Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0519600-02
CDS Infomation

cds chromosome:IRGSP-1.0:5:25797615:25803182:1 gene:Os05g0519600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:DJ-1/PfpI domain containing protein D, DJ-1 protein D description:Similar to 4-methyl-5(B-hydroxyethyl)-thiazol monophosphate biosynthesis enzyme. (Os05t0519600-01);Hypothetical conserved gene. (Os05t0519600-02)
Sequence

ATGCTCCCCTCGTCTCGTTACCTCCTCGCCCCGGCCCCACTTCCCGCCATGGTGGTACGG
CCACCGCCGCCGCATCCACCGAGCCGCGGAACTTCCCCTCTCGCTCGGCCACCATTGTGC
CGCGCCATGGCGCGGGCCGCCCCCTCGCTCTCTGCCGCGGCCTCGACGGCTGCCTCCTCC
TCGACGACTCCTGCCAAGAAGAAGGTTCTCTTGCCCATCGCCATGGGCACGGAGGAGATG
GAGGCAGTCATCCTTGCCGGTGTACTCCGCCGAGCCGGCGCCGACGTGACGCTGGCATCC
GTGGAGGACGGCCTCGAGGTGGAGGCCTCGCGTGGCTCCCACATCGTTGCTGACAAGCGC
ATTGCCGCTTGTGCAGACCAGGTGTTCGACCTCGTGGCTCTCCCGGGTGGAATGCCTGGT
TCAGTGCGGTTGAGAGACAGTGTGATCCTTCAGAGGATCACAGTTAGACAGGCTGAGGAA
AAAAGATTGTATGGTGCTATATGTGCTGCACCAGCTGTTGTTCTCATGCCGTGGGGCCTC
CACAAGAGAAAAAAGATCACTTGTCACCCATCCTTTATAGAAGATCTCCCAACATTCCGA
ACTGTTGAATCAAATGTTCAGGTGTCTGGAGAGCTAACAACAAGCCGTGGACCAGGGACA
GCATTTCAGTTTGCTTTATCATTTGTAGAGCAGTTGTTTGGGCCTTGTAAAGCTGAAGAT
ATGGACAACACTTTGTTGACAAAGGTTGACGATAATCTTGAAAGAAGTATTGAAGTCAAC
GAAATTGAGTGGTCTTCTGATCACAATCCTCATGTTCTCATTCCAATTGCAAATGGTTCA
GAAGAGATGGAGATAATAATGTTGACGGATGTTTTACGGCGAGCAAATGTAAATGTGGTG
TTGGCATCAGTTGAAAAATCAACAAGTATTGTCGGGTCCCAAAGGATGAGGATTGTTGCT
GATAAATGCATTTCAGATGCTTCTGCCTTAGAATATGATCTAATTATCCTTCCTGGAGGA
CCTGCCGGAGCTGAGAGACTGCACAAGTCCAGTGTTCTTAAGAAATTACTCAAGGAACAA
AAGCAAACAGGCAGGATGTATGGTGGGATCTGTTCTTCTCCTGTGATCTTGCAGAAGCAG
GGTTTACTCCAGGATAAAACAGTGACAGCTCATCCTTCCATAGTCAATCAGCTCACGTGT
GAAGTTATTGATCGATCAAAGGTTGTGATTGATGGAAATTTGATTACCGGGATGGGGCTT
GGGACGGTCATTGATTTTTCGCTGGCTATTATTAAAAAATTCTTTGGCCATGGACGAGCC
AAAGGCGTGGCAAATGGCATGGTTTTTGAGTATCCCAAGAGCTGA

Peptide Sequence

PEP ID

Os05t0519600-02
PEP Infomation

pep chromosome:IRGSP-1.0:5:25797615:25803182:1 gene:Os05g0519600 transcript:Os05t0519600-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:DJ-1/PfpI domain containing protein D, DJ-1 protein D description:Similar to 4-methyl-5(B-hydroxyethyl)-thiazol monophosphate biosynthesis enzyme. (Os05t0519600-01);Hypothetical conserved gene. (Os05t0519600-02)
Sequence

MLPSSRYLLAPAPLPAMVVRPPPPHPPSRGTSPLARPPLCRAMARAAPSLSAAASTAASS
STTPAKKKVLLPIAMGTEEMEAVILAGVLRRAGADVTLASVEDGLEVEASRGSHIVADKR
IAACADQVFDLVALPGGMPGSVRLRDSVILQRITVRQAEEKRLYGAICAAPAVVLMPWGL
HKRKKITCHPSFIEDLPTFRTVESNVQVSGELTTSRGPGTAFQFALSFVEQLFGPCKAED
MDNTLLTKVDDNLERSIEVNEIEWSSDHNPHVLIPIANGSEEMEIIMLTDVLRRANVNVV
LASVEKSTSIVGSQRMRIVADKCISDASALEYDLIILPGGPAGAERLHKSSVLKKLLKEQ
KQTGRMYGGICSSPVILQKQGLLQDKTVTAHPSIVNQLTCEVIDRSKVVIDGNLITGMGL
GTVIDFSLAIIKKFFGHGRAKGVANGMVFEYPKS

Transcript Sequence

Transcript ID

Os05t0519600-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:25797615:25803182:1 gene:Os05g0519600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:DJ-1/PfpI domain containing protein D, DJ-1 protein D description:Similar to 4-methyl-5(B-hydroxyethyl)-thiazol monophosphate biosynthesis enzyme. (Os05t0519600-01);Hypothetical conserved gene. (Os05t0519600-02)
Sequence

GTTCCAGGCTCGAGCACTCCGTTCTCCCGGGTCTCCGGTGCTGCTCCCGCCGCAGCCGGA
CACCCGAACGCGAAGCTCCAACTCTCCAATGCTCCCCTCGTCTCGTTACCTCCTCGCCCC
GGCCCCACTTCCCGCCATGGTGGTACGGCCACCGCCGCCGCATCCACCGAGCCGCGGAAC
TTCCCCTCTCGCTCGGCCACCATTGTGCCGCGCCATGGCGCGGGCCGCCCCCTCGCTCTC
TGCCGCGGCCTCGACGGCTGCCTCCTCCTCGACGACTCCTGCCAAGAAGAAGGTTCTCTT
GCCCATCGCCATGGGCACGGAGGAGATGGAGGCAGTCATCCTTGCCGGTGTACTCCGCCG
AGCCGGCGCCGACGTGACGCTGGCATCCGTGGAGGACGGCCTCGAGGTGGAGGCCTCGCG
TGGCTCCCACATCGTTGCTGACAAGCGCATTGCCGCTTGTGCAGACCAGGTGTTCGACCT
CGTGGCTCTCCCGGGTGGAATGCCTGGTTCAGTGCGGTTGAGAGACAGTGTGATCCTTCA
GAGGATCACAGTTAGACAGGCTGAGGAAAAAAGATTGTATGGTGCTATATGTGCTGCACC
AGCTGTTGTTCTCATGCCGTGGGGCCTCCACAAGAGAAAAAAGATCACTTGTCACCCATC
CTTTATAGAAGATCTCCCAACATTCCGAACTGTTGAATCAAATGTTCAGGTGTCTGGAGA
GCTAACAACAAGCCGTGGACCAGGGACAGCATTTCAGTTTGCTTTATCATTTGTAGAGCA
GTTGTTTGGGCCTTGTAAAGCTGAAGATATGGACAACACTTTGTTGACAAAGGTTGACGA
TAATCTTGAAAGAAGTATTGAAGTCAACGAAATTGAGTGGTCTTCTGATCACAATCCTCA
TGTTCTCATTCCAATTGCAAATGGTTCAGAAGAGATGGAGATAATAATGTTGACGGATGT
TTTACGGCGAGCAAATGTAAATGTGGTGTTGGCATCAGTTGAAAAATCAACAAGTATTGT
CGGGTCCCAAAGGATGAGGATTGTTGCTGATAAATGCATTTCAGATGCTTCTGCCTTAGA
ATATGATCTAATTATCCTTCCTGGAGGACCTGCCGGAGCTGAGAGACTGCACAAGTCCAG
TGTTCTTAAGAAATTACTCAAGGAACAAAAGCAAACAGGCAGGATGTATGGTGGGATCTG
TTCTTCTCCTGTGATCTTGCAGAAGCAGGGTTTACTCCAGGATAAAACAGTGACAGCTCA
TCCTTCCATAGTCAATCAGCTCACGTGTGAAGTTATTGATCGATCAAAGGTTGTGATTGA
TGGAAATTTGATTACCGGGATGGGGCTTGGGACGGTCATTGATTTTTCGCTGGCTATTAT
TAAAAAATTCTTTGGCCATGGACGAGCCAAAGGCGTGGCAAATGGCATGGTTTTTGAGTA
TCCCAAGAGCTGAAACACCTAAAATATATCTGGCACTCTGTAATACGCAGACGTGAGACA
TTTAGTTGTGCTACAAGTATATTGCAGTAGCTACGCTTGAGACAAAGGTCACCGGTGCTC
TTCGTCTTGCTGTTTTATGGGCCTTCAACTCTTCTTGAGACAACAACATATTCCTCTGTT
GCGTCATTGGACATCTGGACGGAAATCATTCCACTATATTTGTTGGGATGGACCATTTAC
ATTGAGAAGATTCGGTGGAGGTCAATTCATCTCGATATGATCTGTTGGCACATTACGACA
CAGGTTGATTACTAACTGGATCTAAATATTGCAACTGATCAAGTGATGATAACCTTCTGC
TTGACGGATGCGCTTTTAGAAGAAACCCATCATGTTCAGTGGGGCTTCCAAGGACCTGAA
GCCCTTTTGATGTTGCTCTTATGCCCAGCTATCCAATCTGATAGTAGAGACTTCCAGCCT
GCGACAAACCAATTTAGCTTCAAAATTCAGATCTTTTTTCAGCAATTTTGTTGCCTGAAT
TCTGAAGTTAACTGGCAATGTAGTACAATGGATTCCCTCAATTTGCTCGATAGTTGATCA
GATAATTTGCTCGATAGTTGATCAAATATTTGTTGCAACAAACATGCTC