Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0517200-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:25641597:25646402:1 gene:Os05g0517200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TREHALOSE-6-PHOSPHATE SYNTHASE 6 description:HAD-superfamily hydrolase subfamily IIB protein. (Os05t0517200-01)
Sequence	ATGATGTCGAGGTCGTACACGAACCTGCTGGACCTCGCGGCGGGGAACTTCGAGGCGCTG GGGCCGGCGGGGGGAGGGAGGAGGAGGTCGTTCGGGGCGAAGCGGATGACGCGGGTGATG ACGGTGCCCGGGACGCTGTCGGAGCTGGACGACGAGGACGACGAGCCGGCGGCGACGAGC AGCGTCGCCTCCGACGTGCCCTCGTCGGCGGCGTGCGAGCGCCTCATCGTCGTGGCGAAC CAGCTCCCCGTGGTGGCGCGGCGGAGGCCGGGCGCCGCGGCGGGGGGGTGGGCGTTCTCG TGGGACGACGACTCGCTCCTCCTCCGCCTCCGCGACGGCGTCCCCGACGAGATGGAGGTG CTCTTCATCGGCACGCTCCGCGCCGACGTGCCCGCCTGCGAGCAGGACGAGGTGTCGCAG AGCCTCATCGATGGATTCGGATGCGCACCCGTGTTCCTCCCCGCGGGGCTCTACGACCGA TTCTACCAGCACTTCTGCAAGGGTTACCTATGGCCGCTGTTCCACTACATGCTCCCCTTC GCCTCCGCCTTGCCGGCGGCCGCATCCGGCGATGGCCGGTTTGACCGCGGCGCGTGGGAG GCCTACGTGCTCGCCAACAAATACTTCTTCGAGAAGGTGGTCGAGGTCATCAACCCGGAG GACGACTACGTTTGGGTCCACGATTACCACCTCATGGCGCTGCCCACCTTCCTCCGCCGC CGCTTCAATCGCCTCCGCATCGGGTTCTTCCTCCACAGCCCCTTTCCCTCATCGGAGATC TACCGCTCGCTGCCCGTCCGAGAGGAGATCCTAAGAACGCTGCTTAATTGCGATCTCATT GGATTCCACACATTCGATTATGCGAGGCACTTCCTATCTTGCTGTAGTAGGATGCTGGGG ATAGAGTACCAGTCAAAGCGTGGATACATTGGATTGGATTACTTTGGCCGCACTGTTGGA ATCAAGATCATGCCAGTGGGAATCCATATGGGTCAATTGCAATCAGTGTTGCGATTGTCC GAGAAAGAAAAGAAGGTTGCTGAGCTGCGGCAGCAATTCGAGGGCAAGTCCGTGTTACTT GGTGTGGATGATATGGATATCTTCAAGGGAATCAACTTAAAACTTCTTGCGTTTGAGAAT ATGCTGAGGACGCATCCCAAGTGGAAGGGAAGAGCTGTGTTGGTGCAGATTGCAAACCCA GCACGAGGGAAGGGAAAGGATCTGGAGGCTGTCCAGGCTGAGATTCGGGAGAGTTGTGAT AGAATTAACAAGGAGTTTGGCCAGTCAGGTTACAGTCCAGTGATTTTCATTGACCAGAGC GTGCCAAGTGCGGTGAGGCTTGCATATTATACGGTTGCTGAGTGTGTTGTGGTGACGGCT GTGAGGGATGGGATGAATTTGACCCCATATGAATACATTGTCTGCCGGGAGGGGATACCT GGCTCTGAGTGTGCACCAGAGGTGAGTGGACCAAAGAAGAGCATGTTGGTTGTGTCGGAG TTTATTGGTTGCTCACCTTCACTGAGTGGAGCCATTCGTGTTAACCCGTGGAATATCGAG GCAACTGCAGAGGCACTGAATGAGGCCATCTCAATGTCAGAGCGTGAAAAGCAGCTGAGG CACGAAAAACATTACCGTTATGTCAGCACCCATGATGTTGCATATTGGTCTAAGAGCTTT GTACAGGACCTGGAGAGGGCTTGCAAGGATCACTTTAGGAAACCATGCTGGGGCATTGGA TTGGGATTTGGCTTCAGGGTGGTAGCCCTAGACCCACATTTCACAAAGCTTAATTTCGAT TCAATTATAATGTCCTATGAGAGATCAAAGAGTAGGGCTATATTTCTCGACTATGATGGC ACATTGGTGCCACAGGCTTCGCTCAACAAGAATCCAAGTGAAGAATTACTGAGGATCATT AATACCCTATGCGCAGATAGAAATAACACCGTGTTCATTGTCAGCGGGAGAAGCAAGGAT GACTTGAGCAAAAAGCTTATCTCATGTCCAAAGCTAGGCATTGCCGCAGAGCATGGCTAC TTCTTAAGGTGGACTAGAGATGAAGAATGGCAAACCACTGCACAGACCTCAGATTTTGGA TGGATGCAAATGGCGAAGCCAGTGATGGATCTTTATACTGAATCAACTGACGGATCCACC ATTGAGACTAAAGAAACTGCACTGGTGTGGCACCATCAGGATGCTGACCAAGGTTTTGGC TCTTCCCAGGCAAAGGAAATGCTTGATCACTTGGAAAGTGTATTAGCAAATGAACCAGTC TCAGTCAAGAGTGGCCAATTCATTGTTGAAGTCAAACCTCAGGGTGTTACCAAAGGGCTC ATAGCTGAGAAAGTACTCACATCAATGAAGGAGAAGGGGCAACTGGCAGATTTTGTATTA TGCATTGGTGATGACAGGTCAGATGAGGATATGTTTGAAAATATTGCCGATGTCATGAAA AGGAGCATTGTTGCACCAAAAACTCCACTGTTTGCATGTACTGTGGGCCAGAAGCCAAGC AAAGCTAGGTTTTACCTGGATGATACATTTGAAGTCGTCACCATGTTGAGTTCACTGGCG GATGCTTCAGAACCAGACCTTATGGCAGACTTGGAAGATGACTTGGCCACATCAGTCTCA TCAATAGAAATAAGTGACAGAGTGGTATCTTTTAGTAATTTAAGGACAGAAGGATCTTAG

Peptide Sequence

PEP ID	Os05t0517200-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:25641597:25646402:1 gene:Os05g0517200 transcript:Os05t0517200-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TREHALOSE-6-PHOSPHATE SYNTHASE 6 description:HAD-superfamily hydrolase subfamily IIB protein. (Os05t0517200-01)
Sequence	MMSRSYTNLLDLAAGNFEALGPAGGGRRRSFGAKRMTRVMTVPGTLSELDDEDDEPAATS SVASDVPSSAACERLIVVANQLPVVARRRPGAAAGGWAFSWDDDSLLLRLRDGVPDEMEV LFIGTLRADVPACEQDEVSQSLIDGFGCAPVFLPAGLYDRFYQHFCKGYLWPLFHYMLPF ASALPAAASGDGRFDRGAWEAYVLANKYFFEKVVEVINPEDDYVWVHDYHLMALPTFLRR RFNRLRIGFFLHSPFPSSEIYRSLPVREEILRTLLNCDLIGFHTFDYARHFLSCCSRMLG IEYQSKRGYIGLDYFGRTVGIKIMPVGIHMGQLQSVLRLSEKEKKVAELRQQFEGKSVLL GVDDMDIFKGINLKLLAFENMLRTHPKWKGRAVLVQIANPARGKGKDLEAVQAEIRESCD RINKEFGQSGYSPVIFIDQSVPSAVRLAYYTVAECVVVTAVRDGMNLTPYEYIVCREGIP GSECAPEVSGPKKSMLVVSEFIGCSPSLSGAIRVNPWNIEATAEALNEAISMSEREKQLR HEKHYRYVSTHDVAYWSKSFVQDLERACKDHFRKPCWGIGLGFGFRVVALDPHFTKLNFD SIIMSYERSKSRAIFLDYDGTLVPQASLNKNPSEELLRIINTLCADRNNTVFIVSGRSKD DLSKKLISCPKLGIAAEHGYFLRWTRDEEWQTTAQTSDFGWMQMAKPVMDLYTESTDGST IETKETALVWHHQDADQGFGSSQAKEMLDHLESVLANEPVSVKSGQFIVEVKPQGVTKGL IAEKVLTSMKEKGQLADFVLCIGDDRSDEDMFENIADVMKRSIVAPKTPLFACTVGQKPS KARFYLDDTFEVVTMLSSLADASEPDLMADLEDDLATSVSSIEISDRVVSFSNLRTEGS

Transcript Sequence

Transcript ID	Os05t0517200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:25641597:25646402:1 gene:Os05g0517200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TREHALOSE-6-PHOSPHATE SYNTHASE 6 description:HAD-superfamily hydrolase subfamily IIB protein. (Os05t0517200-01)
Sequence	GGGCTCGTCTTCCTCGCCGCTCGCTCGCTCGCCTCCTCCATTTTTTTTTTCTTCTCTTCT TCTTACGAACTCGAAACGCGAAAAAGGGAGTAGATCAGATCAAAGACGCGGAGGAGGAGG AGGAGGAGGAGAGCTAGGGTTTGGATCGGGAGAGAGGGCTAGGGTTTCAGCCATGATGTC GAGGTCGTACACGAACCTGCTGGACCTCGCGGCGGGGAACTTCGAGGCGCTGGGGCCGGC GGGGGGAGGGAGGAGGAGGTCGTTCGGGGCGAAGCGGATGACGCGGGTGATGACGGTGCC CGGGACGCTGTCGGAGCTGGACGACGAGGACGACGAGCCGGCGGCGACGAGCAGCGTCGC CTCCGACGTGCCCTCGTCGGCGGCGTGCGAGCGCCTCATCGTCGTGGCGAACCAGCTCCC CGTGGTGGCGCGGCGGAGGCCGGGCGCCGCGGCGGGGGGGTGGGCGTTCTCGTGGGACGA CGACTCGCTCCTCCTCCGCCTCCGCGACGGCGTCCCCGACGAGATGGAGGTGCTCTTCAT CGGCACGCTCCGCGCCGACGTGCCCGCCTGCGAGCAGGACGAGGTGTCGCAGAGCCTCAT CGATGGATTCGGATGCGCACCCGTGTTCCTCCCCGCGGGGCTCTACGACCGATTCTACCA GCACTTCTGCAAGGGTTACCTATGGCCGCTGTTCCACTACATGCTCCCCTTCGCCTCCGC CTTGCCGGCGGCCGCATCCGGCGATGGCCGGTTTGACCGCGGCGCGTGGGAGGCCTACGT GCTCGCCAACAAATACTTCTTCGAGAAGGTGGTCGAGGTCATCAACCCGGAGGACGACTA CGTTTGGGTCCACGATTACCACCTCATGGCGCTGCCCACCTTCCTCCGCCGCCGCTTCAA TCGCCTCCGCATCGGGTTCTTCCTCCACAGCCCCTTTCCCTCATCGGAGATCTACCGCTC GCTGCCCGTCCGAGAGGAGATCCTAAGAACGCTGCTTAATTGCGATCTCATTGGATTCCA CACATTCGATTATGCGAGGCACTTCCTATCTTGCTGTAGTAGGATGCTGGGGATAGAGTA CCAGTCAAAGCGTGGATACATTGGATTGGATTACTTTGGCCGCACTGTTGGAATCAAGAT CATGCCAGTGGGAATCCATATGGGTCAATTGCAATCAGTGTTGCGATTGTCCGAGAAAGA AAAGAAGGTTGCTGAGCTGCGGCAGCAATTCGAGGGCAAGTCCGTGTTACTTGGTGTGGA TGATATGGATATCTTCAAGGGAATCAACTTAAAACTTCTTGCGTTTGAGAATATGCTGAG GACGCATCCCAAGTGGAAGGGAAGAGCTGTGTTGGTGCAGATTGCAAACCCAGCACGAGG GAAGGGAAAGGATCTGGAGGCTGTCCAGGCTGAGATTCGGGAGAGTTGTGATAGAATTAA CAAGGAGTTTGGCCAGTCAGGTTACAGTCCAGTGATTTTCATTGACCAGAGCGTGCCAAG TGCGGTGAGGCTTGCATATTATACGGTTGCTGAGTGTGTTGTGGTGACGGCTGTGAGGGA TGGGATGAATTTGACCCCATATGAATACATTGTCTGCCGGGAGGGGATACCTGGCTCTGA GTGTGCACCAGAGGTGAGTGGACCAAAGAAGAGCATGTTGGTTGTGTCGGAGTTTATTGG TTGCTCACCTTCACTGAGTGGAGCCATTCGTGTTAACCCGTGGAATATCGAGGCAACTGC AGAGGCACTGAATGAGGCCATCTCAATGTCAGAGCGTGAAAAGCAGCTGAGGCACGAAAA ACATTACCGTTATGTCAGCACCCATGATGTTGCATATTGGTCTAAGAGCTTTGTACAGGA CCTGGAGAGGGCTTGCAAGGATCACTTTAGGAAACCATGCTGGGGCATTGGATTGGGATT TGGCTTCAGGGTGGTAGCCCTAGACCCACATTTCACAAAGCTTAATTTCGATTCAATTAT AATGTCCTATGAGAGATCAAAGAGTAGGGCTATATTTCTCGACTATGATGGCACATTGGT GCCACAGGCTTCGCTCAACAAGAATCCAAGTGAAGAATTACTGAGGATCATTAATACCCT ATGCGCAGATAGAAATAACACCGTGTTCATTGTCAGCGGGAGAAGCAAGGATGACTTGAG CAAAAAGCTTATCTCATGTCCAAAGCTAGGCATTGCCGCAGAGCATGGCTACTTCTTAAG GTGGACTAGAGATGAAGAATGGCAAACCACTGCACAGACCTCAGATTTTGGATGGATGCA AATGGCGAAGCCAGTGATGGATCTTTATACTGAATCAACTGACGGATCCACCATTGAGAC TAAAGAAACTGCACTGGTGTGGCACCATCAGGATGCTGACCAAGGTTTTGGCTCTTCCCA GGCAAAGGAAATGCTTGATCACTTGGAAAGTGTATTAGCAAATGAACCAGTCTCAGTCAA GAGTGGCCAATTCATTGTTGAAGTCAAACCTCAGGGTGTTACCAAAGGGCTCATAGCTGA GAAAGTACTCACATCAATGAAGGAGAAGGGGCAACTGGCAGATTTTGTATTATGCATTGG TGATGACAGGTCAGATGAGGATATGTTTGAAAATATTGCCGATGTCATGAAAAGGAGCAT TGTTGCACCAAAAACTCCACTGTTTGCATGTACTGTGGGCCAGAAGCCAAGCAAAGCTAG GTTTTACCTGGATGATACATTTGAAGTCGTCACCATGTTGAGTTCACTGGCGGATGCTTC AGAACCAGACCTTATGGCAGACTTGGAAGATGACTTGGCCACATCAGTCTCATCAATAGA AATAAGTGACAGAGTGGTATCTTTTAGTAATTTAAGGACAGAAGGATCTTAGTCTGGTGT TTCTGCGTTGCTTTTCTCGCCGAAAAAGTTCTGTTGGAACTGAGTGAGGGAGTGTTAAGC AAGATGAAACACTGCAAGATTAAAGATGCTACAGGGCAAGGAAGTCGAATTCTTGGGTTC ATGATTCATTTTGGTGAAGATGAGGGTAAGGGATTAAAACATGTAGCTGCAAATATTCTG AAGTCCGGAAAGAGATTACAGTTTGAGTAGCTCCCAAATAGCCTCATTATGCGTTTTGTT ACGGCGGCATTTACTACCAGTCGCTGCTACGAAGATTCTTATGTTCATAGCTGACCTGCC ATGTTCTTTCCATTTGAATACTTATCCCAAGGCTAAGTAGGAAGCATCGGCGTGGCAGAA GTGCATCGGTGCAATATGGGGGAATATGAGGGTAAATCTTGTGACAGGTTAACTGCAGCT TGTGATTTCTTGCTTGTTAACCTGGTTAACAGAAATCGTCTAGTAGGGAAAAAACTAGTG ATGCTTTTCGTTTACTTGTAATGTTGTGGCAATGTGGAGGATGACATTTGATTCATTGTT TGACAGCATTATCTGTATCATCCTTATATGTAGCTAATTTATATTGAGTTCTTTACAATT AATCACCACTTGCT