTATAAAGGGCATGGATCATCCTTCATTTCATTCATCTACATCATCATCAA CTAGTCAATTTCCTATAGCTACTAATCAGGTCACTGGAAATTCGGCTAAGTCCCCACACC CAATTGTCCAACAAAGGTTGGTTCAATCATTTAATCAATCCACACCAAAGATGCCTGGTC AGATGTTTGCTGCGCAATTTGCTAGCAGTGATAAATTGCCATCTTCCATGCAATCTACAT CAACAATTTTGACTGAAGGCACTGAAATTTCTTCACCTCATGGTTCCAACAAATCTAATA CTAGATTGATGGCAAAGGGACAACATAGTGACCAGGGAGAAGAACATGCTTCTTTTATGT ATGGTGGAGCTCAAGTTCTTGGGACTACAGGATCACTTGGTGACCAAAATTTCCATGGAA CCCCTGCACTATTTCCAGTTATGCAGTTTGGAGGCCAGCATCCAGGTGGGACTGGCGTTC CCTCAATTGGCATGGCTCTACCAGGATTTGTGTCTCAACAACAACTTGGTCTGAGCAATT CTGAAATGACTTGGCTACCGATATTGGCTGGTGCTTCTGGAGCTTTGGGAGCAACGTATG GTTCACCTTATATTACTGTAGATGGCAGCTATTATCCCCGAACTTCTGAACATGCATCTT CATCAGTTTCTTTGAGAGAACCCAGTGCCTCTTCTCAGTTGAAGTCACAAGAAATAACTG AGGCTTTAAATGATGAACTTAGTCAACGCCAACATAAACCTCGGAGATATTCGGAAATGA ACTTTGGCAAATGAACATAGTGACGATGGTGTTAATGAGGACTTCATCTGTTAGATTTGG GTCTGTGCAAGACTTCTATCTCAAGGCCTTTCTGGGTCCTTGCAACACTTCAGTGTCTGA TCTGTAGCACTTTGGGCTGTATCCAGAATGAATGCCAGGTTTGACAGTTGAAGGTGTTTA TATCCTTACTATAGTCATTTGCAGTGATTATTCTGATGGGCAGTTGCTATTGTGTAATTA GGTGAGATTTACATGGTACACCGTCCATGTTGCTATTGATCATCTTCACATTGGCATGCA TATATGAATAATGCGCGATGGAGAATACGTGAGGTCTCTGTTATTGTAAGCTCCTTTTCT TGGTGAAAGAGGGGGAATACAAGGTGGTGTTGGGTTTGCTTGTGTTGCTCAGCTGACTTG ATCACTGTCGGTTAATCCGTTATGACATTTTGAAGATCTGCTATGTGATGTGTTCCCTTT GCTGAAGATATTGTCGCGATATACTAGTTCGGTACGTGTTAGTGTTACACAGAGTTCTTT CTGTTCAGTTCATACTACTTGTAACTGTGTAAGCACCAGGTCTTCTGAATTACTACAATT TTACCATTGGTTTCCCTTTATAGTGGAGTATGATATTAACAACTACTACGTAGAAAGATG TAAAAGTGAGAAACTTATGTGAATGTTGTACATGCACGTCTTATAAAAAAATATTTATTT ATTTTGGTC