Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os05t0509500-01
CDS Infomation	cds chromosome:IRGSP-1.0:5:25229702:25233200:-1 gene:Os05g0509500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Signal recognition particle 54 kDa protein 2 (SRP54). (Os05t0509500-01)
Sequence	ATGGTGCTCGCGCAGCTGGGCGGGAGCATCTCCCGCGCGCTGGCGCAGATGAGCAACGCG ACGGTGATCGACGACAAGGCGTTCGCCGACTGCCTCCACGAGATCGCGCGCGCGCTCCTG CAGTCCGACGTGCAGATCAGGATGGTCTCCGACATGCGCGCCAACATCCGGAGGGCCGTC AACCTCGACGCCCTCCCCGCCGGCACCAACAAGCGCCGCATCATACAGCAGGCCGTCTTC GCGGAGCTCTGCAACATGCTTGATCCGGGGAAGCCGTCCTTCACCCCCACCAAGGGGAAG CCCAGTGTGGTCATGTTCGTCGGCTTGCAAGGTTCTGGGAAAACCACTACCTGTACCAAA TATGCTCACTATCATCAGCTGAAGGGCTTTAAACCTTCATTGGTTTGTGCTGATACATTC AGAGCTGGTGCCTTTGATCAGTTAAAACAGAATGCTACAAAGGCCAAGATTCCTTACTAT GGAAGCTACATGGAATCAGACCCAGTGAAAATTGCTGTTGAGGGTGTGGAGAGGTTCAGG AAGGAGAAGTCTGATCTCATCATTGTTGATACTAGCGGGCGCCACAAGCAAGAGGCTGCA CTCTTCGAAGAAATGCGTCAAGTTGCAGAAGCAACGAAACCTGACCTTGTGATATTCGTG ATGGATGGTAGCATTGGTCAGGCAGCGTTTGATCAGGCGCAAGCATTTAAACAGAGTGCT TCTGTTGGTGCTGTGATTGTTACGAAATTGGATGGTCATGCCAAAGGAGGCGGTGCACTT AGCGCGGTTGCAGCTACAAAGAGCCCTGTTGTATTTATTGGAACTGGAGAACACATGCAG GATTTTGAGGTTTTCGATGTGAAACCATTTGTTAGTCGTCTGTTAGGAATGGGAGACTTG TCTGGCTTAGTGAACAAGATCAAAGATGCTATGCCTGCTGATCAACAACCTGAGCTTATG CAGAGACTGATAGAAGGAACCTTTACTCTCAGAGTATTCTACGAGCTGTTCCAGAATCTT CTTAACATGGGTCCTATTGGACAGGTTTTATCTATGATACCTGGATTTAGGTCTGAACTG ATGCCAAAAGGACATGACAAGGAAAGCCAAGCAAAGATTAAGCGGTACATGACTATTATG GATTCTATGACAAATGCAGAGCTTGATAGCACAAACCCAAAGCTGATGAGTGAATCACGA ATTAAACGGGTCGCTCGAGGATCTGGCAGGACCATGAAAGATGTGACCGACATGCTGGAA GAGTACAAGAGAATCGCCAAGGTGTGTAGCAAGTTGAAGAAGAAGTTGCCCAAGAATATG GACAGGAATGTTATGAACAACAAGGACACGCTGAACACCATTAACAATCTCATCCCTAAG CAATTGTTGAATCAGATCGGTGGTGTTAATCCGTTGCAGAGCGTCATGAAGCAAATGGGC TTAAAGACATGA

Peptide Sequence

PEP ID	Os05t0509500-01
PEP Infomation	pep chromosome:IRGSP-1.0:5:25229702:25233200:-1 gene:Os05g0509500 transcript:Os05t0509500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Signal recognition particle 54 kDa protein 2 (SRP54). (Os05t0509500-01)
Sequence	MVLAQLGGSISRALAQMSNATVIDDKAFADCLHEIARALLQSDVQIRMVSDMRANIRRAV NLDALPAGTNKRRIIQQAVFAELCNMLDPGKPSFTPTKGKPSVVMFVGLQGSGKTTTCTK YAHYHQLKGFKPSLVCADTFRAGAFDQLKQNATKAKIPYYGSYMESDPVKIAVEGVERFR KEKSDLIIVDTSGRHKQEAALFEEMRQVAEATKPDLVIFVMDGSIGQAAFDQAQAFKQSA SVGAVIVTKLDGHAKGGGALSAVAATKSPVVFIGTGEHMQDFEVFDVKPFVSRLLGMGDL SGLVNKIKDAMPADQQPELMQRLIEGTFTLRVFYELFQNLLNMGPIGQVLSMIPGFRSEL MPKGHDKESQAKIKRYMTIMDSMTNAELDSTNPKLMSESRIKRVARGSGRTMKDVTDMLE EYKRIAKVCSKLKKKLPKNMDRNVMNNKDTLNTINNLIPKQLLNQIGGVNPLQSVMKQMG LKT

Transcript Sequence

Transcript ID	Os05t0509500-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:5:25229702:25233200:-1 gene:Os05g0509500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Signal recognition particle 54 kDa protein 2 (SRP54). (Os05t0509500-01)
Sequence	AGTTTTTGTAACACCTCTTCGATTCATATCCGGATTCCGATTTACACCAAACCCTGTCCA TATATATATAAGCTATACTAATAACGATCACGGAGATAAACACTCCACAAATCTGGGCAG CCGCCGCGCCACGAGCACGAGCACGACACGACACGTTATCCATCCCGCCGCCGAAGATCG CCGCACGCCGGAGCGCCGATCGATCGGTGGAGATGGTGCTCGCGCAGCTGGGCGGGAGCA TCTCCCGCGCGCTGGCGCAGATGAGCAACGCGACGGTGATCGACGACAAGGCGTTCGCCG ACTGCCTCCACGAGATCGCGCGCGCGCTCCTGCAGTCCGACGTGCAGATCAGGATGGTCT CCGACATGCGCGCCAACATCCGGAGGGCCGTCAACCTCGACGCCCTCCCCGCCGGCACCA ACAAGCGCCGCATCATACAGCAGGCCGTCTTCGCGGAGCTCTGCAACATGCTTGATCCGG GGAAGCCGTCCTTCACCCCCACCAAGGGGAAGCCCAGTGTGGTCATGTTCGTCGGCTTGC AAGGTTCTGGGAAAACCACTACCTGTACCAAATATGCTCACTATCATCAGCTGAAGGGCT TTAAACCTTCATTGGTTTGTGCTGATACATTCAGAGCTGGTGCCTTTGATCAGTTAAAAC AGAATGCTACAAAGGCCAAGATTCCTTACTATGGAAGCTACATGGAATCAGACCCAGTGA AAATTGCTGTTGAGGGTGTGGAGAGGTTCAGGAAGGAGAAGTCTGATCTCATCATTGTTG ATACTAGCGGGCGCCACAAGCAAGAGGCTGCACTCTTCGAAGAAATGCGTCAAGTTGCAG AAGCAACGAAACCTGACCTTGTGATATTCGTGATGGATGGTAGCATTGGTCAGGCAGCGT TTGATCAGGCGCAAGCATTTAAACAGAGTGCTTCTGTTGGTGCTGTGATTGTTACGAAAT TGGATGGTCATGCCAAAGGAGGCGGTGCACTTAGCGCGGTTGCAGCTACAAAGAGCCCTG TTGTATTTATTGGAACTGGAGAACACATGCAGGATTTTGAGGTTTTCGATGTGAAACCAT TTGTTAGTCGTCTGTTAGGAATGGGAGACTTGTCTGGCTTAGTGAACAAGATCAAAGATG CTATGCCTGCTGATCAACAACCTGAGCTTATGCAGAGACTGATAGAAGGAACCTTTACTC TCAGAGTATTCTACGAGCTGTTCCAGAATCTTCTTAACATGGGTCCTATTGGACAGGTTT TATCTATGATACCTGGATTTAGGTCTGAACTGATGCCAAAAGGACATGACAAGGAAAGCC AAGCAAAGATTAAGCGGTACATGACTATTATGGATTCTATGACAAATGCAGAGCTTGATA GCACAAACCCAAAGCTGATGAGTGAATCACGAATTAAACGGGTCGCTCGAGGATCTGGCA GGACCATGAAAGATGTGACCGACATGCTGGAAGAGTACAAGAGAATCGCCAAGGTGTGTA GCAAGTTGAAGAAGAAGTTGCCCAAGAATATGGACAGGAATGTTATGAACAACAAGGACA CGCTGAACACCATTAACAATCTCATCCCTAAGCAATTGTTGAATCAGATCGGTGGTGTTA ATCCGTTGCAGAGCGTCATGAAGCAAATGGGCTTAAAGACATGAACGAAATGTTTTGGGA GCATGTGCTGATGTTAATTGATATTTGCAAATATATATGATGGGCTTGATGCAAACACTC GGCTAACATTGAGGGCCTGGTTTTCAGTGGGATATCGGCATTTAAAGTATTTTTTTTCTT CATGCTGAATGGAGGAAGTAGTAATATTAATTTTGCTGAAATTTATGTCAATTCAGTCAA TCAATAGTTAGCGTACCCTCGTAAGGGGCATTTAAAGTATTTTTTTTCCTTCATGCTGAA TGGAGGAAGTATTGGGCACAATGTTTCTCTTAAACTGACAAAGGTCATCGATTGGTATTG ATGCGCATTTGCGTTCGCG