Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0519400-02
CDS Infomation	cds chromosome:IRGSP-1.0:5:25781911:25785896:-1 gene:Os05g0519400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsSec18, Sec18 description:Homologue of NSF (N-ethylmaleimide sensitive factor), ATPase, Regulation of vacuolar morphology in endosperm cell (Os05t0519400-01);Similar to predicted protein. (Os05t0519400-02);Similar to predicted protein. (Os05t0519400-03)
Sequence	GACCTCCACGTTATCATTTTCGATGAAATTGATGCTATCTGCAAGTCTAGAGGATCTACC AGAGATGGTACGGGTGTACATGATAGCATTGTAAATCAGCTCCTTACAAAGATAGATGGT GTTGAGGCATTGAATAATGTGCTCCTCATTGGAATGACCAATCGTAAGGATTTACTTGAT GAAGCTTTACTGAGGCCTGGACGATTGGAAGTTCATATTGAGATAAACCTGCCTGATGAA AATGGCCGTTTGCAGATTCTTCAAATTCATACGAATAAGATGAAAGAAAGCTCTTTCCTT TCCCCGAATGTTAATCTTCAGGAGCTAGCTGCACGGACAAAGAACTACAGTGGAGCAGAG CTGGAAGGTGTCGTCAAAAGTGCAGTCTCATATGCTTTGAACAGGCAGATAAGCATGGAT GACCTTACCAAGCCTTTGGATGAAGAAAGCATTAAGGTTACTATGGATGATTTTGTGAAT GCACTTCATGAAATTACCCCTGCATTTGGTGCTTCCACTGATGACCTTGAAAGATGCAGG CTAAGGGGTATGGTTGATTGTGGCAAGGCACATAGGCACTTGTATGAGAGAGGTATGCTT CTTGTTGAGCAAGTTAAAGTTAGCAAAGGTAGTCCACTTGTGACATGCCTCTTGGAAGGT CCTGCTGGAAGTGGTAAATCGGCTTTGGCTGCTACTGTTGGCATTGACAGTGATTTTGCT TACGTCAAAATTATATCAGCAGAGACAATGATTGGTTTCAGTGAAAGCAGCAAATGTGCA CAGATTTGCAAGGTTTTTGAGGATGCATACAAATCTCAGTTTGGCATCATAATTCTAGAT GACATCGAAAGGTTACTGGAATATGTTGCCATTGGACCACGCTTTTCAAACATAATCTCA CAAACTCTACTAGTCCTTCTCAAGAGGGTTCCTCCTAAGGGCAAGAACTTGCTTGTTATT GGAACAACAAGTGAAGTAGGCTTTCTAGAATCCATTGGTATGTGCGACGTGTTCTCCGTG ACATACCATGTCCCCAAACTGAAAAAGGAGGATGCTACAAAGGTGTTGCGGCATCTCAAT GTGTTCGATGAAGCGGACATTGATGCGGCTGCAGAAGCACTGGACGATATGCCAATCAAG AAGCTGTACACACTCGTTGAGATGGCTGCACAAGGGCCATCAGGAGGAAGCGCGGAAGCA GTCTATGGTGGAGAGGAAAAGATAGATATCAACCACTTCTTTAGCATCTTGAGTGATATT ATCCGCTATTAA

Peptide Sequence

PEP ID	Os05t0519400-02
PEP Infomation	pep chromosome:IRGSP-1.0:5:25781911:25785896:-1 gene:Os05g0519400 transcript:Os05t0519400-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsSec18, Sec18 description:Homologue of NSF (N-ethylmaleimide sensitive factor), ATPase, Regulation of vacuolar morphology in endosperm cell (Os05t0519400-01);Similar to predicted protein. (Os05t0519400-02);Similar to predicted protein. (Os05t0519400-03)
Sequence	DLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVEALNNVLLIGMTNRKDLLD EALLRPGRLEVHIEINLPDENGRLQILQIHTNKMKESSFLSPNVNLQELAARTKNYSGAE LEGVVKSAVSYALNRQISMDDLTKPLDEESIKVTMDDFVNALHEITPAFGASTDDLERCR LRGMVDCGKAHRHLYERGMLLVEQVKVSKGSPLVTCLLEGPAGSGKSALAATVGIDSDFA YVKIISAETMIGFSESSKCAQICKVFEDAYKSQFGIIILDDIERLLEYVAIGPRFSNIIS QTLLVLLKRVPPKGKNLLVIGTTSEVGFLESIGMCDVFSVTYHVPKLKKEDATKVLRHLN VFDEADIDAAAEALDDMPIKKLYTLVEMAAQGPSGGSAEAVYGGEEKIDINHFFSILSDI IRY

Transcript Sequence

Transcript ID	Os05t0519400-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:25781911:25785896:-1 gene:Os05g0519400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsSec18, Sec18 description:Homologue of NSF (N-ethylmaleimide sensitive factor), ATPase, Regulation of vacuolar morphology in endosperm cell (Os05t0519400-01);Similar to predicted protein. (Os05t0519400-02);Similar to predicted protein. (Os05t0519400-03)
Sequence	GTGACCTCCACGTTATCATTTTCGATGAAATTGATGCTATCTGCAAGTCTAGAGGATCTA CCAGAGATGGTACGGGTGTACATGATAGCATTGTAAATCAGCTCCTTACAAAGATAGATG GTGTTGAGGCATTGAATAATGTGCTCCTCATTGGAATGACCAATCGTAAGGATTTACTTG ATGAAGCTTTACTGAGGCCTGGACGATTGGAAGTTCATATTGAGATAAACCTGCCTGATG AAAATGGCCGTTTGCAGATTCTTCAAATTCATACGAATAAGATGAAAGAAAGCTCTTTCC TTTCCCCGAATGTTAATCTTCAGGAGCTAGCTGCACGGACAAAGAACTACAGTGGAGCAG AGCTGGAAGGTGTCGTCAAAAGTGCAGTCTCATATGCTTTGAACAGGCAGATAAGCATGG ATGACCTTACCAAGCCTTTGGATGAAGAAAGCATTAAGGTTACTATGGATGATTTTGTGA ATGCACTTCATGAAATTACCCCTGCATTTGGTGCTTCCACTGATGACCTTGAAAGATGCA GGCTAAGGGGTATGGTTGATTGTGGCAAGGCACATAGGCACTTGTATGAGAGAGGTATGC TTCTTGTTGAGCAAGTTAAAGTTAGCAAAGGTAGTCCACTTGTGACATGCCTCTTGGAAG GTCCTGCTGGAAGTGGTAAATCGGCTTTGGCTGCTACTGTTGGCATTGACAGTGATTTTG CTTACGTCAAAATTATATCAGCAGAGACAATGATTGGTTTCAGTGAAAGCAGCAAATGTG CACAGATTTGCAAGGTTTTTGAGGATGCATACAAATCTCAGTTTGGCATCATAATTCTAG ATGACATCGAAAGGTTACTGGAATATGTTGCCATTGGACCACGCTTTTCAAACATAATCT CACAAACTCTACTAGTCCTTCTCAAGAGGGTTCCTCCTAAGGGCAAGAACTTGCTTGTTA TTGGAACAACAAGTGAAGTAGGCTTTCTAGAATCCATTGGTATGTGCGACGTGTTCTCCG TGACATACCATGTCCCCAAACTGAAAAAGGAGGATGCTACAAAGGTGTTGCGGCATCTCA ATGTGTTCGATGAAGCGGACATTGATGCGGCTGCAGAAGCACTGGACGATATGCCAATCA AGAAGCTGTACACACTCGTTGAGATGGCTGCACAAGGGCCATCAGGAGGAAGCGCGGAAG CAGTCTATGGTGGAGAGGAAAAGATAGATATCAACCACTTCTTTAGCATCTTGAGTGATA TTATCCGCTATTAACTACACGGCGTCGGAATGAACCCTAGGTGACACCATAGGAATTTAA TTGCACATTTCTTCTTACTTCAAGTTCTCCCTTTTGCCACCGTCGCCAGGGTATAGGGTT GTTTGATCTTTGAGGTTCGTGTCTCCTTGTTGTGCCGCTTTGAGCTTTTGTTGGAATGTT GTTATGATTCGGACAGAGGTT