Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0533600-02
CDS Infomation	cds chromosome:IRGSP-1.0:5:26485770:26493929:1 gene:Os05g0533600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SOLUBLE STARCH SYNTHASE IVB description:Starch synthase, Starch biosynthesis (Os05t0533600-01);Starch synthase, Starch biosynthesis (Os05t0533600-02)
Sequence	ATGGCGTGCTTGGCGGCGGGCGCCGAGGCGGCCCCTCTCCTCTTCCGGCGGCGGCTAGCG CCGTCCCCAGTCGCCGCGCGCCGCCGCCTTCTCGTGTCGTGCCGAGCTCGCCGCCGCGGT CTCAGGTTGGTAGCCCAGAGCGCAGGATCGCGTGGTTGCGGCGTGGTCGGTGCACCCGGT TGTGATTACTGGGTGAATATGCAGAGAGATGAAGCATCTGTTTCCAGTGATAAAGAACGG CAAGAGAAATATGGAGATGAAAATGGTATATCAAACCTTCAATTGGAAGATTTGATACAA ATGATACAAAACACTGAGAAGAATATAATGCTTCTGAATCAAGCTCGTCTTCAAGCATTG GAACATGTTGAAACAGTTCTTAAAGAAAAAGAAGACTTACAGAGGAAGTTGAAAATTTTG GAGACGAGATTGTCAGAAACAGATGCACGGCTTAAGCTTTCAGCTGAAGGGCAGTTCGGT ACTGAGATTAATGACTCTCTACCAGTACTGGAATTAGATGATATAAAGGAAGAGAATATG CTACTGAAGGATGACATACAATTTCTGAAAACAATGCTTATTGAGGTTGCTGAGACAGAG AACAGTATATTCACATTAGAGAAGGAGCGTGCTCTTTTAGATGCTTCGCTTAGGGAGCTG GAGTCTAGATTTATAGATGCCCAAGCAGATATGTTGAAGTCTGATCCTAGGCAGTATGAT GCATGGTGGGAGAAAGTAGAAAATTTGGGGGACTTGCTTGAGACTGCAACAAACAAAGTA GAGAATGCTGCTATGGTTCTGGGACGCAATCATGATTTGGAAGATAAGGTCGACAAACTA GAGGCATCGTTGGCTGAAGCAAATATATCAAAGTTCTCTTGTTATTTTGTTGATCTTTTG CAGGAAAAGATAAAATCAGTAGAAGAGCGCTTCCAAGTATGTAATCATGAAATGCATTCT CAAATTGAACTCTATGAGAATTCAATAGCGGAATTTCACGATATTCTTAGCAAGCTAGTG GAGGAAACTGAGAAACGATCACTAGAGCATTCAGCAAGTAGCATGCCTTCAGAATTGTGG AGTAGGATATCTCTTCTGATTGATGGTTGGTTGCTCGAGAAGAGAATATCCTACAATGAT GCAAATACATTACGGGAAATGGTCAGGAAAAGGGATAGTTGTCTTCGGGAAGCATACTTG TCATGCAGAGGTATGAAAGATAGGGAAATTGTGGACAATTTTCTAAAGATCACATTGCCA GGGACTAGTTCTGGCTTGCACATCATCCACATAGCAGCAGAGATGGCTCCTGTTGCAAAG GTTGGTGGTTTGGCGGATGTGATATCTGGTCTTGGCAAGGCACTTCAGAAAAAGGGCCAC CTAGTAGAGATTATTCTTCCAAAATATGACTGCATGCAGAATGACCAAGTTAATAACCTT AAGGTTTTAGATGTTGTTGTACAATCCTACTTTGAAGGAAATTTGTTCAACAACAAAATA TGGACTGGGACTGTTGAAGGCCTTCCAGTCTATTTTATCGAGCCACAACATCCAGCAAAA TTCTTTTGGAGGGCACAATACTATGGAGAACACGATGACTTTAAACGTTTTGCATACTTC AGCCGTGCAGCACTGGAATTACTTTACCAATCGCAGAAGAAAATTGACATCATCCATTGC CATGACTGGCAGACTGCATTTGTGGCACCTCTTTATTGGGAAGCATATGCAAATCTGGGC TTCAACTCAGCTAGAATTTGCTTCACCTGCCATAATTTTGAATATCAAGGAGCTGCTCCT GCTCAAGATTTAGCATGCTGTGGCCTTGATGTTCAGCAACTTGATAGGGAAGACAGGATG CGGGACAATTCACATGGCAGAATAAATGTTGTCAAGGGTGCAATTGTGTATTCCAACATT GTGACAACTGTATCACCAACATATGCACTAGAGGTGCGATCAGAGGGTGGACGTGGACTA CAAGATTCACTCAAATTACATTCCAGGAAATTTGTTGGGATACTTAATGGAATCGACACA GACACATGGAATCCTTCAACAGATAGACATCTCAAGGTTCAATATAATGCTAATGATCTC CAGGGTAAGGCAGCAAACAAAGCAGCTCTCAGAAAGCAGCTAAACTTATCTTCTACAAAT GCTTCTCAACCACTGGTTGGGTGTATTACAAGGCTAGTTCCTCAAAAGGGTGTACATCTC ATCAGGCATGCAATATACAAAACAGCTGAGCTAGGAGGACAGTTTGTTCTTCTGGGCTCA AGTCCAGTACCACACATTCAAAGAGAGTTTGAGGGTATTGCAGACCATTTTCAGAACAAT AACAATATCCGACTGCTTTTGAAGTATGATGATTCTTTATCCCATTGGATTTATGCAGCA TCTGACATGTTCATTGTTCCATCCATGTTTGAGCCATGTGGCCTCACACAGATGATTGCC ATGAGATATGGTTCTGTGCCGATTGTTCGGAAAACCGGTGGATTGAATGACAGTGTCTTC GATTTCGACGACGAAACGATACCTAAGGAGCTGCGGAATGGCTTTACGTTTGTGCATCCT GATGAAAAGGCTCTAAGTGGTGCAATGGAGAGAGCGTTCAACTACTACAATAGAAAGCCT GAGGTCTGGAAACAGCTGGTGCAGAAGGACATGAGGATAGATTTCAGCTGGGCCTCTTCA GCTTCCCAGTACGAAGATATCTATCAAAGAGCAGTGGCTCGAGCGAGGGCAGCAGCATGA

Peptide Sequence

PEP ID	Os05t0533600-02
PEP Infomation	pep chromosome:IRGSP-1.0:5:26485770:26493929:1 gene:Os05g0533600 transcript:Os05t0533600-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SOLUBLE STARCH SYNTHASE IVB description:Starch synthase, Starch biosynthesis (Os05t0533600-01);Starch synthase, Starch biosynthesis (Os05t0533600-02)
Sequence	MACLAAGAEAAPLLFRRRLAPSPVAARRRLLVSCRARRRGLRLVAQSAGSRGCGVVGAPG CDYWVNMQRDEASVSSDKERQEKYGDENGISNLQLEDLIQMIQNTEKNIMLLNQARLQAL EHVETVLKEKEDLQRKLKILETRLSETDARLKLSAEGQFGTEINDSLPVLELDDIKEENM LLKDDIQFLKTMLIEVAETENSIFTLEKERALLDASLRELESRFIDAQADMLKSDPRQYD AWWEKVENLGDLLETATNKVENAAMVLGRNHDLEDKVDKLEASLAEANISKFSCYFVDLL QEKIKSVEERFQVCNHEMHSQIELYENSIAEFHDILSKLVEETEKRSLEHSASSMPSELW SRISLLIDGWLLEKRISYNDANTLREMVRKRDSCLREAYLSCRGMKDREIVDNFLKITLP GTSSGLHIIHIAAEMAPVAKVGGLADVISGLGKALQKKGHLVEIILPKYDCMQNDQVNNL KVLDVVVQSYFEGNLFNNKIWTGTVEGLPVYFIEPQHPAKFFWRAQYYGEHDDFKRFAYF SRAALELLYQSQKKIDIIHCHDWQTAFVAPLYWEAYANLGFNSARICFTCHNFEYQGAAP AQDLACCGLDVQQLDREDRMRDNSHGRINVVKGAIVYSNIVTTVSPTYALEVRSEGGRGL QDSLKLHSRKFVGILNGIDTDTWNPSTDRHLKVQYNANDLQGKAANKAALRKQLNLSSTN ASQPLVGCITRLVPQKGVHLIRHAIYKTAELGGQFVLLGSSPVPHIQREFEGIADHFQNN NNIRLLLKYDDSLSHWIYAASDMFIVPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVF DFDDETIPKELRNGFTFVHPDEKALSGAMERAFNYYNRKPEVWKQLVQKDMRIDFSWASS ASQYEDIYQRAVARARAAA

Transcript Sequence

Transcript ID	Os05t0533600-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:26485770:26493929:1 gene:Os05g0533600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SOLUBLE STARCH SYNTHASE IVB description:Starch synthase, Starch biosynthesis (Os05t0533600-01);Starch synthase, Starch biosynthesis (Os05t0533600-02)
Sequence	GCGCACGAGACACACGCCGCCCTCCTCCTTCCAGTTCACTCCACTCCGCTACTTTTTCCA ACCGTCGCCCCACGCGAACCCCGACGCCGCGCCCCCCTTCCCCAGCCTCCGCATCCGATT CCCATGGCGTGCTTGGCGGCGGGCGCCGAGGCGGCCCCTCTCCTCTTCCGGCGGCGGCTA GCGCCGTCCCCAGTCGCCGCGCGCCGCCGCCTTCTCGTGTCGTGCCGAGCTCGCCGCCGC GGTCTCAGGTTGGTAGCCCAGAGCGCAGGATCGCGTGGTTGCGGCGTGGTCGGTGCACCC GGTTGTGATTACTGGGTGAATATGCAGAGAGATGAAGCATCTGTTTCCAGTGATAAAGAA CGGCAAGAGAAATATGGAGATGAAAATGGTATATCAAACCTTCAATTGGAAGATTTGATA CAAATGATACAAAACACTGAGAAGAATATAATGCTTCTGAATCAAGCTCGTCTTCAAGCA TTGGAACATGTTGAAACAGTTCTTAAAGAAAAAGAAGACTTACAGAGGAAGTTGAAAATT TTGGAGACGAGATTGTCAGAAACAGATGCACGGCTTAAGCTTTCAGCTGAAGGGCAGTTC GGTACTGAGATTAATGACTCTCTACCAGTACTGGAATTAGATGATATAAAGGAAGAGAAT ATGCTACTGAAGGATGACATACAATTTCTGAAAACAATGCTTATTGAGGTTGCTGAGACA GAGAACAGTATATTCACATTAGAGAAGGAGCGTGCTCTTTTAGATGCTTCGCTTAGGGAG CTGGAGTCTAGATTTATAGATGCCCAAGCAGATATGTTGAAGTCTGATCCTAGGCAGTAT GATGCATGGTGGGAGAAAGTAGAAAATTTGGGGGACTTGCTTGAGACTGCAACAAACAAA GTAGAGAATGCTGCTATGGTTCTGGGACGCAATCATGATTTGGAAGATAAGGTCGACAAA CTAGAGGCATCGTTGGCTGAAGCAAATATATCAAAGTTCTCTTGTTATTTTGTTGATCTT TTGCAGGAAAAGATAAAATCAGTAGAAGAGCGCTTCCAAGTATGTAATCATGAAATGCAT TCTCAAATTGAACTCTATGAGAATTCAATAGCGGAATTTCACGATATTCTTAGCAAGCTA GTGGAGGAAACTGAGAAACGATCACTAGAGCATTCAGCAAGTAGCATGCCTTCAGAATTG TGGAGTAGGATATCTCTTCTGATTGATGGTTGGTTGCTCGAGAAGAGAATATCCTACAAT GATGCAAATACATTACGGGAAATGGTCAGGAAAAGGGATAGTTGTCTTCGGGAAGCATAC TTGTCATGCAGAGGTATGAAAGATAGGGAAATTGTGGACAATTTTCTAAAGATCACATTG CCAGGGACTAGTTCTGGCTTGCACATCATCCACATAGCAGCAGAGATGGCTCCTGTTGCA AAGGTTGGTGGTTTGGCGGATGTGATATCTGGTCTTGGCAAGGCACTTCAGAAAAAGGGC CACCTAGTAGAGATTATTCTTCCAAAATATGACTGCATGCAGAATGACCAAGTTAATAAC CTTAAGGTTTTAGATGTTGTTGTACAATCCTACTTTGAAGGAAATTTGTTCAACAACAAA ATATGGACTGGGACTGTTGAAGGCCTTCCAGTCTATTTTATCGAGCCACAACATCCAGCA AAATTCTTTTGGAGGGCACAATACTATGGAGAACACGATGACTTTAAACGTTTTGCATAC TTCAGCCGTGCAGCACTGGAATTACTTTACCAATCGCAGAAGAAAATTGACATCATCCAT TGCCATGACTGGCAGACTGCATTTGTGGCACCTCTTTATTGGGAAGCATATGCAAATCTG GGCTTCAACTCAGCTAGAATTTGCTTCACCTGCCATAATTTTGAATATCAAGGAGCTGCT CCTGCTCAAGATTTAGCATGCTGTGGCCTTGATGTTCAGCAACTTGATAGGGAAGACAGG ATGCGGGACAATTCACATGGCAGAATAAATGTTGTCAAGGGTGCAATTGTGTATTCCAAC ATTGTGACAACTGTATCACCAACATATGCACTAGAGGTGCGATCAGAGGGTGGACGTGGA CTACAAGATTCACTCAAATTACATTCCAGGAAATTTGTTGGGATACTTAATGGAATCGAC ACAGACACATGGAATCCTTCAACAGATAGACATCTCAAGGTTCAATATAATGCTAATGAT CTCCAGGGTAAGGCAGCAAACAAAGCAGCTCTCAGAAAGCAGCTAAACTTATCTTCTACA AATGCTTCTCAACCACTGGTTGGGTGTATTACAAGGCTAGTTCCTCAAAAGGGTGTACAT CTCATCAGGCATGCAATATACAAAACAGCTGAGCTAGGAGGACAGTTTGTTCTTCTGGGC TCAAGTCCAGTACCACACATTCAAAGAGAGTTTGAGGGTATTGCAGACCATTTTCAGAAC AATAACAATATCCGACTGCTTTTGAAGTATGATGATTCTTTATCCCATTGGATTTATGCA GCATCTGACATGTTCATTGTTCCATCCATGTTTGAGCCATGTGGCCTCACACAGATGATT GCCATGAGATATGGTTCTGTGCCGATTGTTCGGAAAACCGGTGGATTGAATGACAGTGTC TTCGATTTCGACGACGAAACGATACCTAAGGAGCTGCGGAATGGCTTTACGTTTGTGCAT CCTGATGAAAAGGCTCTAAGTGGTGCAATGGAGAGAGCGTTCAACTACTACAATAGAAAG CCTGAGGTCTGGAAACAGCTGGTGCAGAAGGACATGAGGATAGATTTCAGCTGGGCCTCT TCAGCTTCCCAGTACGAAGATATCTATCAAAGAGCAGTGGCTCGAGCGAGGGCAGCAGCA TGAACTCTGGCGGTTTAGTGAGACCTGAGCCTTTCTCTGACGCGGCGCTTGATGCCACAG GCACAGATTCTGCCTTCTGAAGAAGCCGCACCATGCACCTCTCTGATGTGCGAACATGGC TTCATCTGCAGCTTCGATTCTTGGAATGGAACCCAAGATATTTAAAGACATGATCCGTCA GACTCATGCAGGAAGCCGAGATGTTCCATAGTGCAGTTATGGAATGGTCGAAGAACTAAA ATCTTGGCACCCATTGTCGTGTCCCAGTGACAGTGTGGACTATACAGTTATATAACTTAT AGTACGTGATTGCTCAGTCGTGAAATTTCACTAGCCTCGATATATTTATCATGCGCTACG GTGAAATGATAAGTTTTGTTCTTTGTATCACTTGCAGTG