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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0526700-01
CDS Infomation

cds chromosome:IRGSP-1.0:5:26189646:26190616:-1 gene:Os05g0526700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Harpin-induced 1 domain containing protein. (Os05t0526700-01)
Sequence

ATGGCGACGGCGGCGGAGAACAAGAACGAGCCGGCGCGGCCATTCGCGGTGCCATCCCCG
TCGGTCCACCCGGCGGCGACCGGCGTGGGGGAGGAGGAGGAGGCGCAGGCGGCGACGGGG
TGGCGGTCCATGCAGTACCTCCGGAAGCGGCGGCGCGCGCTCTGCTGCTGCGGCTGCTGC
GTGACCACCCTGGTCGTCGTCGGCCTCGTCATCCTCGTCCTCGCGCTCACCGTGTTCAGG
GTGAAGGACCCCCGCATCACCATGAACGGCGTGTGGGTGACGGCCATCAGCACCGGCCCC
GGCACCGGCGCCGGCATCGGGAGCACCGTGGCGACCAACGCGACGCTCACCGCCGACGTC
TCGGTCAAGAACCCCAACGCCGCGTCGCTCCGGTTCTCCCGGAGCGAGACGGACGTGTAC
TACAAGGGGAAGACGGTGAGCGTGGCGTACGTCCCCGCCGGCAGCGTCGGCGCCGACCGG
ACGGTGCGGATGAACATCACGCTCGACCTGCTCGCCGACCGCCTCGCGTCGGTGCTCAAC
GGCACGGGGCTGATACTCGGGCAGGAGTACGACCTGACCACCTACACGGCGATGAGGGCG
AGGGTCAGCGTGCTGGGGATCATCAAGAAGAGCCTCGACGTTCGGATGAACTGCTCGGTC
ATCTTGGACGTCGCCGGCATCGCCGGCGTGCTGCTGCCCGGGGACGGGGCCAAGTCGGGC
GTGCAGACTAGGAGCGTGGATTGCGTTGCAATCGTGAGCTGA

Peptide Sequence

PEP ID

Os05t0526700-01
PEP Infomation

pep chromosome:IRGSP-1.0:5:26189646:26190616:-1 gene:Os05g0526700 transcript:Os05t0526700-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Harpin-induced 1 domain containing protein. (Os05t0526700-01)
Sequence

MATAAENKNEPARPFAVPSPSVHPAATGVGEEEEAQAATGWRSMQYLRKRRRALCCCGCC
VTTLVVVGLVILVLALTVFRVKDPRITMNGVWVTAISTGPGTGAGIGSTVATNATLTADV
SVKNPNAASLRFSRSETDVYYKGKTVSVAYVPAGSVGADRTVRMNITLDLLADRLASVLN
GTGLILGQEYDLTTYTAMRARVSVLGIIKKSLDVRMNCSVILDVAGIAGVLLPGDGAKSG
VQTRSVDCVAIVS

Transcript Sequence

Transcript ID

Os05t0526700-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:26189646:26190616:-1 gene:Os05g0526700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Harpin-induced 1 domain containing protein. (Os05t0526700-01)
Sequence

GCTATAGCTAGCTAGCTCCAGCTCCCATGGCGACGGCGGCGGAGAACAAGAACGAGCCGG
CGCGGCCATTCGCGGTGCCATCCCCGTCGGTCCACCCGGCGGCGACCGGCGTGGGGGAGG
AGGAGGAGGCGCAGGCGGCGACGGGGTGGCGGTCCATGCAGTACCTCCGGAAGCGGCGGC
GCGCGCTCTGCTGCTGCGGCTGCTGCGTGACCACCCTGGTCGTCGTCGGCCTCGTCATCC
TCGTCCTCGCGCTCACCGTGTTCAGGGTGAAGGACCCCCGCATCACCATGAACGGCGTGT
GGGTGACGGCCATCAGCACCGGCCCCGGCACCGGCGCCGGCATCGGGAGCACCGTGGCGA
CCAACGCGACGCTCACCGCCGACGTCTCGGTCAAGAACCCCAACGCCGCGTCGCTCCGGT
TCTCCCGGAGCGAGACGGACGTGTACTACAAGGGGAAGACGGTGAGCGTGGCGTACGTCC
CCGCCGGCAGCGTCGGCGCCGACCGGACGGTGCGGATGAACATCACGCTCGACCTGCTCG
CCGACCGCCTCGCGTCGGTGCTCAACGGCACGGGGCTGATACTCGGGCAGGAGTACGACC
TGACCACCTACACGGCGATGAGGGCGAGGGTCAGCGTGCTGGGGATCATCAAGAAGAGCC
TCGACGTTCGGATGAACTGCTCGGTCATCTTGGACGTCGCCGGCATCGCCGGCGTGCTGC
TGCCCGGGGACGGGGCCAAGTCGGGCGTGCAGACTAGGAGCGTGGATTGCGTTGCAATCG
TGAGCTGATCAGCGGTTTTCTTGTGTGAGTACTGCATTGTCATTACAGCACCTCATTACA
TATGAATATGTATTTTTCTGGATGTATATTCTGCTACTCTCGTATGTATGTTTTTCTGGA
TATATATTATGCTACTTTCGTGTGTTCACAGATCGAATTCTCTCTAGGAAATAATACCCA
ATAGCATTATT