Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0521900-00
CDS Infomation

cds chromosome:IRGSP-1.0:5:25962545:25964535:-1 gene:Os05g0521900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to IQ calmodulin-binding motif family protein. (Os05t0521900-00)
Sequence

ATGGGCCGCGCGATGAGGTGGTTCAAGAAGGTTCTCACCGGCAAGAAGGAAGGAGGAGAC
AGGGATCGGAAGGAGCACAGCGCCGCCGGAGGCGCCAATGGTGGCGTCGCGCCGCCGCCG
ATGGAGAGGAGGAGGTGGAGCTTCGCTAAGCCGAGGAGCAGTTTCGCTGACGGCAGCCGC
AGGCCCTCGGTCACCGCCGTCGTCGCCGGCGAGCTCTCGCAGGTCCGGCCATGCAGCTGC
GGCCAGCAACGGGAGGTGGAGGCGGCCGTCATGATCCAGAAGGCCTTCAGAGGATACCTG
GCTAGGAGGGCATTGCGCGCTCTCAAGGCGCTTGTCAAGATACAAGCTCTGGTACGTGGC
TACCTTGTGAGGAAGCAAGCAGCGACGACTCTGCAGAGGCTGCAAGCGCTCATGAGGCTC
CAAGCCTCCTCTCGCGCCATCAAGATGGCCTCATCGCGGAAATCCGTCGAACAGGAGAGG
ATTGTCGTGCAAATGCAAGGAGGGCGGGTAAAGACATTGACGTTGCCGGTGGTGCACCGC
CGTCGGGTGTCCGACGGCGGCGACATCAACTTCGACCGCAGCCCGAGGATCGTGGAGATG
GACACGTGCCAGCTCCGGTGCCGGTCTTCCCGGATCACGAGCCGCTACGCCGCCGACCCG
CCGCCGGACGGCACGCCGGGGTCGGTGCCGCTGTCCTCGCCGCACCTCTACTGCTACAAG
CCGCCGCCGTCGCGCCACCTCCAGGCCGAGGAGCACGAGCACGATGCGCGGGCGCAGCCG
AAGACGACGCACAACACGCCCCGGCTCGCCGCCGCGCTCCCGGCGGGGTACCACGGCCCG
GCGTCGCCGGCGAAGGGGCGCGTCGTGAGCCCGCGGTACATGGCGGACACGGCGTCGTCC
GTGGCGCGTGCGCGGTGCCAGAGCGCGCCGAGGCAGCGGCACGGCGCCGCCGGCGAGCCG
AGGCCTAGCCTGGCCCGCGCCGGGTCGAGGAAGTCGCGGCCGGACAGCGCCATCAGCTTG
AAGAGCTCGGAGATGAGCCGCCACGAGGACTCGGAGTTCAGCGACGACGTCACTAGAGAT
TATTACCTCGATCAGCTCTGGTGA

Peptide Sequence

PEP ID

Os05t0521900-00
PEP Infomation

pep chromosome:IRGSP-1.0:5:25962545:25964535:-1 gene:Os05g0521900 transcript:Os05t0521900-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to IQ calmodulin-binding motif family protein. (Os05t0521900-00)
Sequence

MGRAMRWFKKVLTGKKEGGDRDRKEHSAAGGANGGVAPPPMERRRWSFAKPRSSFADGSR
RPSVTAVVAGELSQVRPCSCGQQREVEAAVMIQKAFRGYLARRALRALKALVKIQALVRG
YLVRKQAATTLQRLQALMRLQASSRAIKMASSRKSVEQERIVVQMQGGRVKTLTLPVVHR
RRVSDGGDINFDRSPRIVEMDTCQLRCRSSRITSRYAADPPPDGTPGSVPLSSPHLYCYK
PPPSRHLQAEEHEHDARAQPKTTHNTPRLAAALPAGYHGPASPAKGRVVSPRYMADTASS
VARARCQSAPRQRHGAAGEPRPSLARAGSRKSRPDSAISLKSSEMSRHEDSEFSDDVTRD
YYLDQLW

Transcript Sequence

Transcript ID

Os05t0521900-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:25962545:25964535:-1 gene:Os05g0521900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to IQ calmodulin-binding motif family protein. (Os05t0521900-00)
Sequence

TTCGTGGCATTCGTCGTGCTGCAGATAGGTTGATTCACCATGGGCCGCGCGATGAGGTGG
TTCAAGAAGGTTCTCACCGGCAAGAAGGAAGGAGGAGACAGGGATCGGAAGGAGCACAGC
GCCGCCGGAGGCGCCAATGGTGGCGTCGCGCCGCCGCCGATGGAGAGGAGGAGGTGGAGC
TTCGCTAAGCCGAGGAGCAGTTTCGCTGACGGCAGCCGCAGGCCCTCGGTCACCGCCGTC
GTCGCCGGCGAGCTCTCGCAGGTCCGGCCATGCAGCTGCGGCCAGCAACGGGAGGTGGAG
GCGGCCGTCATGATCCAGAAGGCCTTCAGAGGATACCTGGCTAGGAGGGCATTGCGCGCT
CTCAAGGCGCTTGTCAAGATACAAGCTCTGGTACGTGGCTACCTTGTGAGGAAGCAAGCA
GCGACGACTCTGCAGAGGCTGCAAGCGCTCATGAGGCTCCAAGCCTCCTCTCGCGCCATC
AAGATGGCCTCATCGCGGAAATCCGTCGAACAGGAGAGGATTGTCGTGCAAATGCAAGGA
GGGCGGGTAAAGACATTGACGTTGCCGGTGGTGCACCGCCGTCGGGTGTCCGACGGCGGC
GACATCAACTTCGACCGCAGCCCGAGGATCGTGGAGATGGACACGTGCCAGCTCCGGTGC
CGGTCTTCCCGGATCACGAGCCGCTACGCCGCCGACCCGCCGCCGGACGGCACGCCGGGG
TCGGTGCCGCTGTCCTCGCCGCACCTCTACTGCTACAAGCCGCCGCCGTCGCGCCACCTC
CAGGCCGAGGAGCACGAGCACGATGCGCGGGCGCAGCCGAAGACGACGCACAACACGCCC
CGGCTCGCCGCCGCGCTCCCGGCGGGGTACCACGGCCCGGCGTCGCCGGCGAAGGGGCGC
GTCGTGAGCCCGCGGTACATGGCGGACACGGCGTCGTCCGTGGCGCGTGCGCGGTGCCAG
AGCGCGCCGAGGCAGCGGCACGGCGCCGCCGGCGAGCCGAGGCCTAGCCTGGCCCGCGCC
GGGTCGAGGAAGTCGCGGCCGGACAGCGCCATCAGCTTGAAGAGCTCGGAGATGAGCCGC
CACGAGGACTCGGAGTTCAGCGACGACGTCACTAGAGATTATTACCTCGATCAGCTCTGG
TGA