Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os05t0517900-01
CDS Infomation

cds chromosome:IRGSP-1.0:5:25666154:25667298:1 gene:Os05g0517900 gene_biotype:protein_coding transcript_biotype:protein_coding description:2 , 3 cyclic phosphodiesterase, plant domain containing protein. (Os05t0517900-01)
Sequence

ATGGACGCCGGCGACCAGTCGCCGAAGGAGGTGTACTCCGTGTGGGCGCTCCCGCCCGAG
CCCGTCCGCGCGCGGCTCCGCGGCGTCATGGCCGGCCTCCGCGCCGCGCACGGCGGGCCG
GCGTTCGAGCCGCACGCCACCGTCGTCGGGGCCATCCGCCTCCGCCGATCCGCCGCCGTA
GAGGCGCTCCGCGCCGCCGCCGCCGGCGTCCGGCCCTACACCGCCCGTGTGGTCGGCGTC
GCCCGCGGTGACTTCTTCTACCAGTGCATCTACCTCCTCCTCGAGCCCACCCCCGAGGTG
GTGGAAGCGAGCGATCATTGCTGTGGCCACTTTGGGTACGAGAGATCAACCCCATATATG
CCACACGTCAGCCTCTTATATGGAGACCTGACAGATGAGGAGAAGGAGGTAGCAAGGAAG
AAGGTAGAGGAGATAGACAAGGAGATTTGTGGATTGCAGTTTGAGATCTCCGAGCTTGCG
CTGTATAGGACGGATACCGAGGACAAAAGCTTGGAGTCATGGGAATTGGTGGAGATCTGC
CACCTTGAGAGGAAGTGA

Peptide Sequence

PEP ID

Os05t0517900-01
PEP Infomation

pep chromosome:IRGSP-1.0:5:25666154:25667298:1 gene:Os05g0517900 transcript:Os05t0517900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:2 , 3 cyclic phosphodiesterase, plant domain containing protein. (Os05t0517900-01)
Sequence

MDAGDQSPKEVYSVWALPPEPVRARLRGVMAGLRAAHGGPAFEPHATVVGAIRLRRSAAV
EALRAAAAGVRPYTARVVGVARGDFFYQCIYLLLEPTPEVVEASDHCCGHFGYERSTPYM
PHVSLLYGDLTDEEKEVARKKVEEIDKEICGLQFEISELALYRTDTEDKSLESWELVEIC
HLERK

Transcript Sequence

Transcript ID

Os05t0517900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:5:25666154:25667298:1 gene:Os05g0517900 gene_biotype:protein_coding transcript_biotype:protein_coding description:2 , 3 cyclic phosphodiesterase, plant domain containing protein. (Os05t0517900-01)
Sequence

GGCAAAAGTATATTCCCCCCCAGCTTCCTCTCTCCGGCGCCGCTCGCCGCCTCCGACTCA
CCGGCACGACCGCGCGGCTCCACATGGACGCCGGCGACCAGTCGCCGAAGGAGGTGTACT
CCGTGTGGGCGCTCCCGCCCGAGCCCGTCCGCGCGCGGCTCCGCGGCGTCATGGCCGGCC
TCCGCGCCGCGCACGGCGGGCCGGCGTTCGAGCCGCACGCCACCGTCGTCGGGGCCATCC
GCCTCCGCCGATCCGCCGCCGTAGAGGCGCTCCGCGCCGCCGCCGCCGGCGTCCGGCCCT
ACACCGCCCGTGTGGTCGGCGTCGCCCGCGGTGACTTCTTCTACCAGTGCATCTACCTCC
TCCTCGAGCCCACCCCCGAGGTGGTGGAAGCGAGCGATCATTGCTGTGGCCACTTTGGGT
ACGAGAGATCAACCCCATATATGCCACACGTCAGCCTCTTATATGGAGACCTGACAGATG
AGGAGAAGGAGGTAGCAAGGAAGAAGGTAGAGGAGATAGACAAGGAGATTTGTGGATTGC
AGTTTGAGATCTCCGAGCTTGCGCTGTATAGGACGGATACCGAGGACAAAAGCTTGGAGT
CATGGGAATTGGTGGAGATCTGCCACCTTGAGAGGAAGTGATTAATCTCCTCCCGTTGGT
GCTTCTGCCATAAGTTAAGTTTGAGGTGAGTTTGTTCAATAATAAAGCTTGCCCAAATGC
AAAGCGATGCCTAAAATTTAAGTTTTGAGTTATTCCTACTGTAAAAGTTACATATATACA
TATATATCTTGGGTTCTTCCCAGATAATATTTGTCTTATTAATTATCTGTTGTACTGATA
ACTGAGTTATGTC