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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0519000-00
CDS Infomation

cds chromosome:IRGSP-1.0:5:25760389:25761404:1 gene:Os05g0519000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:VQ motif-containing protein 21 description:VQ domain containing protein. (Os05t0519000-00)
Sequence

ATGGAAGTTGCTGCTCGGAAGCAACAACTCCTCCTCCTCCCGTCCATGGCGCACGACCCA
AACTCCCCGTCCTCCTCCACCTCCTCCTCCTCCCCATCCTCCGCCGCCGCCGCCGCCTCC
TCTTCGCCGTCGTCCCACCGCCCGCCGCCGCCGCCGCCGTCGTCGTCGTCACAACCCGCC
CTCCCGCCTTCCCCGAGGACCGTCGTCCCGCGCACCATCGACACCACCCCGTTCCCCACC
ACCTTCGTCCAGGCCGACACCGCCTCCTTCAAGCAGGTCGTCCAGATGCTCACCGGCTCC
GACACCACGCCGCCGTCACAGAGGCCGCCGGCCAAGAGCAACCACCACCAGCACCACCAC
AGCGGCGCGCCATGCCGGCCCAAGAAGCAGGCGTTCAAGCTGTACGAGCGCCGGAGCGGC
GTCCACAAGAACTTCAAGATGATCGCGCCGCTGGCGATGGCGGCGGCCGCGGCCGCGGGG
GCGTCGTCGTCGCCGAGGAAGGCGGCGCAGCACCAGCAGCAGGAGGCGCTGTCGCCGAGC
GTGCTCGACTTCCCGTCGCTGGCGCTCAGCCCCGTCACGCCGCTCGTGGCCGACCCCTTC
AACCGGTCACCGGCGTCGGCGTCGTCGTCGGCGTCACCGGAGGAGGAGGCCGCGGCCATC
GCGCAGAAGGGGTTCTTCCTCCACCCGTCGCCGAGGAGCGCCGAGCCGCCTCGCCTCCTG
CCGCTGTTCCCCGTCACGTCCCCGAGGGTAGCCTCCTCCTCCTCCTCCTCCGCCGCCGCC
GCCGTCGCCGTCGCCTCGCCGTCGTTCGAGTGA

Peptide Sequence

PEP ID

Os05t0519000-00
PEP Infomation

pep chromosome:IRGSP-1.0:5:25760389:25761404:1 gene:Os05g0519000 transcript:Os05t0519000-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:VQ motif-containing protein 21 description:VQ domain containing protein. (Os05t0519000-00)
Sequence

MEVAARKQQLLLLPSMAHDPNSPSSSTSSSSPSSAAAAASSSPSSHRPPPPPPSSSSQPA
LPPSPRTVVPRTIDTTPFPTTFVQADTASFKQVVQMLTGSDTTPPSQRPPAKSNHHQHHH
SGAPCRPKKQAFKLYERRSGVHKNFKMIAPLAMAAAAAAGASSSPRKAAQHQQQEALSPS
VLDFPSLALSPVTPLVADPFNRSPASASSSASPEEEAAAIAQKGFFLHPSPRSAEPPRLL
PLFPVTSPRVASSSSSSAAAAVAVASPSFE

Transcript Sequence

Transcript ID

Os05t0519000-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:25760389:25761404:1 gene:Os05g0519000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:VQ motif-containing protein 21 description:VQ domain containing protein. (Os05t0519000-00)
Sequence

CTCTCGCCTCGCGTCTCCTGCAATGGAAGTTGCTGCTCGGAAGCAACAACTCCTCCTCCT
CCCGTCCATGGCGCACGACCCAAACTCCCCGTCCTCCTCCACCTCCTCCTCCTCCCCATC
CTCCGCCGCCGCCGCCGCCTCCTCTTCGCCGTCGTCCCACCGCCCGCCGCCGCCGCCGCC
GTCGTCGTCGTCACAACCCGCCCTCCCGCCTTCCCCGAGGACCGTCGTCCCGCGCACCAT
CGACACCACCCCGTTCCCCACCACCTTCGTCCAGGCCGACACCGCCTCCTTCAAGCAGGT
CGTCCAGATGCTCACCGGCTCCGACACCACGCCGCCGTCACAGAGGCCGCCGGCCAAGAG
CAACCACCACCAGCACCACCACAGCGGCGCGCCATGCCGGCCCAAGAAGCAGGCGTTCAA
GCTGTACGAGCGCCGGAGCGGCGTCCACAAGAACTTCAAGATGATCGCGCCGCTGGCGAT
GGCGGCGGCCGCGGCCGCGGGGGCGTCGTCGTCGCCGAGGAAGGCGGCGCAGCACCAGCA
GCAGGAGGCGCTGTCGCCGAGCGTGCTCGACTTCCCGTCGCTGGCGCTCAGCCCCGTCAC
GCCGCTCGTGGCCGACCCCTTCAACCGGTCACCGGCGTCGGCGTCGTCGTCGGCGTCACC
GGAGGAGGAGGCCGCGGCCATCGCGCAGAAGGGGTTCTTCCTCCACCCGTCGCCGAGGAG
CGCCGAGCCGCCTCGCCTCCTGCCGCTGTTCCCCGTCACGTCCCCGAGGGTAGCCTCCTC
CTCCTCCTCCTCCGCCGCCGCCGCCGTCGCCGTCGCCTCGCCGTCGTTCGAGTGATCGAG
CTATGCACGTCGGCGACGCGCGTCGCGCTGCTTAGATTATTTATGATATGAGCACTGCTC
GGCAGTATGTACTGTTCGTACTCGTTCTTGGTGCTTAATTGCTGTAATTTTTTTCTCACT
TCATTGAGCGATTTGCTCGCGAAGAAACAACGGAAAAGAAACACATCTTGATCGTC