Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0521600-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:25949173:25952201:1 gene:Os05g0521600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PECTIN METHYLESTERASE 18 description:Pectin lyase fold/virulence factor domain containing protein. (Os05t0521600-01)
Sequence	ATGGCGGTGTCCGTGTCGTGGTCGTGGGCGCCGCGGTTCTTGGCCTGCGTCGCGGTGGCG GTGTTGCTTGTTACGTCGGGTTTGGGCGGTGCGGCCGCCGGCGGCGGCGGGCGACGCCAT GGGCACACGAAGGGGTTGCGGCCGGGGAAGGCGGCGGCGAAGCCGTACTATCCGGTGAAC GCGACGGCGGTGGAGGCGATCGAGCGGCAGTTCACGCGGTGGGTGCGGTCCATGGTCGGG CGACGCCACAGCACGTTCCAGCGCGCGCTCTACCGCGGGCTGCTGCCCACGCGCACCCTC GTCGTCGACAAGAACCCCGCCGCCGGCAACTTCACGTCCATCCAGGCCGCCGTCGACTCG ATCCCGCTCATCAACCTCGCCCGCGTCGTCATCAAGGTCAATGCCGGCACATACACTGAG AAGGTGACCATCTCGCCGCTCCGCGCGTTCGTGACCATCGAGGGCGCCGGCGCGGACAAG ACGGTGGTGCAGTGGGGCGACACGGCCGACACGGTCGGCCCGCTCGGGCGCCCCTTCGGC ACCTTCGCCTCCGCCACGTTCGCCGTCAACGCGCAGTTCTTCGTCGCCAAGAACATCACC TTCAAGAACACGGCGCCGGTGCCGAGGCCGGGGGCGCTGGGGAAGCAGGGTGTGGCGCTG CGGATATCGGCGGACAACGCGGCGTTCTTGGGGTGCAACTTCCTCGGCGCGCAGGACACG CTGTACGACCACCTCGGCCGCCATTACTACAGAGACTGCTACATCGAGGGCTCCGTCGAC TTCATATTCGGCAACGCCCTCTCTCTCTACGAGGGATGTCACGTGCACGCGATCGCGCGG AACTACGGAGCCCTGACGGCTCAGAACCGGATGAGCATCCTGGAGGACACGGGTTTCTCG TTCGTCAACTGCCGCGTGACGGGCTCCGGCGCCCTCTACCTCGGCCGCGCCTGGGGCACC TTCTCCCGCGTCGTCTTCGCCTACACCTACATGGACAACATCATCATCCCCCGCGGCTGG TACAACTGGGGCGATCCCACCCGCGAGATGACGGTGTTCTACGGGCAGTACAAGTGCACG GGGCCGGGTTCGAACTACGCCGGGAGGGTGGCGTGGTCGAGGGAGCTCACGGACCAGGAG GCCAAGCCGTTCATCTCCCTCAGCTTCATCGACGGGTTGGAGTGGGTCAAGTTGTAG

Peptide Sequence

PEP ID	Os05t0521600-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:25949173:25952201:1 gene:Os05g0521600 transcript:Os05t0521600-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PECTIN METHYLESTERASE 18 description:Pectin lyase fold/virulence factor domain containing protein. (Os05t0521600-01)
Sequence	MAVSVSWSWAPRFLACVAVAVLLVTSGLGGAAAGGGGRRHGHTKGLRPGKAAAKPYYPVN ATAVEAIERQFTRWVRSMVGRRHSTFQRALYRGLLPTRTLVVDKNPAAGNFTSIQAAVDS IPLINLARVVIKVNAGTYTEKVTISPLRAFVTIEGAGADKTVVQWGDTADTVGPLGRPFG TFASATFAVNAQFFVAKNITFKNTAPVPRPGALGKQGVALRISADNAAFLGCNFLGAQDT LYDHLGRHYYRDCYIEGSVDFIFGNALSLYEGCHVHAIARNYGALTAQNRMSILEDTGFS FVNCRVTGSGALYLGRAWGTFSRVVFAYTYMDNIIIPRGWYNWGDPTREMTVFYGQYKCT GPGSNYAGRVAWSRELTDQEAKPFISLSFIDGLEWVKL

Transcript Sequence

Transcript ID	Os05t0521600-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:25949173:25952201:1 gene:Os05g0521600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PECTIN METHYLESTERASE 18 description:Pectin lyase fold/virulence factor domain containing protein. (Os05t0521600-01)
Sequence	ACCATCCATGGCGGTGTCCGTGTCGTGGTCGTGGGCGCCGCGGTTCTTGGCCTGCGTCGC GGTGGCGGTGTTGCTTGTTACGTCGGGTTTGGGCGGTGCGGCCGCCGGCGGCGGCGGGCG ACGCCATGGGCACACGAAGGGGTTGCGGCCGGGGAAGGCGGCGGCGAAGCCGTACTATCC GGTGAACGCGACGGCGGTGGAGGCGATCGAGCGGCAGTTCACGCGGTGGGTGCGGTCCAT GGTCGGGCGACGCCACAGCACGTTCCAGCGCGCGCTCTACCGCGGGCTGCTGCCCACGCG CACCCTCGTCGTCGACAAGAACCCCGCCGCCGGCAACTTCACGTCCATCCAGGCCGCCGT CGACTCGATCCCGCTCATCAACCTCGCCCGCGTCGTCATCAAGGTCAATGCCGGCACATA CACTGAGAAGGTGACCATCTCGCCGCTCCGCGCGTTCGTGACCATCGAGGGCGCCGGCGC GGACAAGACGGTGGTGCAGTGGGGCGACACGGCCGACACGGTCGGCCCGCTCGGGCGCCC CTTCGGCACCTTCGCCTCCGCCACGTTCGCCGTCAACGCGCAGTTCTTCGTCGCCAAGAA CATCACCTTCAAGAACACGGCGCCGGTGCCGAGGCCGGGGGCGCTGGGGAAGCAGGGTGT GGCGCTGCGGATATCGGCGGACAACGCGGCGTTCTTGGGGTGCAACTTCCTCGGCGCGCA GGACACGCTGTACGACCACCTCGGCCGCCATTACTACAGAGACTGCTACATCGAGGGCTC CGTCGACTTCATATTCGGCAACGCCCTCTCTCTCTACGAGGGATGTCACGTGCACGCGAT CGCGCGGAACTACGGAGCCCTGACGGCTCAGAACCGGATGAGCATCCTGGAGGACACGGG TTTCTCGTTCGTCAACTGCCGCGTGACGGGCTCCGGCGCCCTCTACCTCGGCCGCGCCTG GGGCACCTTCTCCCGCGTCGTCTTCGCCTACACCTACATGGACAACATCATCATCCCCCG CGGCTGGTACAACTGGGGCGATCCCACCCGCGAGATGACGGTGTTCTACGGGCAGTACAA GTGCACGGGGCCGGGTTCGAACTACGCCGGGAGGGTGGCGTGGTCGAGGGAGCTCACGGA CCAGGAGGCCAAGCCGTTCATCTCCCTCAGCTTCATCGACGGGTTGGAGTGGGTCAAGTT GTAGCACCACGTAGGAGAGAAACACAGCTCACTCGACTATTAGTTAACTTGTGAAGAGAA AAGAATAGAACAGAAGAAGTGGCAGATAAACACTCTGATTTGATTCGATTGCAGATTTCA ACTTTGCAGTTGCATTGTGAGAC