Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0512000-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:25357253:25362761:-1 gene:Os05g0512000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsBRCA1 description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os05t0512000-01)
Sequence	ATGGCGGACACGGGGAGCCTGGAGAAGATGGGGCGAGAGCTCAAGTGCCCCATCTGCCTG AGCCTTCTCAGTTCGGCGGTATCCATCTCCTGCAACCACGTCTTCTGCAATGATTGCCTC ACGGAATCGATGAAATCCACGTCGAGCTGCCCCGTGTGCAAGGTCCCGTTCCGACGACGA GAAATGCGACCAGCACCTCACATGGACAATCTGGTCAGCATTTTCAAAAGCATGGAGGCT GCAGCAGGTACCAATGTTGTCTCAACACAGGAGGCTCCTGTGGTAAAACTTGCAGATGGA TCAGATTGTGTCAACAGCGGGAAAAATTCCAAAAGGTCACAAAAATCATTGACACGAAAA AGGAAGGTAACATCCGAGATGGAAAAAAATACAGCAAAGGATGCTACAGCTTCTGCATCC CAACCTACTACAAAGCCTTCCTTCTCTACTAACAAAAGAATACAAGTGAAACCATTCCCT GAATCTGAGACACCAATAAGAGCTGAGAAGATTATGAAGCCTGAAGAGCCAAAAAATAAT CTGAATAATGATGTTGAAGGAAAGAATAAAGCAGTGGCATCGGGTCAACCTGGAAGTCCT TCATTGTCACCCTTTTTTTGGCTAAGGGAACAAGAAGAACAAGAAGGCTGTACCGCTGAG ACGTTAAGTGAAACGCAATCTTTAGACACACCCTTGCGTCATAATGCACCCTCTTTTAGC GATATTAAAGATTCTGATGACGAAATCCCTTTAAATACAACTCCAAATAGCAAAGCTGCG GCTACAGAACTCTTTGACAGTGAAATATTTGAATGGACCCAGAGACCATGCTCTCCTGAA TTGTATTCCACTCCATTGAAAAAGCAGAGTAAAGCTAAGAGTAAACTAGATCAAATTGAA GAGAAGGGTGATGAAGAAGATGTGCATATTGGTGGTTCATTTGATAAGCTGGGTAATGCA AGTAATGCAGCTCAGCTTGTCAATACAAAAGCAACAAAGCAGAAGAGAAAGAAAACAAGT CCCAGTAACAAAAACAGTGCAAAATTGTCCAATCGTGCTGAGCCCTGCATAAAAAAGTCT GATGCCAATCAACAAGGTTCAAATAGACGTAAAAGTGCTGCCCTAAAATCTTGTCAGAAA AGCAGCAGTGCTGTAGGGAGGAATACTTCAGGTAGAAGAAACAAGGCCTCTAGCAACAGC AAGCCAATTCATGGCTCTAGTGATAACTCCCCAGAGTCATATCTTCCTAAGGAGGGTTTG GATGTTGAAGCACCTGACAAACCCCTTTCTGAAAGGATCCAAAACTTGGAGAAAACTAGT CGACGAAAGGGAAGTGCAAGGAAGCTGGAAATGGCAGGGAAAACTATTTCAGATACTACA GAGAAGAATAGTGAGCCAAGAAGTAAGAGAGTCAGAAGAATGTCTGACCACGCTATAGCT AAACCGGTTGAAGTTCCTTCAGGATCTGGAAATGAAACAGAAATACCACAGCTTCACACC CTCACAAAAGGCAGCATTCAACGCAAATCCTCCAACGCTAGAAGACATAGCAAAGTTTGT GGAGAACAGGAAGGTAAGAATAAACTTGAGAACACGACAATGACACCTATTATTTTACAT GGGAAATGCCAAAATAAAGAGGCAGTATGTACAGCTCCTTCAGTAAGGACTGCATCTGTT AAGTACAAGCAAGCAAAATTTAGCGAACAACCAGATTGTTTTGGAACGGAGAACTTTGGA AACCTTCAAGCATGCCCTGCACGTAATGTTTTACTGAAGAAGTGTGAGGTATCTACTTTG AAGGTTTCCTGTGCTTTCTGCCAGACCGATGTCATCACAGAGGAGTCTGGAGAGATGGTT CATTATCAAAATGGGAAACAAGTCCCTGCAGAGTTCAATGGAGGAGCCAATGTGGTGCAC TCTCACAAGAACTGCCTTGAGTGGGCTCCTGATGTCTACTTCGAAGATGATTCTGCCTTT AATCTTACAACTGAATTGGCGAGAAGCAGACGGATCAAATGTGCTTGCTGTGGAATTAAA GGAGCTGCACTTGGATGCTTTGAGATGAGTTGTCGGAGAAGTTTCCACTTCACCTGTGCT AAACTAATCCCAGAATGCAGATGGGATAATGAAAATTTTGTGATGTTATGCCCTCTACAT CGGTCTACAAAGTTACCCAATGAAAATTCTGAACAGCAAAAGCAACCTAAAAGGAAAACA ACACTCAAAGGGTCATCTCAAATAGGATCCAATCAAGATTGTGGTAATAACTGGAAATGG CCATCTGGATCACCACAGAAGTGGGTTCTCTGCTGCTCATCACTTTCTAGTTCTGAGAAG GAACTTGTATCAGAATTTGCAAAGTTAGCTGGCGTGCCTATTTCGGCAACTTGGAGTCCA AATGTTACCCATGTTATTGCATCAACTGATCTCTCTGGTGCTTGCAAACGGACGCTGAAG TTTCTCATGGCAATCTTGAATGGCAGATGGATTGTCTCCATAGATTGGGTTAAAACTTGC ATGGAGTGCATGGAACCAATTGATGAGCACAAATTTGAAGTCGCTACTGATGTTCATGGG ATCACTGATGGTCCTAGGTTAGGAAGATGCAGGGTTATTGACAGGCAACCTAAGCTGTTC GACAGCATGAGGTTCTACCTCCATGGGGACTACACAAAATCCTACAGAGGCTACCTGCAA GATCTCGTGGTTGCAGCAGGTGGAATAGTTCTTCAGAGGAAGCCCGTATCAAGAGACCAG CAAAAGCTTCTTGATGACAGCTCTGACCTCCTCATCGTTTACAGCTTCGAGAATCAAGAT AGGGCAAAATCCAAGGCCGAAACCAAGGCTGCTGATCGCAGGCAGGCTGATGCTCAGGCT CTTGCTTGCGCTTCTGGAGGCAGAGTTGTGAGCAGTGCATGGGTGATTGACTCAATTGCA GCCTGCAATCTGCAACCTCTTTGA

Peptide Sequence

PEP ID	Os05t0512000-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:25357253:25362761:-1 gene:Os05g0512000 transcript:Os05t0512000-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsBRCA1 description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os05t0512000-01)
Sequence	MADTGSLEKMGRELKCPICLSLLSSAVSISCNHVFCNDCLTESMKSTSSCPVCKVPFRRR EMRPAPHMDNLVSIFKSMEAAAGTNVVSTQEAPVVKLADGSDCVNSGKNSKRSQKSLTRK RKVTSEMEKNTAKDATASASQPTTKPSFSTNKRIQVKPFPESETPIRAEKIMKPEEPKNN LNNDVEGKNKAVASGQPGSPSLSPFFWLREQEEQEGCTAETLSETQSLDTPLRHNAPSFS DIKDSDDEIPLNTTPNSKAAATELFDSEIFEWTQRPCSPELYSTPLKKQSKAKSKLDQIE EKGDEEDVHIGGSFDKLGNASNAAQLVNTKATKQKRKKTSPSNKNSAKLSNRAEPCIKKS DANQQGSNRRKSAALKSCQKSSSAVGRNTSGRRNKASSNSKPIHGSSDNSPESYLPKEGL DVEAPDKPLSERIQNLEKTSRRKGSARKLEMAGKTISDTTEKNSEPRSKRVRRMSDHAIA KPVEVPSGSGNETEIPQLHTLTKGSIQRKSSNARRHSKVCGEQEGKNKLENTTMTPIILH GKCQNKEAVCTAPSVRTASVKYKQAKFSEQPDCFGTENFGNLQACPARNVLLKKCEVSTL KVSCAFCQTDVITEESGEMVHYQNGKQVPAEFNGGANVVHSHKNCLEWAPDVYFEDDSAF NLTTELARSRRIKCACCGIKGAALGCFEMSCRRSFHFTCAKLIPECRWDNENFVMLCPLH RSTKLPNENSEQQKQPKRKTTLKGSSQIGSNQDCGNNWKWPSGSPQKWVLCCSSLSSSEK ELVSEFAKLAGVPISATWSPNVTHVIASTDLSGACKRTLKFLMAILNGRWIVSIDWVKTC MECMEPIDEHKFEVATDVHGITDGPRLGRCRVIDRQPKLFDSMRFYLHGDYTKSYRGYLQ DLVVAAGGIVLQRKPVSRDQQKLLDDSSDLLIVYSFENQDRAKSKAETKAADRRQADAQA LACASGGRVVSSAWVIDSIAACNLQPL

Transcript Sequence

Transcript ID	Os05t0512000-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:25357253:25362761:-1 gene:Os05g0512000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsBRCA1 description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os05t0512000-01)
Sequence	GCAATCATTCCTCCCAAATCTGAAATCTTGCAAGGACTCCACGCCCGAGAGGGAGAAATC GAGGGATCGGCAATGGCGGACACGGGGAGCCTGGAGAAGATGGGGCGAGAGCTCAAGTGC CCCATCTGCCTGAGCCTTCTCAGTTCGGCGGTATCCATCTCCTGCAACCACGTCTTCTGC AATGATTGCCTCACGGAATCGATGAAATCCACGTCGAGCTGCCCCGTGTGCAAGGTCCCG TTCCGACGACGAGAAATGCGACCAGCACCTCACATGGACAATCTGGTCAGCATTTTCAAA AGCATGGAGGCTGCAGCAGGTACCAATGTTGTCTCAACACAGGAGGCTCCTGTGGTAAAA CTTGCAGATGGATCAGATTGTGTCAACAGCGGGAAAAATTCCAAAAGGTCACAAAAATCA TTGACACGAAAAAGGAAGGTAACATCCGAGATGGAAAAAAATACAGCAAAGGATGCTACA GCTTCTGCATCCCAACCTACTACAAAGCCTTCCTTCTCTACTAACAAAAGAATACAAGTG AAACCATTCCCTGAATCTGAGACACCAATAAGAGCTGAGAAGATTATGAAGCCTGAAGAG CCAAAAAATAATCTGAATAATGATGTTGAAGGAAAGAATAAAGCAGTGGCATCGGGTCAA CCTGGAAGTCCTTCATTGTCACCCTTTTTTTGGCTAAGGGAACAAGAAGAACAAGAAGGC TGTACCGCTGAGACGTTAAGTGAAACGCAATCTTTAGACACACCCTTGCGTCATAATGCA CCCTCTTTTAGCGATATTAAAGATTCTGATGACGAAATCCCTTTAAATACAACTCCAAAT AGCAAAGCTGCGGCTACAGAACTCTTTGACAGTGAAATATTTGAATGGACCCAGAGACCA TGCTCTCCTGAATTGTATTCCACTCCATTGAAAAAGCAGAGTAAAGCTAAGAGTAAACTA GATCAAATTGAAGAGAAGGGTGATGAAGAAGATGTGCATATTGGTGGTTCATTTGATAAG CTGGGTAATGCAAGTAATGCAGCTCAGCTTGTCAATACAAAAGCAACAAAGCAGAAGAGA AAGAAAACAAGTCCCAGTAACAAAAACAGTGCAAAATTGTCCAATCGTGCTGAGCCCTGC ATAAAAAAGTCTGATGCCAATCAACAAGGTTCAAATAGACGTAAAAGTGCTGCCCTAAAA TCTTGTCAGAAAAGCAGCAGTGCTGTAGGGAGGAATACTTCAGGTAGAAGAAACAAGGCC TCTAGCAACAGCAAGCCAATTCATGGCTCTAGTGATAACTCCCCAGAGTCATATCTTCCT AAGGAGGGTTTGGATGTTGAAGCACCTGACAAACCCCTTTCTGAAAGGATCCAAAACTTG GAGAAAACTAGTCGACGAAAGGGAAGTGCAAGGAAGCTGGAAATGGCAGGGAAAACTATT TCAGATACTACAGAGAAGAATAGTGAGCCAAGAAGTAAGAGAGTCAGAAGAATGTCTGAC CACGCTATAGCTAAACCGGTTGAAGTTCCTTCAGGATCTGGAAATGAAACAGAAATACCA CAGCTTCACACCCTCACAAAAGGCAGCATTCAACGCAAATCCTCCAACGCTAGAAGACAT AGCAAAGTTTGTGGAGAACAGGAAGGTAAGAATAAACTTGAGAACACGACAATGACACCT ATTATTTTACATGGGAAATGCCAAAATAAAGAGGCAGTATGTACAGCTCCTTCAGTAAGG ACTGCATCTGTTAAGTACAAGCAAGCAAAATTTAGCGAACAACCAGATTGTTTTGGAACG GAGAACTTTGGAAACCTTCAAGCATGCCCTGCACGTAATGTTTTACTGAAGAAGTGTGAG GTATCTACTTTGAAGGTTTCCTGTGCTTTCTGCCAGACCGATGTCATCACAGAGGAGTCT GGAGAGATGGTTCATTATCAAAATGGGAAACAAGTCCCTGCAGAGTTCAATGGAGGAGCC AATGTGGTGCACTCTCACAAGAACTGCCTTGAGTGGGCTCCTGATGTCTACTTCGAAGAT GATTCTGCCTTTAATCTTACAACTGAATTGGCGAGAAGCAGACGGATCAAATGTGCTTGC TGTGGAATTAAAGGAGCTGCACTTGGATGCTTTGAGATGAGTTGTCGGAGAAGTTTCCAC TTCACCTGTGCTAAACTAATCCCAGAATGCAGATGGGATAATGAAAATTTTGTGATGTTA TGCCCTCTACATCGGTCTACAAAGTTACCCAATGAAAATTCTGAACAGCAAAAGCAACCT AAAAGGAAAACAACACTCAAAGGGTCATCTCAAATAGGATCCAATCAAGATTGTGGTAAT AACTGGAAATGGCCATCTGGATCACCACAGAAGTGGGTTCTCTGCTGCTCATCACTTTCT AGTTCTGAGAAGGAACTTGTATCAGAATTTGCAAAGTTAGCTGGCGTGCCTATTTCGGCA ACTTGGAGTCCAAATGTTACCCATGTTATTGCATCAACTGATCTCTCTGGTGCTTGCAAA CGGACGCTGAAGTTTCTCATGGCAATCTTGAATGGCAGATGGATTGTCTCCATAGATTGG GTTAAAACTTGCATGGAGTGCATGGAACCAATTGATGAGCACAAATTTGAAGTCGCTACT GATGTTCATGGGATCACTGATGGTCCTAGGTTAGGAAGATGCAGGGTTATTGACAGGCAA CCTAAGCTGTTCGACAGCATGAGGTTCTACCTCCATGGGGACTACACAAAATCCTACAGA GGCTACCTGCAAGATCTCGTGGTTGCAGCAGGTGGAATAGTTCTTCAGAGGAAGCCCGTA TCAAGAGACCAGCAAAAGCTTCTTGATGACAGCTCTGACCTCCTCATCGTTTACAGCTTC GAGAATCAAGATAGGGCAAAATCCAAGGCCGAAACCAAGGCTGCTGATCGCAGGCAGGCT GATGCTCAGGCTCTTGCTTGCGCTTCTGGAGGCAGAGTTGTGAGCAGTGCATGGGTGATT GACTCAATTGCAGCCTGCAATCTGCAACCTCTTTGAATCTAGAAGACTGCCTGGTGCCAA AATGCGAGTTCGATAGAGTAAGAAACAAGATAGAAATCTAAGATGCACAGGGCTTTGTAA TGAGACTTAAATTATTTGAAAATAAGTTTACTATGCGTTGCAAAAGAAACTAGACTGCAT TTCTATGG